Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99991 * 2 1 4 4 O 1.20822 * 119.99784 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47049 * 180.02562 * 5 3 2 7 7 C 1.37091 * 120.00009 * 96.39686 * 6 5 3 8 8 H 1.08000 * 120.00130 * 160.65643 * 7 6 5 9 9 C 1.38951 * 120.00125 * 340.66008 * 7 6 5 10 10 N 1.31407 * 119.99922 * 341.47294 * 9 7 6 11 11 Si 1.86805 * 120.00200 * 161.47783 * 9 7 6 12 12 H 1.48499 * 109.47129 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46952 * 299.99876 * 11 9 7 14 14 H 1.48497 * 109.47007 * 59.99405 * 11 9 7 15 15 C 1.34777 * 119.99702 * 276.39782 * 6 5 3 16 16 O 1.21291 * 120.00019 * 359.97438 * 15 6 5 17 17 C 1.50703 * 119.99796 * 180.02562 * 15 6 5 18 18 H 1.08995 * 109.58178 * 57.34661 * 17 15 6 19 19 C 1.53236 * 109.57621 * 297.07667 * 17 15 6 20 20 N 1.47275 * 108.79990 * 240.21238 * 19 17 15 21 21 C 1.47313 * 110.16051 * 60.80660 * 20 19 17 22 22 C 1.53208 * 108.80296 * 299.19140 * 21 20 19 23 23 N 1.47264 * 109.57990 * 177.62183 * 17 15 6 24 24 C 1.47315 * 110.15497 * 180.60091 * 23 17 15 25 25 C 1.47315 * 110.15567 * 299.18489 * 20 19 17 26 26 H 1.08998 * 109.58500 * 301.01647 * 25 20 19 27 27 C 1.52998 * 109.58545 * 180.60504 * 25 20 19 28 28 H 1.09000 * 109.46681 * 299.99747 * 1 2 3 29 29 H 1.09002 * 109.47388 * 59.99776 * 1 2 3 30 30 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47594 * 59.99759 * 5 3 2 32 32 H 1.09002 * 109.47230 * 299.99759 * 5 3 2 33 33 H 0.97003 * 120.00100 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.58519 * 0.02562 * 19 17 15 35 35 H 1.08997 * 109.57920 * 120.28484 * 19 17 15 36 36 H 1.09004 * 109.57678 * 58.97989 * 21 20 19 37 37 H 1.09001 * 109.58241 * 179.39192 * 21 20 19 38 38 H 1.08999 * 109.58623 * 119.79796 * 22 21 20 39 39 H 1.09005 * 109.57669 * 240.06801 * 22 21 20 40 40 H 1.09001 * 109.58829 * 58.98098 * 24 23 17 41 41 H 1.09007 * 109.58115 * 179.39419 * 24 23 17 42 42 H 1.09002 * 109.46948 * 59.99706 * 27 25 20 43 43 H 1.08996 * 109.47394 * 180.02562 * 27 25 20 44 44 H 1.09003 * 109.47094 * 300.00144 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.3034 3.2988 1.1803 8 1 4.8947 4.2025 1.1723 9 6 3.8688 2.7636 2.3866 10 7 2.8739 1.9053 2.4041 11 14 4.6987 3.2641 3.9836 12 1 4.0534 2.5578 5.1194 13 1 6.1378 2.9019 3.9282 14 1 4.5644 4.7308 4.1727 15 6 4.0476 3.3636 -1.1594 16 8 3.7634 2.8157 -2.2035 17 6 4.4754 4.8086 -1.1587 18 1 5.4625 4.8971 -0.7050 19 6 3.4670 5.6423 -0.3612 20 7 2.8848 6.6615 -1.2508 21 6 2.1839 6.0148 -2.3735 22 6 3.1922 5.1813 -3.1708 23 7 4.5214 5.3103 -2.5425 24 6 4.9524 6.7189 -2.5577 25 6 3.9408 7.5535 -1.7602 26 1 4.4462 8.0362 -0.9238 27 6 3.3202 8.6155 -2.6701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9558 0.7809 -0.8907 32 1 3.9564 0.7806 0.8892 33 1 2.5707 1.5314 3.2463 34 1 2.6770 4.9946 0.0189 35 1 3.9733 6.1285 0.4726 36 1 1.3974 5.3660 -1.9880 37 1 1.7479 6.7768 -3.0195 38 1 2.8866 4.1350 -3.1658 39 1 3.2353 5.5443 -4.1978 40 1 5.9376 6.8045 -2.0992 41 1 4.9935 7.0773 -3.5863 42 1 2.5943 9.1995 -2.1043 43 1 4.1030 9.2740 -3.0463 44 1 2.8212 8.1291 -3.5083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521034664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = -61.712256 kcal Electronic energy + Delta-G solvation = -28782.148033 eV Core-core repulsion = 24929.470536 eV Total energy + Delta-G solvation = -3852.677497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01135 -39.34892 -37.99196 -35.46571 -34.68471 -33.04191 -32.10785 -31.65992 -30.76756 -28.60572 -27.11705 -26.07250 -24.81740 -23.42330 -22.90579 -21.96316 -20.37724 -19.34196 -18.03090 -17.08739 -16.86582 -16.57370 -16.08804 -15.69197 -15.47080 -15.17356 -14.91824 -14.37499 -13.96050 -13.86492 -13.42366 -12.88739 -12.74362 -12.61382 -12.53974 -12.45949 -12.30058 -12.18385 -11.85271 -11.63882 -11.35307 -11.30893 -11.18440 -11.08789 -10.84214 -10.68513 -10.57520 -10.45405 -10.23433 -9.96370 -9.82785 -9.56755 -9.34636 -9.05038 -8.39559 -7.98159 -7.19420 -6.54506 -4.06971 3.05625 3.15562 3.16451 3.43577 3.67685 3.91791 4.03326 4.10076 4.39577 4.75537 4.89002 4.92059 5.12627 5.35157 5.45030 5.46257 5.66966 5.68596 5.70602 5.73779 5.76776 5.89550 5.91372 5.94412 5.98355 6.05205 6.11988 6.19457 6.25745 6.28559 6.37519 6.42404 6.59145 6.65679 6.70310 7.05143 7.17143 7.29307 7.44709 7.55133 7.58844 7.64465 8.18195 8.93050 9.09353 9.30936 9.71935 10.52264 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.006313 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.016391 B = 4434.343955 C = 5601.667294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.499 6.499 5 C 0.159 3.841 6 N -0.427 5.427 7 C -0.337 4.337 8 H 0.101 0.899 9 C 0.041 3.959 10 N -0.868 5.868 11 Si 0.924 3.076 12 H -0.284 1.284 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.483 3.517 16 O -0.584 6.584 17 C 0.046 3.954 18 H 0.097 0.903 19 C 0.035 3.965 20 N -0.513 5.513 21 C 0.011 3.989 22 C -0.003 4.003 23 N -0.494 5.494 24 C 0.016 3.984 25 C 0.033 3.967 26 H 0.083 0.917 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.273 0.727 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 4.498 -4.110 6.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.327 3.673 4 O -0.383 6.383 5 C 0.033 3.967 6 N -0.146 5.146 7 C -0.464 4.464 8 H 0.119 0.881 9 C -0.164 4.164 10 N -0.505 5.505 11 Si 0.750 3.250 12 H -0.209 1.209 13 H -0.197 1.197 14 H -0.197 1.197 15 C 0.272 3.728 16 O -0.469 6.469 17 C -0.067 4.067 18 H 0.115 0.885 19 C -0.095 4.095 20 N -0.235 5.235 21 C -0.119 4.119 22 C -0.132 4.132 23 N -0.216 5.216 24 C -0.115 4.115 25 C -0.078 4.078 26 H 0.101 0.899 27 C -0.196 4.196 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.293 4.409 -4.451 6.272 hybrid contribution 0.052 0.347 1.202 1.252 sum 0.345 4.756 -3.249 5.770 Atomic orbital electron populations 1.22922 0.78709 1.01772 1.01608 1.86456 1.21674 1.35558 1.85723 1.23911 0.92230 0.80560 0.70592 1.90503 1.66460 1.36330 1.45045 1.20424 0.87268 0.85516 1.03485 1.43287 1.57294 1.07917 1.06097 1.19525 1.32635 1.11871 0.82339 0.88102 1.25200 0.94640 0.96934 0.99635 1.69780 1.22185 1.30453 1.28120 0.86037 0.79372 0.78966 0.80613 1.20885 1.19743 1.19731 1.19783 0.81871 0.87386 0.83753 1.90413 1.54935 1.69782 1.31812 1.22031 1.00868 0.94246 0.89566 0.88484 1.22829 0.98883 0.93239 0.94520 1.63976 1.24680 1.18290 1.16533 1.22890 0.97715 0.97904 0.93371 1.23322 0.88161 1.04870 0.96848 1.63768 1.26325 1.15872 1.15591 1.23060 0.98579 0.88924 1.00917 1.22503 0.93017 0.94307 0.97957 0.89908 1.21851 1.00695 0.97926 0.99113 0.92622 0.93192 0.89658 0.90129 0.86019 0.91584 0.87841 0.90182 0.90402 0.90871 0.86057 0.91769 0.90711 0.90399 0.92176 0.92434 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.03 10.57 -39.26 -0.41 -8.44 16 3 C 0.49 11.75 6.09 36.01 0.22 11.96 16 4 O -0.50 -13.39 15.69 -18.75 -0.29 -13.69 16 5 C 0.16 3.70 5.13 -5.19 -0.03 3.68 16 6 N -0.43 -10.24 2.16 -116.10 -0.25 -10.50 16 7 C -0.34 -7.96 7.83 -14.94 -0.12 -8.07 16 8 H 0.10 2.25 5.88 -52.49 -0.31 1.94 16 9 C 0.04 0.98 4.93 -17.47 -0.09 0.89 16 10 N -0.87 -21.65 9.16 55.50 0.51 -21.14 16 11 Si 0.92 18.65 29.59 -169.99 -5.03 13.62 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 C 0.48 11.39 6.26 -10.98 -0.07 11.32 16 16 O -0.58 -14.87 13.32 5.55 0.07 -14.80 16 17 C 0.05 0.93 2.02 -68.54 -0.14 0.79 16 18 H 0.10 1.90 7.54 -51.93 -0.39 1.51 16 19 C 0.04 0.70 4.34 -3.50 -0.02 0.68 16 20 N -0.51 -9.02 5.24 -225.07 -1.18 -10.20 16 21 C 0.01 0.19 5.75 -3.49 -0.02 0.17 16 22 C 0.00 -0.05 5.70 -3.34 -0.02 -0.07 16 23 N -0.49 -9.22 5.09 -226.21 -1.15 -10.37 16 24 C 0.02 0.23 5.81 -3.34 -0.02 0.21 16 25 C 0.03 0.47 3.05 -67.23 -0.20 0.27 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 C -0.14 -1.65 8.64 37.16 0.32 -1.33 16 28 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.78 7.62 -51.93 -0.40 1.38 16 32 H 0.12 2.82 6.45 -51.93 -0.33 2.48 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.10 2.47 7.04 -51.93 -0.37 2.11 16 35 H 0.08 1.50 7.91 -51.93 -0.41 1.09 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 38 H 0.12 2.69 5.12 -51.93 -0.27 2.43 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.05 7.62 -51.92 -0.40 0.66 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.68 6.31 -51.93 -0.33 0.36 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -29.10 337.47 -8.22 -37.32 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.46 Total: 10.77 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 0.89 Total: 22.34 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -2.07 Total: -52.21 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.64 Total: -36.93 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.10 -8.22 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521034664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.392 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds