Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99991 * 2 1 4 4 O 1.20822 * 119.99784 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47049 * 180.02562 * 5 3 2 7 7 C 1.37091 * 120.00009 * 96.39686 * 6 5 3 8 8 H 1.08000 * 120.00130 * 160.65643 * 7 6 5 9 9 C 1.38951 * 120.00125 * 340.66008 * 7 6 5 10 10 N 1.31407 * 119.99922 * 341.47294 * 9 7 6 11 11 Si 1.86805 * 120.00200 * 161.47783 * 9 7 6 12 12 H 1.48499 * 109.47129 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46952 * 299.99876 * 11 9 7 14 14 H 1.48497 * 109.47007 * 59.99405 * 11 9 7 15 15 C 1.34777 * 119.99702 * 276.39782 * 6 5 3 16 16 O 1.21291 * 120.00019 * 359.97438 * 15 6 5 17 17 C 1.50703 * 119.99796 * 180.02562 * 15 6 5 18 18 H 1.08995 * 109.58178 * 57.34661 * 17 15 6 19 19 C 1.53236 * 109.57621 * 297.07667 * 17 15 6 20 20 N 1.47275 * 108.79990 * 240.21238 * 19 17 15 21 21 C 1.47313 * 110.16051 * 60.80660 * 20 19 17 22 22 C 1.53208 * 108.80296 * 299.19140 * 21 20 19 23 23 N 1.47264 * 109.57990 * 177.62183 * 17 15 6 24 24 C 1.47315 * 110.15497 * 180.60091 * 23 17 15 25 25 C 1.47315 * 110.15567 * 299.18489 * 20 19 17 26 26 H 1.08998 * 109.58500 * 301.01647 * 25 20 19 27 27 C 1.52998 * 109.58545 * 180.60504 * 25 20 19 28 28 H 1.09000 * 109.46681 * 299.99747 * 1 2 3 29 29 H 1.09002 * 109.47388 * 59.99776 * 1 2 3 30 30 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47594 * 59.99759 * 5 3 2 32 32 H 1.09002 * 109.47230 * 299.99759 * 5 3 2 33 33 H 0.97003 * 120.00100 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.58519 * 0.02562 * 19 17 15 35 35 H 1.08997 * 109.57920 * 120.28484 * 19 17 15 36 36 H 1.09004 * 109.57678 * 58.97989 * 21 20 19 37 37 H 1.09001 * 109.58241 * 179.39192 * 21 20 19 38 38 H 1.08999 * 109.58623 * 119.79796 * 22 21 20 39 39 H 1.09005 * 109.57669 * 240.06801 * 22 21 20 40 40 H 1.09001 * 109.58829 * 58.98098 * 24 23 17 41 41 H 1.09007 * 109.58115 * 179.39419 * 24 23 17 42 42 H 1.09002 * 109.46948 * 59.99706 * 27 25 20 43 43 H 1.08996 * 109.47394 * 180.02562 * 27 25 20 44 44 H 1.09003 * 109.47094 * 300.00144 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.3034 3.2988 1.1803 8 1 4.8947 4.2025 1.1723 9 6 3.8688 2.7636 2.3866 10 7 2.8739 1.9053 2.4041 11 14 4.6987 3.2641 3.9836 12 1 4.0534 2.5578 5.1194 13 1 6.1378 2.9019 3.9282 14 1 4.5644 4.7308 4.1727 15 6 4.0476 3.3636 -1.1594 16 8 3.7634 2.8157 -2.2035 17 6 4.4754 4.8086 -1.1587 18 1 5.4625 4.8971 -0.7050 19 6 3.4670 5.6423 -0.3612 20 7 2.8848 6.6615 -1.2508 21 6 2.1839 6.0148 -2.3735 22 6 3.1922 5.1813 -3.1708 23 7 4.5214 5.3103 -2.5425 24 6 4.9524 6.7189 -2.5577 25 6 3.9408 7.5535 -1.7602 26 1 4.4462 8.0362 -0.9238 27 6 3.3202 8.6155 -2.6701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9558 0.7809 -0.8907 32 1 3.9564 0.7806 0.8892 33 1 2.5707 1.5314 3.2463 34 1 2.6770 4.9946 0.0189 35 1 3.9733 6.1285 0.4726 36 1 1.3974 5.3660 -1.9880 37 1 1.7479 6.7768 -3.0195 38 1 2.8866 4.1350 -3.1658 39 1 3.2353 5.5443 -4.1978 40 1 5.9376 6.8045 -2.0992 41 1 4.9935 7.0773 -3.5863 42 1 2.5943 9.1995 -2.1043 43 1 4.1030 9.2740 -3.0463 44 1 2.8212 8.1291 -3.5083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521034664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = -83.176372 kcal Electronic energy + Delta-G solvation = -28783.078787 eV Core-core repulsion = 24929.470536 eV Total energy + Delta-G solvation = -3853.608251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49596 -41.16358 -39.74316 -37.29043 -36.56415 -34.41787 -33.66135 -33.28090 -32.30006 -30.28895 -28.45209 -27.64662 -26.57611 -24.81866 -24.44038 -23.30832 -22.12685 -21.13608 -19.60459 -18.71278 -18.47733 -18.35759 -17.50943 -17.37922 -17.20756 -16.84140 -16.53339 -16.08567 -15.56310 -15.52301 -14.72101 -14.40213 -14.22798 -14.19679 -14.02393 -13.99156 -13.87295 -13.47254 -13.37921 -13.15383 -13.03142 -12.87136 -12.64582 -12.52089 -12.37275 -12.31242 -12.15901 -12.04659 -11.59552 -11.56988 -11.42615 -11.33730 -10.92327 -10.76304 -10.18578 -9.84584 -8.62895 -8.35902 -5.94121 1.42416 1.50260 1.58744 1.68521 1.80017 2.21155 2.33297 2.59551 2.86066 3.11761 3.25493 3.72762 3.86078 3.88754 3.94238 4.18579 4.25469 4.32650 4.33591 4.36071 4.39567 4.41124 4.53068 4.53919 4.64396 4.68640 4.72178 4.74722 4.82520 4.87985 4.96324 5.00382 5.08703 5.19247 5.30748 5.40220 5.61586 5.64859 5.73767 5.84362 6.11528 6.27539 6.34101 7.08452 7.22662 7.47915 7.88834 8.70364 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.006313 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.016391 B = 4434.343955 C = 5601.667294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.379 6.379 3 C 0.487 3.513 4 O -0.534 6.534 5 C 0.156 3.844 6 N -0.436 5.436 7 C -0.346 4.346 8 H 0.113 0.887 9 C 0.001 3.999 10 N -0.895 5.895 11 Si 0.990 3.010 12 H -0.289 1.289 13 H -0.262 1.262 14 H -0.268 1.268 15 C 0.471 3.529 16 O -0.611 6.611 17 C 0.054 3.946 18 H 0.106 0.894 19 C 0.050 3.950 20 N -0.519 5.519 21 C 0.019 3.981 22 C 0.003 3.997 23 N -0.508 5.508 24 C 0.017 3.983 25 C 0.032 3.968 26 H 0.093 0.907 27 C -0.132 4.132 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.271 0.729 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 6.377 -4.306 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.330 3.670 4 O -0.422 6.422 5 C 0.030 3.970 6 N -0.155 5.155 7 C -0.473 4.473 8 H 0.130 0.870 9 C -0.201 4.201 10 N -0.534 5.534 11 Si 0.814 3.186 12 H -0.215 1.215 13 H -0.186 1.186 14 H -0.193 1.193 15 C 0.261 3.739 16 O -0.498 6.498 17 C -0.059 4.059 18 H 0.124 0.876 19 C -0.081 4.081 20 N -0.241 5.241 21 C -0.111 4.111 22 C -0.126 4.126 23 N -0.229 5.229 24 C -0.113 4.113 25 C -0.078 4.078 26 H 0.111 0.889 27 C -0.189 4.189 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.445 6.285 -4.658 7.955 hybrid contribution -0.385 -0.287 1.201 1.293 sum 1.059 5.999 -3.457 7.004 Atomic orbital electron populations 1.23266 0.76258 1.04780 1.01085 1.86424 1.24059 1.33975 1.85110 1.24037 0.92572 0.80754 0.69619 1.90480 1.67264 1.37581 1.46849 1.20465 0.87143 0.85821 1.03522 1.43512 1.57202 1.08158 1.06579 1.19861 1.32651 1.12352 0.82396 0.86991 1.26025 0.94802 0.96900 1.02422 1.69896 1.23363 1.31651 1.28477 0.85025 0.78627 0.78511 0.76452 1.21497 1.18624 1.19313 1.20468 0.81430 0.88780 0.83238 1.90398 1.55995 1.70742 1.32634 1.21919 1.00993 0.92026 0.90995 0.87601 1.22519 0.97149 0.93106 0.95298 1.63972 1.25925 1.17617 1.16552 1.22788 0.96714 0.98042 0.93524 1.23136 0.88555 1.02610 0.98331 1.63744 1.26194 1.18657 1.14310 1.23216 0.99106 0.86429 1.02514 1.22676 0.92161 0.94072 0.98843 0.88858 1.21822 1.01443 0.97303 0.98333 0.93671 0.93242 0.84850 0.89593 0.86145 0.91930 0.92745 0.89142 0.93983 0.87882 0.90250 0.89303 0.89351 0.88253 0.92221 0.89670 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.56 16 2 O -0.38 -16.43 10.57 -51.44 -0.54 -16.97 16 3 C 0.49 24.47 6.09 71.24 0.43 24.90 16 4 O -0.53 -30.09 15.69 21.98 0.34 -29.74 16 5 C 0.16 7.57 5.13 85.63 0.44 8.01 16 6 N -0.44 -21.59 2.16 -639.60 -1.38 -22.97 16 7 C -0.35 -16.58 7.83 84.04 0.66 -15.92 16 8 H 0.11 4.98 5.88 -2.91 -0.02 4.96 16 9 C 0.00 0.03 4.93 84.93 0.42 0.45 16 10 N -0.90 -45.73 9.16 21.66 0.20 -45.53 16 11 Si 0.99 38.07 29.59 68.60 2.03 40.10 16 12 H -0.29 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 14 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 15 C 0.47 22.88 6.26 87.66 0.55 23.43 16 16 O -0.61 -32.36 13.32 -3.06 -0.04 -32.40 16 17 C 0.05 2.18 2.02 44.18 0.09 2.27 16 18 H 0.11 4.04 7.54 -2.39 -0.02 4.03 16 19 C 0.05 1.98 4.34 86.31 0.37 2.36 16 20 N -0.52 -17.70 5.24 -865.98 -4.54 -22.24 16 21 C 0.02 0.67 5.75 86.29 0.50 1.17 16 22 C 0.00 0.12 5.70 86.24 0.49 0.61 16 23 N -0.51 -18.33 5.09 -869.60 -4.42 -22.75 16 24 C 0.02 0.44 5.81 86.39 0.50 0.94 16 25 C 0.03 0.83 3.05 45.00 0.14 0.97 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 C -0.13 -2.61 8.64 71.98 0.62 -1.99 16 28 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.09 3.96 7.62 -2.39 -0.02 3.95 16 32 H 0.12 5.78 6.45 -2.39 -0.02 5.77 16 33 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.05 2.72 7.04 -2.39 -0.02 2.70 16 35 H 0.09 3.34 7.91 -2.39 -0.02 3.32 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.10 2.95 6.17 -2.39 -0.01 2.94 16 38 H 0.08 3.66 5.12 -2.39 -0.01 3.65 16 39 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 2.25 7.62 -2.38 -0.02 2.23 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.12 6.31 -2.39 -0.02 1.10 16 Total: -1.00 -65.63 337.47 -0.94 -66.57 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 1.01 Total: 36.19 kcal Atomic # 6 Polarization: 43.35 SS G_CDS: 6.41 Total: 49.76 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -10.15 Total: -113.50 kcal Atomic # 8 Polarization: -78.87 SS G_CDS: -0.24 Total: -79.11 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -65.63 -0.94 -66.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521034664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.605 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds