Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46895 * 179.97438 * 18 16 15 20 20 N 1.46508 * 109.47345 * 180.02562 * 19 18 16 21 21 C 1.33876 * 122.75908 * 269.71099 * 20 19 18 22 22 O 1.21222 * 125.40090 * 359.97438 * 21 20 19 23 23 C 1.51316 * 109.20193 * 179.83554 * 21 20 19 24 24 C 1.54222 * 103.55699 * 0.39086 * 23 21 20 25 25 C 1.33874 * 122.75923 * 89.99915 * 20 19 18 26 26 O 1.21220 * 125.40101 * 359.97438 * 25 20 19 27 27 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 31 31 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 35 35 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 36 36 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 37 37 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 38 38 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 39 39 H 1.09005 * 109.47491 * 300.00261 * 19 18 16 40 40 H 1.09004 * 109.47491 * 60.00514 * 19 18 16 41 41 H 1.09001 * 110.79825 * 241.77605 * 23 21 20 42 42 H 1.09001 * 110.54377 * 118.87670 * 23 21 20 43 43 H 1.08999 * 110.60825 * 241.25953 * 24 23 21 44 44 H 1.09002 * 110.61226 * 118.28976 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 1.9638 -0.1456 -6.0113 10 14 0.6521 1.8757 -4.6422 11 1 1.5865 3.0243 -4.5285 12 1 -0.2127 2.0574 -5.8358 13 1 -0.1942 1.8035 -3.4242 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.1060 -0.3568 6.1426 20 7 1.7183 0.3997 7.3358 21 6 2.4915 1.3514 7.8731 22 8 3.5755 1.6955 7.4534 23 6 1.7964 1.9318 9.0854 24 6 0.4781 1.1352 9.1621 25 6 0.5642 0.1923 7.9817 26 8 -0.2786 -0.6214 7.6701 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8594 -2.3517 33 1 1.7035 0.3530 -6.8015 34 1 1.6053 -1.7197 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3518 37 1 2.0324 1.3633 4.8474 38 1 0.5109 0.4440 4.9368 39 1 1.6704 -1.3550 6.1882 40 1 3.1923 -0.4361 6.0994 41 1 1.5954 2.9938 8.9447 42 1 2.3943 1.7713 9.9825 43 1 -0.3789 1.8009 9.0595 44 1 0.4213 0.5763 10.0961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698753608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = -97.404055 kcal Electronic energy + Delta-G solvation = -25008.420080 eV Core-core repulsion = 21154.194870 eV Total energy + Delta-G solvation = -3854.225210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40281 -39.91365 -39.07533 -37.10237 -36.39008 -34.72063 -34.49612 -32.59939 -31.16686 -30.39532 -26.87805 -26.75483 -25.94153 -24.36047 -22.92135 -22.00755 -20.75555 -20.08332 -19.89544 -18.15136 -17.58554 -17.47663 -17.01354 -16.74599 -16.15147 -15.92111 -15.19183 -14.92061 -14.74832 -14.60862 -14.46017 -14.43448 -14.00545 -13.76493 -13.56874 -13.29367 -13.18542 -12.87507 -12.58081 -12.47831 -12.22726 -12.01499 -11.70049 -11.46922 -11.17238 -11.06668 -10.78214 -10.65067 -10.63306 -10.56132 -10.42607 -10.16581 -9.95143 -9.59209 -9.16561 -8.91571 -7.24749 -5.77685 -3.13479 0.96552 1.92020 2.14183 2.43744 3.05983 3.34360 3.36849 3.43105 3.48715 3.62124 3.80667 4.19022 4.33423 4.49142 4.52917 4.57223 4.82646 4.83992 4.94438 4.94859 4.99341 5.04266 5.06312 5.18235 5.21247 5.47406 5.52770 5.63763 5.71549 5.83982 5.86762 6.05771 6.20606 6.28926 6.33769 6.43298 6.63812 6.72889 6.76822 7.22153 7.31148 7.98489 8.02206 8.41089 9.19862 9.91914 10.11588 11.40724 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.002042 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.866409 B =13705.485847 C =13809.523650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.724 5.724 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.157 4.157 19 C 0.114 3.886 20 N -0.576 5.576 21 C 0.524 3.476 22 O -0.476 6.476 23 C -0.157 4.157 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.477 6.477 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 6.416 35.433 36.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.304 3.696 17 O -0.417 6.417 18 C -0.198 4.198 19 C -0.007 4.007 20 N -0.319 5.319 21 C 0.313 3.687 22 O -0.347 6.347 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.313 3.687 26 O -0.348 6.348 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.194 0.806 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.594 5.235 34.891 35.465 hybrid contribution -0.981 1.597 -0.239 1.889 sum -4.575 6.832 34.652 35.614 Atomic orbital electron populations 1.21820 0.94752 1.02309 1.01234 1.21609 0.96636 1.00552 0.94591 0.90581 1.20554 0.97245 0.94243 0.84275 1.42682 1.67707 1.27268 1.02357 1.19067 1.29294 1.07282 0.81731 0.89161 1.24683 1.00789 0.98686 0.95107 1.69698 1.51240 1.40320 0.96905 0.86540 0.80272 0.84786 0.76829 1.21106 1.21714 1.20410 1.21425 1.00406 0.95325 0.82598 1.46042 1.57630 1.27895 1.05960 1.20201 0.79453 0.85576 0.84412 1.90738 1.39895 1.24387 1.86723 1.21930 1.03762 1.01050 0.93045 1.21506 1.02991 0.95405 0.80800 1.46847 1.20726 1.36279 1.28066 1.20896 0.84451 0.78396 0.85001 1.90820 1.18834 1.60161 1.64906 1.22486 0.96288 1.02778 0.98145 1.22490 0.99836 0.98648 0.98708 1.20901 0.80178 0.83357 0.84308 1.90818 1.40758 1.34409 1.68783 0.91750 0.92341 0.93702 0.95124 0.95181 0.80649 0.93048 0.91026 0.91012 0.76507 0.88260 0.88281 0.87796 0.87768 0.85984 0.86064 0.86008 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.15 0.33 -1.60 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 4 C 0.16 3.11 5.65 -4.04 -0.02 3.08 16 5 N -0.75 -17.71 5.13 -59.91 -0.31 -18.02 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.09 16 7 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 10 Si 0.89 21.99 27.73 -169.99 -4.71 17.27 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 14 C 0.13 1.62 5.06 -4.04 -0.02 1.60 16 15 N -0.72 -7.71 5.28 -60.30 -0.32 -8.03 16 16 C 0.52 6.00 7.83 -10.99 -0.09 5.91 16 17 O -0.54 -8.30 15.98 5.55 0.09 -8.22 16 18 C -0.16 -1.29 6.02 -27.88 -0.17 -1.46 16 19 C 0.11 1.01 4.85 -4.04 -0.02 0.99 16 20 N -0.58 -4.03 2.55 -115.33 -0.29 -4.32 16 21 C 0.52 3.39 8.08 -11.08 -0.09 3.30 16 22 O -0.48 -4.95 17.47 5.61 0.10 -4.85 16 23 C -0.16 -0.25 7.03 -26.94 -0.19 -0.44 16 24 C -0.16 -0.25 7.03 -26.94 -0.19 -0.44 16 25 C 0.52 3.37 8.08 -11.08 -0.09 3.28 16 26 O -0.48 -4.91 17.48 5.61 0.10 -4.81 16 27 H 0.06 1.00 7.18 -51.93 -0.37 0.63 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.36 8.17 4.72 -40.82 -0.19 7.98 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.40 3.29 7.66 -40.82 -0.31 2.98 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.02 7.79 -51.93 -0.40 0.62 16 40 H 0.10 1.03 7.78 -51.93 -0.40 0.63 16 41 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.12 0.01 8.14 -51.93 -0.42 -0.42 16 43 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -37.60 369.71 -6.75 -44.35 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.72 Total: 4.47 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.02 Total: 5.29 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.15 Total: -59.07 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.28 Total: -17.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.60 -6.75 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698753608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.057 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds