Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46895 * 179.97438 * 18 16 15 20 20 N 1.46508 * 109.47345 * 180.02562 * 19 18 16 21 21 C 1.33876 * 122.75908 * 269.71099 * 20 19 18 22 22 O 1.21222 * 125.40090 * 359.97438 * 21 20 19 23 23 C 1.51316 * 109.20193 * 179.83554 * 21 20 19 24 24 C 1.54222 * 103.55699 * 0.39086 * 23 21 20 25 25 C 1.33874 * 122.75923 * 89.99915 * 20 19 18 26 26 O 1.21220 * 125.40101 * 359.97438 * 25 20 19 27 27 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 30 30 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 31 31 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 35 35 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 36 36 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 37 37 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 38 38 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 39 39 H 1.09005 * 109.47491 * 300.00261 * 19 18 16 40 40 H 1.09004 * 109.47491 * 60.00514 * 19 18 16 41 41 H 1.09001 * 110.79825 * 241.77605 * 23 21 20 42 42 H 1.09001 * 110.54377 * 118.87670 * 23 21 20 43 43 H 1.08999 * 110.60825 * 241.25953 * 24 23 21 44 44 H 1.09002 * 110.61226 * 118.28976 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 1.9638 -0.1456 -6.0113 10 14 0.6521 1.8757 -4.6422 11 1 1.5865 3.0243 -4.5285 12 1 -0.2127 2.0574 -5.8358 13 1 -0.1942 1.8035 -3.4242 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.1060 -0.3568 6.1426 20 7 1.7183 0.3997 7.3358 21 6 2.4915 1.3514 7.8731 22 8 3.5755 1.6955 7.4534 23 6 1.7964 1.9318 9.0854 24 6 0.4781 1.1352 9.1621 25 6 0.5642 0.1923 7.9817 26 8 -0.2786 -0.6214 7.6701 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8594 -2.3517 33 1 1.7035 0.3530 -6.8015 34 1 1.6053 -1.7197 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3518 37 1 2.0324 1.3633 4.8474 38 1 0.5109 0.4440 4.9368 39 1 1.6704 -1.3550 6.1882 40 1 3.1923 -0.4361 6.0994 41 1 1.5954 2.9938 8.9447 42 1 2.3943 1.7713 9.9825 43 1 -0.3789 1.8009 9.0595 44 1 0.4213 0.5763 10.0961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698753608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = -126.519713 kcal Electronic energy + Delta-G solvation = -25009.682629 eV Core-core repulsion = 21154.194870 eV Total energy + Delta-G solvation = -3855.487760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89003 -40.89330 -39.66117 -38.42828 -37.00716 -36.10870 -35.13837 -34.20709 -32.55037 -31.47358 -27.96235 -27.43485 -27.08734 -25.37622 -23.79650 -23.29168 -21.77197 -21.34136 -20.44157 -19.67577 -18.70260 -17.98374 -17.57848 -17.53810 -17.22538 -16.82368 -16.46955 -16.01740 -15.74441 -15.67267 -15.29909 -15.05276 -14.92299 -14.81528 -14.66118 -14.51432 -14.10408 -13.81335 -13.66439 -13.58856 -13.42013 -13.21645 -12.88734 -12.43462 -12.20576 -12.14591 -12.07255 -12.03591 -11.77836 -11.72396 -11.68907 -11.18877 -11.08546 -11.00167 -10.86077 -10.17132 -9.32128 -8.04043 -5.38518 0.49295 1.36078 1.40101 1.41494 1.48745 1.51043 1.68239 2.17986 2.47569 3.22636 3.26804 3.29464 3.52207 3.55418 3.65862 3.77033 3.81818 3.90733 4.00190 4.10191 4.22002 4.29848 4.36574 4.48627 4.51197 4.66300 4.74783 4.76628 4.82042 4.90012 4.93846 4.97830 4.98914 5.07222 5.24807 5.33033 5.43325 5.73650 5.81290 6.19313 6.32037 6.44148 6.72398 7.06153 7.13465 7.80803 8.01922 9.17487 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.002042 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.866409 B =13705.485847 C =13809.523650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.068 4.068 9 N -0.985 5.985 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.135 3.865 15 N -0.712 5.712 16 C 0.516 3.484 17 O -0.584 6.584 18 C -0.142 4.142 19 C 0.113 3.887 20 N -0.579 5.579 21 C 0.519 3.481 22 O -0.523 6.523 23 C -0.141 4.141 24 C -0.140 4.140 25 C 0.519 3.481 26 O -0.523 6.523 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.368 0.632 33 H 0.258 0.742 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.416 0.584 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 9.487 38.864 40.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.107 0.893 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.635 5.635 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.011 3.989 15 N -0.364 5.364 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.182 4.182 19 C -0.010 4.010 20 N -0.321 5.321 21 C 0.311 3.689 22 O -0.397 6.397 23 C -0.180 4.180 24 C -0.179 4.179 25 C 0.311 3.689 26 O -0.397 6.397 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.589 8.338 38.398 39.688 hybrid contribution -0.281 0.507 -1.285 1.410 sum -5.870 8.846 37.113 38.602 Atomic orbital electron populations 1.21806 0.93627 1.02307 1.02145 1.21394 0.97361 1.00470 0.92437 0.89288 1.20709 0.96971 0.94211 0.84958 1.42618 1.67657 1.27840 1.01867 1.19032 1.28048 1.05860 0.84039 0.92962 1.25603 1.02671 1.03100 0.94534 1.69898 1.53271 1.42393 0.97945 0.85342 0.78803 0.79466 0.77750 1.20258 1.22270 1.17014 1.21147 0.99660 0.95126 0.83003 1.45870 1.57376 1.28153 1.04996 1.20764 0.78496 0.85126 0.85323 1.90724 1.41880 1.26457 1.87328 1.21841 1.04774 1.00860 0.90770 1.21292 1.01819 0.95365 0.82510 1.47031 1.21390 1.36239 1.27488 1.21821 0.83741 0.77550 0.85816 1.90800 1.20889 1.61536 1.66486 1.22605 0.95596 1.03712 0.96060 1.22611 1.00702 0.97739 0.96886 1.21820 0.78932 0.83138 0.85023 1.90798 1.42100 1.36563 1.70194 0.93370 0.92904 0.90162 0.95816 0.95824 0.79747 0.93288 0.91864 0.92108 0.74619 0.86579 0.86477 0.89511 0.89574 0.83374 0.83790 0.83386 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.94 71.98 0.64 -2.78 16 2 C -0.10 -2.58 2.46 -10.80 -0.03 -2.61 16 3 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.16 5.95 5.65 86.38 0.49 6.43 16 5 N -0.75 -34.91 5.13 -343.46 -1.76 -36.67 16 6 C -0.24 -13.85 10.47 84.03 0.88 -12.97 16 7 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 9 N -0.98 -63.87 13.97 21.65 0.30 -63.56 16 10 Si 0.96 44.96 27.73 68.60 1.90 46.86 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 13 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 14 C 0.14 3.35 5.06 86.38 0.44 3.78 16 15 N -0.71 -13.81 5.28 -463.07 -2.45 -16.26 16 16 C 0.52 11.57 7.83 87.66 0.69 12.26 16 17 O -0.58 -18.37 15.98 -3.05 -0.05 -18.42 16 18 C -0.14 -2.16 6.02 29.85 0.18 -1.98 16 19 C 0.11 2.03 4.85 86.38 0.42 2.45 16 20 N -0.58 -7.49 2.55 -756.64 -1.93 -9.42 16 21 C 0.52 5.83 8.08 87.99 0.71 6.54 16 22 O -0.52 -10.56 17.47 -2.85 -0.05 -10.61 16 23 C -0.14 0.12 7.03 30.46 0.21 0.34 16 24 C -0.14 0.13 7.03 30.46 0.21 0.35 16 25 C 0.52 5.75 8.08 87.99 0.71 6.46 16 26 O -0.52 -10.38 17.48 -2.85 -0.05 -10.43 16 27 H 0.05 1.34 7.18 -2.38 -0.02 1.33 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.37 7.18 -2.39 -0.02 1.36 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.37 15.86 4.72 -92.70 -0.44 15.42 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.42 5.45 7.66 -92.71 -0.71 4.74 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.83 7.79 -2.38 -0.02 1.82 16 40 H 0.09 1.84 7.78 -2.39 -0.02 1.82 16 41 H 0.15 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.14 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.15 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.14 -0.67 8.14 -2.39 -0.02 -0.69 16 Total: -1.00 -86.87 369.71 1.75 -85.12 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.18 Total: 18.69 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.02 Total: 14.71 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.84 Total: -125.92 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.15 Total: -39.46 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -86.87 1.75 -85.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698753608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.404 kcal (2) G-P(sol) polarization free energy of solvation -86.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds