Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46566 * 2 1 4 4 C 1.50690 * 109.47265 * 120.00205 * 2 1 3 5 5 O 1.21276 * 120.00221 * 100.55778 * 4 2 1 6 6 N 1.34780 * 119.99887 * 280.55820 * 4 2 1 7 7 C 1.46504 * 119.99990 * 5.03276 * 6 4 2 8 8 C 1.46501 * 120.00183 * 185.02879 * 6 4 2 9 9 C 1.53004 * 109.47274 * 270.00084 * 8 6 4 10 10 N 1.46496 * 109.46936 * 179.97438 * 9 8 6 11 11 C 1.46507 * 119.99832 * 90.00086 * 10 9 8 12 12 C 1.36931 * 120.00508 * 270.00178 * 10 9 8 13 13 H 1.08005 * 119.99973 * 21.71786 * 12 10 9 14 14 C 1.38812 * 120.00423 * 201.72210 * 12 10 9 15 15 N 1.31624 * 119.99693 * 11.07611 * 14 12 10 16 16 Si 1.86800 * 120.00367 * 191.08139 * 14 12 10 17 17 H 1.48500 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47315 * 119.99574 * 16 14 12 19 19 H 1.48494 * 109.47266 * 239.99952 * 16 14 12 20 20 N 1.46502 * 109.47197 * 240.00479 * 2 1 3 21 21 C 1.33882 * 122.75816 * 299.70598 * 20 2 1 22 22 O 1.21226 * 125.39727 * 359.97438 * 21 20 2 23 23 C 1.51312 * 109.20293 * 179.84236 * 21 20 2 24 24 C 1.54224 * 103.55904 * 0.38746 * 23 21 20 25 25 C 1.33871 * 122.76341 * 119.99724 * 20 2 1 26 26 O 1.21222 * 125.39940 * 0.02562 * 25 20 2 27 27 H 1.09000 * 109.47116 * 171.52100 * 1 2 3 28 28 H 1.08994 * 109.47341 * 291.51802 * 1 2 3 29 29 H 1.09004 * 109.47503 * 51.52208 * 1 2 3 30 30 H 1.09008 * 109.46865 * 266.11745 * 7 6 4 31 31 H 1.08995 * 109.46953 * 26.11825 * 7 6 4 32 32 H 1.08999 * 109.47165 * 146.12510 * 7 6 4 33 33 H 1.09006 * 109.47085 * 30.00457 * 8 6 4 34 34 H 1.09000 * 109.47220 * 149.99989 * 8 6 4 35 35 H 1.08996 * 109.47008 * 299.99767 * 9 8 6 36 36 H 1.09003 * 109.46863 * 60.00301 * 9 8 6 37 37 H 1.09000 * 109.46880 * 94.27500 * 11 10 9 38 38 H 1.08998 * 109.47094 * 214.27970 * 11 10 9 39 39 H 1.08998 * 109.46963 * 334.28278 * 11 10 9 40 40 H 0.97003 * 119.99385 * 180.02562 * 15 14 12 41 41 H 1.08998 * 110.79560 * 241.77603 * 23 21 20 42 42 H 1.09004 * 110.54972 * 118.87967 * 23 21 20 43 43 H 1.08998 * 110.60614 * 241.25997 * 24 23 21 44 44 H 1.08996 * 110.74145 * 118.35506 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 8 2.4159 -1.8583 1.1536 6 7 2.0553 -0.0700 2.4161 7 6 1.4906 1.2768 2.5323 8 6 2.6449 -0.7207 3.5887 9 6 1.5658 -1.5143 4.3282 10 7 2.1556 -2.1655 5.5004 11 6 2.1810 -1.4697 6.7895 12 6 2.6832 -3.4244 5.3915 13 1 2.9887 -3.8001 4.4261 14 6 2.8252 -4.2177 6.5217 15 7 2.2601 -3.8567 7.6543 16 14 3.8183 -5.7975 6.4352 17 1 4.3454 -5.9761 5.0584 18 1 4.9504 -5.7235 7.3934 19 1 2.9483 -6.9489 6.7849 20 7 2.0184 -0.6905 -1.1962 21 6 1.7338 -1.9719 -1.4599 22 8 1.0581 -2.6988 -0.7638 23 6 2.3866 -2.3680 -2.7662 24 6 3.1136 -1.0828 -3.2115 25 6 2.7905 -0.0938 -2.1127 26 8 3.1709 1.0563 -2.0691 27 1 -0.3633 -1.0164 -0.1515 28 1 -0.3634 0.3769 0.9560 29 1 -0.3634 0.6394 -0.8045 30 1 2.2804 2.0152 2.3932 31 1 0.7243 1.4165 1.7699 32 1 1.0473 1.4009 3.5202 33 1 3.4380 -1.3966 3.2688 34 1 3.0594 0.0364 4.2544 35 1 0.7728 -0.8384 4.6481 36 1 1.1514 -2.2715 3.6625 37 1 1.3097 -1.7602 7.3764 38 1 3.0889 -1.7383 7.3295 39 1 2.1632 -0.3929 6.6216 40 1 2.3597 -4.4110 8.4441 41 1 1.6362 -2.6586 -3.5014 42 1 3.0999 -3.1769 -2.6077 43 1 2.7248 -0.7340 -4.1681 44 1 4.1890 -1.2494 -3.2735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698989568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -55.469547 kcal Electronic energy + Delta-G solvation = -27059.931112 eV Core-core repulsion = 23207.524319 eV Total energy + Delta-G solvation = -3852.406793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22734 -39.61183 -38.62537 -36.15926 -35.88693 -35.00283 -34.40180 -31.54381 -30.58332 -28.46503 -26.66760 -26.37004 -25.81439 -24.82873 -23.30090 -22.55135 -20.83887 -19.99553 -18.73280 -17.46535 -17.43942 -16.88473 -16.62232 -16.12231 -15.70942 -15.35955 -14.82065 -14.53616 -14.34409 -14.21143 -14.06894 -13.81230 -13.49949 -13.43159 -13.22979 -13.06557 -12.77822 -12.50474 -12.32527 -12.17819 -12.05702 -11.77205 -11.62570 -11.25190 -10.83998 -10.79187 -10.69335 -10.47409 -10.37175 -10.16468 -10.05080 -9.81498 -9.74430 -9.32430 -8.66825 -8.35158 -6.68372 -5.65207 -3.10926 1.40091 2.13785 2.57499 2.72656 3.20672 3.44173 3.51067 3.55829 3.82722 3.98892 4.16968 4.35805 4.53834 4.59333 4.70609 4.71568 4.97934 5.04322 5.12618 5.28468 5.31489 5.34854 5.38009 5.48887 5.51091 5.63942 5.67816 5.76874 5.88552 6.17793 6.25075 6.56785 6.66368 6.68256 6.78925 7.02829 7.16457 7.44014 7.52668 7.68077 7.77352 7.92255 8.30519 8.47459 9.32224 9.93934 10.41207 11.40271 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003687 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.919637 B = 7591.762897 C = 8545.744506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 H 0.123 0.877 4 C 0.500 3.500 5 O -0.507 6.507 6 N -0.609 5.609 7 C 0.068 3.932 8 C 0.096 3.904 9 C 0.143 3.857 10 N -0.601 5.601 11 C 0.165 3.835 12 C -0.249 4.249 13 H 0.071 0.929 14 C -0.001 4.001 15 N -0.913 5.913 16 Si 0.905 3.095 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.290 1.290 20 N -0.562 5.562 21 C 0.525 3.475 22 O -0.445 6.445 23 C -0.156 4.156 24 C -0.154 4.154 25 C 0.529 3.471 26 O -0.491 6.491 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.046 0.954 39 H -0.006 1.006 40 H 0.251 0.749 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 11.858 -21.836 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 H 0.141 0.859 4 C 0.284 3.716 5 O -0.380 6.380 6 N -0.343 5.343 7 C -0.075 4.075 8 C -0.028 4.028 9 C 0.015 3.985 10 N -0.324 5.324 11 C 0.020 3.980 12 C -0.379 4.379 13 H 0.089 0.911 14 C -0.198 4.198 15 N -0.559 5.559 16 Si 0.735 3.265 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.217 1.217 20 N -0.306 5.306 21 C 0.313 3.687 22 O -0.313 6.313 23 C -0.196 4.196 24 C -0.194 4.194 25 C 0.318 3.682 26 O -0.363 6.363 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.061 0.939 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.068 11.344 -21.238 24.166 hybrid contribution 0.560 -0.663 0.261 0.906 sum -1.508 10.680 -20.977 23.588 Atomic orbital electron populations 1.22174 0.91242 1.04960 1.03842 1.21268 0.97103 0.97799 0.83450 0.85917 1.20394 0.79694 0.87126 0.84389 1.90797 1.46205 1.16076 1.84967 1.47886 1.59923 1.16891 1.09627 1.21979 0.98566 0.83392 1.03574 1.22540 0.98839 0.96831 0.84608 1.20971 0.92621 0.95142 0.89798 1.43887 1.68687 1.15144 1.04704 1.20814 1.01288 0.89218 0.86677 1.19331 1.33674 0.90448 0.94420 0.91108 1.25002 1.00201 0.98040 0.96551 1.70093 1.46138 1.38825 1.00808 0.86161 0.79560 0.83301 0.77499 1.20239 1.21668 1.21714 1.46570 1.47525 1.14500 1.22015 1.20678 0.80157 0.80375 0.87514 1.90822 1.34937 1.53657 1.51866 1.22456 1.02120 0.99348 0.95633 1.22444 1.04568 0.93537 0.98810 1.20863 0.75956 0.87952 0.83441 1.90764 1.51589 1.17016 1.76950 0.89911 0.89673 0.90978 0.92536 0.91008 0.90430 0.90099 0.91303 0.94842 0.93047 0.95330 0.93518 0.98754 0.93922 0.86298 0.86147 0.86201 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.88 37.16 0.33 -1.36 16 2 C 0.11 1.36 2.27 -69.09 -0.16 1.20 16 3 H 0.12 1.33 6.67 -51.93 -0.35 0.98 16 4 C 0.50 8.28 6.78 -10.99 -0.07 8.20 16 5 O -0.51 -10.70 13.60 -16.44 -0.22 -10.93 16 6 N -0.61 -9.37 2.87 -181.57 -0.52 -9.89 16 7 C 0.07 0.71 9.85 59.85 0.59 1.30 16 8 C 0.10 1.82 5.71 -4.04 -0.02 1.80 16 9 C 0.14 3.17 5.97 -4.04 -0.02 3.15 16 10 N -0.60 -15.92 2.93 -181.12 -0.53 -16.45 16 11 C 0.16 4.16 8.96 59.85 0.54 4.70 16 12 C -0.25 -7.30 9.68 -15.06 -0.15 -7.45 16 13 H 0.07 2.11 7.85 -52.48 -0.41 1.70 16 14 C 0.00 -0.02 5.14 -17.43 -0.09 -0.11 16 15 N -0.91 -27.56 10.53 55.49 0.58 -26.98 16 16 Si 0.90 23.08 29.57 -169.99 -5.03 18.05 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 N -0.56 -6.70 2.41 -109.49 -0.26 -6.96 16 21 C 0.53 6.53 6.71 -11.08 -0.07 6.45 16 22 O -0.45 -7.53 14.43 -16.40 -0.24 -7.77 16 23 C -0.16 -1.04 7.03 -26.94 -0.19 -1.23 16 24 C -0.15 -0.87 7.03 -26.94 -0.19 -1.05 16 25 C 0.53 5.45 8.08 -11.08 -0.09 5.36 16 26 O -0.49 -6.36 17.23 5.61 0.10 -6.26 16 27 H 0.08 1.04 6.43 -51.93 -0.33 0.71 16 28 H 0.08 0.78 6.13 -51.93 -0.32 0.46 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.58 4.57 -51.93 -0.24 0.35 16 32 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 37 H 0.03 0.78 7.43 -51.93 -0.39 0.39 16 38 H 0.05 1.26 7.14 -51.93 -0.37 0.89 16 39 H -0.01 -0.13 8.04 -51.93 -0.42 -0.55 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -38.32 358.20 -6.88 -45.20 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -6.56 Total: -4.36 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 0.40 Total: 20.96 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.73 Total: -60.28 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.36 Total: -24.96 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.32 -6.88 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698989568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.270 kcal (2) G-P(sol) polarization free energy of solvation -38.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds