Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46922 * 2 1 4 4 C 1.53004 * 109.46749 * 119.99635 * 2 1 3 5 5 N 1.46499 * 109.46598 * 174.99903 * 4 2 1 6 6 C 1.36940 * 119.99786 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00116 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00310 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99965 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46865 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47382 * 119.99902 * 10 8 6 13 13 H 1.48497 * 109.47520 * 240.00190 * 10 8 6 14 14 N 1.46500 * 109.47098 * 239.99707 * 2 1 3 15 15 C 1.46501 * 119.99800 * 300.00234 * 14 2 1 16 16 C 1.34773 * 119.99996 * 120.00069 * 14 2 1 17 17 O 1.21277 * 120.00100 * 0.02562 * 16 14 2 18 18 C 1.50699 * 120.00068 * 179.97438 * 16 14 2 19 19 H 1.09002 * 109.46959 * 60.00140 * 18 16 14 20 20 C 1.53000 * 109.47083 * 299.99925 * 18 16 14 21 21 N 1.46499 * 109.47060 * 180.02562 * 18 16 14 22 22 C 1.33879 * 122.76486 * 59.70747 * 21 18 16 23 23 O 1.21225 * 125.39168 * 359.97438 * 22 21 18 24 24 C 1.51312 * 109.20501 * 179.84209 * 22 21 18 25 25 C 1.54230 * 103.56009 * 0.38819 * 24 22 21 26 26 C 1.33881 * 122.75931 * 240.00118 * 21 18 16 27 27 O 1.21224 * 125.39848 * 0.02562 * 26 21 18 28 28 H 1.09001 * 109.47094 * 300.00504 * 1 2 3 29 29 H 1.09006 * 109.46995 * 59.99827 * 1 2 3 30 30 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47244 * 295.00008 * 4 2 1 32 32 H 1.09000 * 109.46938 * 55.00131 * 4 2 1 33 33 H 0.96999 * 120.00429 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00222 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47088 * 269.99943 * 15 14 2 36 36 H 1.08992 * 109.47451 * 29.99834 * 15 14 2 37 37 H 1.09007 * 109.46824 * 150.00231 * 15 14 2 38 38 H 1.09004 * 109.46724 * 60.00424 * 20 18 16 39 39 H 1.09001 * 109.47194 * 179.97438 * 20 18 16 40 40 H 1.08992 * 109.47399 * 299.99938 * 20 18 16 41 41 H 1.09000 * 110.79948 * 241.78084 * 24 22 21 42 42 H 1.08997 * 110.54759 * 118.87826 * 24 22 21 43 43 H 1.09000 * 110.60860 * 241.26309 * 25 24 22 44 44 H 1.08994 * 110.73920 * 118.35523 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1837 -1.4388 2.2068 7 1 3.6466 -1.8446 3.0514 8 6 5.5671 -1.5389 2.1510 9 7 6.2217 -1.0447 1.1216 10 14 6.4999 -2.3737 3.5376 11 1 5.5394 -2.8400 4.5697 12 1 7.2507 -3.5364 2.9994 13 1 7.4509 -1.4088 4.1457 14 7 2.0184 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.0866 1.1252 -1.8912 18 6 3.2960 -0.7464 -3.3134 19 1 2.4484 -1.0893 -3.9068 20 6 4.1463 -1.9481 -2.8965 21 7 4.1103 0.1743 -4.1106 22 6 5.2171 0.7592 -3.6361 23 8 5.6699 0.6056 -2.5221 24 6 5.8150 1.6397 -4.7116 25 6 4.8462 1.4682 -5.8993 26 6 3.8057 0.5044 -5.3718 27 8 2.8479 0.0962 -5.9927 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -0.1583 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9824 -0.4622 0.4320 34 1 7.1883 -1.1150 1.0824 35 1 2.4157 -2.7378 -0.9715 36 1 0.6904 -2.3002 -0.9845 37 1 1.6238 -2.2853 -2.5001 38 1 3.5407 -2.6332 -2.3031 39 1 4.5096 -2.4623 -3.7862 40 1 4.9938 -1.6052 -2.3031 41 1 6.8148 1.2983 -4.9799 42 1 5.8408 2.6791 -4.3846 43 1 5.3639 1.0415 -6.7583 44 1 4.3874 2.4209 -6.1638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = -66.139784 kcal Electronic energy + Delta-G solvation = -28021.064820 eV Core-core repulsion = 24168.195331 eV Total energy + Delta-G solvation = -3852.869489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.94349 -39.63367 -38.34399 -36.38287 -35.62118 -34.53315 -33.76816 -31.95532 -30.27814 -29.51603 -26.84881 -26.09831 -25.61420 -24.49536 -22.63175 -22.29072 -21.47148 -19.44287 -18.57502 -17.29000 -17.16716 -16.98172 -16.55622 -16.13104 -15.49449 -15.01697 -14.67736 -14.54343 -14.06513 -13.94229 -13.79888 -13.64077 -13.51438 -13.31247 -13.19966 -12.87071 -12.47438 -12.27457 -12.23660 -12.10914 -11.96127 -11.62721 -11.53238 -11.38777 -11.31186 -10.80863 -10.71751 -10.48096 -10.35802 -10.01026 -9.95157 -9.71482 -9.61664 -9.17494 -8.79337 -8.25644 -6.80471 -5.61138 -2.92843 1.67891 2.43970 2.87456 2.92562 3.38565 3.47926 3.53274 3.55817 4.07306 4.24839 4.43152 4.59277 4.67809 4.78109 4.97830 5.08131 5.17807 5.30678 5.33098 5.37554 5.42649 5.51382 5.57403 5.57937 5.67699 5.68555 5.80089 5.85735 6.00686 6.12004 6.13883 6.22097 6.41592 6.47499 6.51978 6.76517 6.95878 7.00117 7.43291 7.67613 7.78762 8.01442 8.48196 8.53213 9.65004 10.24204 10.59955 11.58544 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.005263 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.788981 B = 5318.657080 C = 6587.628028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.099 0.901 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.245 4.245 7 H 0.068 0.932 8 C -0.010 4.010 9 N -0.916 5.916 10 Si 0.901 3.099 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.293 1.293 14 N -0.591 5.591 15 C 0.073 3.927 16 C 0.516 3.484 17 O -0.526 6.526 18 C 0.115 3.885 19 H 0.121 0.879 20 C -0.175 4.175 21 N -0.558 5.558 22 C 0.515 3.485 23 O -0.426 6.426 24 C -0.155 4.155 25 C -0.153 4.153 26 C 0.530 3.470 27 O -0.499 6.499 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.389 0.611 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 1.574 -15.375 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.377 4.377 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.563 5.563 10 Si 0.732 3.268 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.220 1.220 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.302 3.698 17 O -0.402 6.402 18 C 0.009 3.991 19 H 0.139 0.861 20 C -0.233 4.233 21 N -0.302 5.302 22 C 0.302 3.698 23 O -0.291 6.291 24 C -0.195 4.195 25 C -0.193 4.193 26 C 0.319 3.681 27 O -0.372 6.372 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.223 0.777 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.133 1.797 -14.780 16.510 hybrid contribution 0.665 -0.485 0.627 1.035 sum -6.468 1.313 -14.153 15.616 Atomic orbital electron populations 1.22065 0.95171 1.02055 1.02073 1.21408 0.93154 0.98515 0.84547 0.88283 1.20978 0.87382 0.96625 0.93391 1.42321 0.99518 1.70106 1.25290 1.19191 0.89417 1.29786 0.99258 0.91450 1.24764 0.96470 1.01611 0.97844 1.69740 1.06942 1.49992 1.29631 0.86221 0.80054 0.78764 0.81734 1.20731 1.22043 1.21986 1.47507 1.50429 1.12167 1.22358 1.21965 1.01663 0.82439 1.00893 1.20288 0.78153 0.87046 0.84306 1.90691 1.56437 1.16924 1.76119 1.21166 0.95667 0.90276 0.91985 0.86118 1.22383 1.02429 0.95605 1.02843 1.46520 1.26137 1.42751 1.14753 1.20738 0.79897 0.80335 0.88870 1.91007 1.61396 1.58148 1.18573 1.22435 1.00879 1.02755 0.93398 1.22423 0.96101 1.01013 0.99758 1.20812 0.85864 0.80678 0.80742 1.90737 1.29432 1.55456 1.61578 0.91331 0.92696 0.92284 0.95616 0.96287 0.77655 0.93701 0.90998 0.90960 0.91664 0.89055 0.91726 0.88816 0.86452 0.86393 0.86420 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.17 37.16 0.34 -1.70 16 2 C 0.13 2.24 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.15 3.00 5.56 -4.04 -0.02 2.98 16 5 N -0.73 -19.22 5.43 -59.91 -0.33 -19.55 16 6 C -0.25 -7.06 9.99 -15.06 -0.15 -7.21 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 9 N -0.92 -28.77 13.06 55.49 0.72 -28.05 16 10 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 N -0.59 -10.07 2.24 -173.93 -0.39 -10.47 16 15 C 0.07 0.98 7.96 59.85 0.48 1.46 16 16 C 0.52 9.72 6.41 -10.99 -0.07 9.65 16 17 O -0.53 -11.76 14.10 -11.10 -0.16 -11.92 16 18 C 0.11 1.80 2.31 -69.08 -0.16 1.64 16 19 H 0.12 1.64 6.67 -51.93 -0.35 1.30 16 20 C -0.18 -2.72 8.81 37.16 0.33 -2.39 16 21 N -0.56 -8.35 2.28 -109.48 -0.25 -8.60 16 22 C 0.51 8.25 6.70 -11.09 -0.07 8.18 16 23 O -0.43 -9.27 15.11 -11.05 -0.17 -9.43 16 24 C -0.15 -1.49 7.03 -26.94 -0.19 -1.68 16 25 C -0.15 -1.22 7.03 -26.93 -0.19 -1.41 16 26 C 0.53 6.78 8.08 -11.08 -0.09 6.69 16 27 O -0.50 -7.51 17.23 5.61 0.10 -7.41 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 6.66 -51.93 -0.35 0.34 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 33 H 0.39 11.27 7.06 -40.82 -0.29 10.98 16 34 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 1.09 6.95 -51.93 -0.36 0.73 16 36 H 0.07 0.82 6.43 -51.93 -0.33 0.48 16 37 H 0.06 0.70 6.01 -51.93 -0.31 0.38 16 38 H 0.09 1.32 4.53 -51.93 -0.24 1.09 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.90 6.66 -51.93 -0.35 1.55 16 41 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -38.42 354.67 -6.50 -44.92 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.26 Total: 9.35 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: -0.09 Total: 17.87 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.24 Total: -66.66 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.23 Total: -28.76 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.42 -6.50 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.225 kcal (2) G-P(sol) polarization free energy of solvation -38.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds