Wall clock time and date at job start Tue Mar 31 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46993 * 2 1 4 4 C 1.50699 * 109.47114 * 239.99742 * 2 1 3 5 5 O 1.21283 * 119.99843 * 239.99756 * 4 2 1 6 6 N 1.34774 * 119.99876 * 60.00097 * 4 2 1 7 7 C 1.46497 * 120.00288 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99744 * 179.97438 * 6 4 2 9 9 H 1.09002 * 109.47092 * 359.97438 * 8 6 4 10 10 C 1.52997 * 109.47007 * 119.99814 * 8 6 4 11 11 C 1.53000 * 109.47023 * 239.99606 * 8 6 4 12 12 N 1.46507 * 109.46803 * 55.00453 * 11 8 6 13 13 C 1.36934 * 119.99498 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00844 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99803 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99884 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00444 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46851 * 90.00052 * 17 15 13 19 19 H 1.48492 * 109.47389 * 210.00329 * 17 15 13 20 20 H 1.48498 * 109.46929 * 330.00601 * 17 15 13 21 21 N 1.46497 * 109.46927 * 119.99279 * 2 1 3 22 22 C 1.33879 * 122.76055 * 59.71673 * 21 2 1 23 23 O 1.21233 * 125.39361 * 359.96980 * 22 21 2 24 24 C 1.51318 * 109.20729 * 179.83782 * 22 21 2 25 25 C 1.54231 * 103.55469 * 0.38442 * 24 22 21 26 26 C 1.33876 * 122.76672 * 239.99951 * 21 2 1 27 27 O 1.21233 * 125.39500 * 0.02562 * 26 21 2 28 28 H 1.09002 * 109.46946 * 60.00013 * 1 2 3 29 29 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46903 * 300.00549 * 1 2 3 31 31 H 1.08998 * 109.47466 * 270.00414 * 7 6 4 32 32 H 1.09002 * 109.47260 * 30.00454 * 7 6 4 33 33 H 1.09000 * 109.47562 * 149.99903 * 7 6 4 34 34 H 1.09002 * 109.47153 * 60.00089 * 10 8 6 35 35 H 1.08998 * 109.47533 * 179.97438 * 10 8 6 36 36 H 1.08996 * 109.47853 * 300.00060 * 10 8 6 37 37 H 1.09008 * 109.47142 * 174.99638 * 11 8 6 38 38 H 1.08990 * 109.47170 * 295.00136 * 11 8 6 39 39 H 0.96994 * 119.99737 * 359.97438 * 12 11 8 40 40 H 0.96998 * 119.99867 * 179.97438 * 16 15 13 41 41 H 1.08994 * 110.79690 * 241.77478 * 24 22 21 42 42 H 1.09004 * 110.54575 * 118.87109 * 24 22 21 43 43 H 1.08999 * 110.60359 * 241.26470 * 25 24 22 44 44 H 1.09001 * 110.73669 * 118.35459 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8641 0.9407 -2.5890 8 6 2.1956 -0.9404 -3.6506 9 1 2.8018 -1.7963 -3.3539 10 6 1.0059 -1.4217 -4.4836 11 6 3.0453 0.0217 -4.4833 12 7 4.1156 0.5746 -3.6495 13 6 5.0083 1.4652 -4.1832 14 1 4.9233 1.7605 -5.2186 15 6 6.0222 1.9895 -3.3931 16 7 6.1256 1.6300 -2.1311 17 14 7.2396 3.2051 -4.1208 18 1 6.7255 4.5870 -3.9431 19 1 8.5468 3.0705 -3.4293 20 1 7.4142 2.9243 -5.5685 21 7 2.0183 -0.6905 1.1962 22 6 1.7245 -1.9685 1.4657 23 8 1.0387 -2.6919 0.7756 24 6 2.3867 -2.3680 2.7663 25 6 3.1137 -1.0827 3.2115 26 6 2.7905 -0.0938 2.1128 27 8 3.1703 1.0567 2.0695 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.1837 0.6425 -2.6225 32 1 1.0273 1.5996 -1.7361 33 1 1.1218 1.4664 -3.5085 34 1 0.4001 -0.5655 -4.7804 35 1 1.3695 -1.9349 -5.3738 36 1 0.4005 -2.1070 -3.8905 37 1 3.4816 -0.5150 -5.3258 38 1 2.4182 0.8323 -4.8542 39 1 4.1918 0.3096 -2.7196 40 1 6.8343 1.9961 -1.5791 41 1 3.1002 -3.1761 2.6051 42 1 1.6381 -2.6600 3.5029 43 1 4.1889 -1.2514 3.2716 44 1 2.7273 -0.7325 4.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:25 Heat of formation + Delta-G solvation = -68.979835 kcal Electronic energy + Delta-G solvation = -27830.092089 eV Core-core repulsion = 23977.099446 eV Total energy + Delta-G solvation = -3852.992643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99688 -39.63690 -38.41297 -36.41109 -35.69210 -34.61773 -33.80374 -31.98018 -30.32174 -29.64328 -26.84801 -26.15939 -25.62972 -24.64231 -22.69062 -22.34982 -21.49929 -19.49164 -18.62675 -17.33898 -17.20590 -16.98799 -16.63963 -16.18437 -15.54371 -15.14729 -14.72221 -14.55245 -14.11313 -14.04583 -13.86950 -13.64850 -13.58552 -13.37482 -13.23038 -12.92602 -12.51253 -12.46678 -12.24830 -12.09512 -12.07550 -11.84830 -11.47864 -11.43110 -11.42655 -10.81983 -10.74874 -10.46532 -10.40371 -10.08744 -10.02481 -9.88016 -9.66772 -9.20519 -8.83817 -8.27400 -6.87180 -5.69658 -2.99665 1.64396 2.38118 2.79817 2.95638 3.33770 3.46009 3.50601 3.53196 4.05234 4.20253 4.37816 4.55553 4.63827 4.73359 4.90958 5.03667 5.13845 5.27596 5.30668 5.40095 5.42408 5.50247 5.51221 5.56191 5.58229 5.61451 5.64917 5.73421 5.88623 5.98787 6.07995 6.12899 6.21091 6.39727 6.51575 6.73270 6.89833 6.97715 7.42688 7.66483 7.73022 7.86667 8.46996 8.48221 9.58545 10.16902 10.52036 11.52169 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.005245 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.621707 B = 5336.863243 C = 6732.488569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H 0.131 0.869 4 C 0.518 3.482 5 O -0.525 6.525 6 N -0.591 5.591 7 C 0.076 3.924 8 C 0.127 3.873 9 H 0.099 0.901 10 C -0.154 4.154 11 C 0.144 3.856 12 N -0.728 5.728 13 C -0.243 4.243 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.927 5.927 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.283 1.283 21 N -0.556 5.556 22 C 0.534 3.466 23 O -0.472 6.472 24 C -0.155 4.155 25 C -0.154 4.154 26 C 0.526 3.474 27 O -0.474 6.474 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -5.911 9.214 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 H 0.149 0.851 4 C 0.304 3.696 5 O -0.400 6.400 6 N -0.324 5.324 7 C -0.067 4.067 8 C 0.024 3.976 9 H 0.117 0.883 10 C -0.212 4.212 11 C 0.015 3.985 12 N -0.372 5.372 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 N -0.300 5.300 22 C 0.323 3.677 23 O -0.343 6.343 24 C -0.195 4.195 25 C -0.193 4.193 26 C 0.314 3.686 27 O -0.345 6.345 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.461 -6.095 8.733 17.959 hybrid contribution 0.887 0.837 -0.208 1.237 sum -13.574 -5.258 8.525 16.869 Atomic orbital electron populations 1.22369 0.91689 1.04686 1.04236 1.21189 0.96493 0.98510 0.83330 0.85136 1.20226 0.80346 0.84617 0.84409 1.90696 1.37235 1.26204 1.85881 1.47498 1.50971 1.28760 1.05202 1.21917 0.93284 0.87371 1.04119 1.21402 0.95096 0.96562 0.84517 0.88262 1.22041 0.98060 1.01189 0.99924 1.21010 0.90134 0.94032 0.93325 1.42295 1.31333 1.52368 1.11236 1.19190 1.05828 1.17167 0.95227 0.91287 1.24763 0.99397 1.00800 0.95890 1.69689 1.34807 1.47200 1.05797 0.86210 0.80928 0.81158 0.77981 1.21782 1.21816 1.20826 1.46435 1.47247 1.14394 1.21889 1.20634 0.79401 0.80391 0.87297 1.90728 1.36123 1.54326 1.53123 1.22434 1.01865 0.99539 0.95618 1.22440 1.04741 0.93391 0.98760 1.20836 0.76153 0.88150 0.83433 1.90828 1.50249 1.16950 1.76425 0.89091 0.90412 0.91253 0.92724 0.91209 0.90046 0.92387 0.91411 0.92579 0.95389 0.96134 0.78080 0.93543 0.86168 0.86521 0.86029 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.80 37.16 0.33 -1.70 16 2 C 0.11 1.74 2.31 -69.08 -0.16 1.58 16 3 H 0.13 2.16 6.67 -51.93 -0.35 1.82 16 4 C 0.52 9.87 6.42 -10.99 -0.07 9.80 16 5 O -0.52 -11.89 14.16 -10.30 -0.15 -12.03 16 6 N -0.59 -10.16 2.24 -173.94 -0.39 -10.55 16 7 C 0.08 1.02 7.86 59.85 0.47 1.49 16 8 C 0.13 2.27 2.80 -67.93 -0.19 2.08 16 9 H 0.10 2.05 6.90 -51.93 -0.36 1.69 16 10 C -0.15 -2.06 9.19 37.16 0.34 -1.71 16 11 C 0.14 2.96 5.50 -4.04 -0.02 2.93 16 12 N -0.73 -19.23 5.43 -59.90 -0.33 -19.56 16 13 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 17 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 N -0.56 -8.38 2.28 -109.48 -0.25 -8.63 16 22 C 0.53 7.52 6.70 -11.08 -0.07 7.44 16 23 O -0.47 -8.04 15.13 -10.26 -0.16 -8.20 16 24 C -0.15 -1.33 7.03 -26.94 -0.19 -1.52 16 25 C -0.15 -1.35 7.03 -26.94 -0.19 -1.53 16 26 C 0.53 7.63 8.08 -11.09 -0.09 7.54 16 27 O -0.47 -8.72 17.23 5.60 0.10 -8.63 16 28 H 0.09 0.91 4.53 -51.93 -0.24 0.67 16 29 H 0.08 1.01 6.62 -51.93 -0.34 0.67 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.56 6.95 -51.93 -0.36 0.20 16 32 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 33 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 34 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 39 H 0.39 11.13 7.06 -40.82 -0.29 10.85 16 40 H 0.25 7.83 8.31 -40.82 -0.34 7.50 16 41 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -38.81 354.72 -6.48 -45.30 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.27 Total: 8.71 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -0.09 Total: 18.80 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.24 Total: -67.34 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.20 Total: -28.86 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.81 -6.48 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.682 kcal (2) G-P(sol) polarization free energy of solvation -38.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds