Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47450 * 2 1 4 4 C 1.53006 * 109.47114 * 239.99838 * 2 1 3 5 5 N 1.46495 * 109.46904 * 184.99853 * 4 2 1 6 6 C 1.36943 * 119.99779 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00029 * 180.02562 * 6 5 4 9 9 N 1.31626 * 120.00195 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00170 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47261 * 89.99905 * 10 8 6 12 12 H 1.48503 * 109.47157 * 210.00110 * 10 8 6 13 13 H 1.48502 * 109.46771 * 329.99607 * 10 8 6 14 14 N 1.46505 * 109.47245 * 120.00320 * 2 1 3 15 15 C 1.46501 * 119.99969 * 65.84601 * 14 2 1 16 16 C 1.34777 * 119.99774 * 245.85099 * 14 2 1 17 17 O 1.21282 * 119.99995 * 185.42187 * 16 14 2 18 18 C 1.50702 * 120.00029 * 5.42118 * 16 14 2 19 19 H 1.08997 * 109.46982 * 45.36472 * 18 16 14 20 20 C 1.52996 * 109.47038 * 285.36363 * 18 16 14 21 21 N 1.46498 * 109.46893 * 165.36348 * 18 16 14 22 22 C 1.33883 * 122.76205 * 59.70884 * 21 18 16 23 23 O 1.21227 * 125.39399 * 359.97438 * 22 21 18 24 24 C 1.51317 * 109.20477 * 179.83946 * 22 21 18 25 25 C 1.54223 * 103.55623 * 0.38723 * 24 22 21 26 26 C 1.33876 * 122.76326 * 240.00066 * 21 18 16 27 27 O 1.21226 * 125.39374 * 0.02562 * 26 21 18 28 28 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46754 * 299.99937 * 1 2 3 30 30 H 1.08998 * 109.47145 * 60.00297 * 1 2 3 31 31 H 1.08995 * 109.47065 * 305.00379 * 4 2 1 32 32 H 1.09004 * 109.46395 * 65.00440 * 4 2 1 33 33 H 0.96994 * 120.00394 * 0.02562 * 5 4 2 34 34 H 0.96996 * 120.00277 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47167 * 85.88958 * 15 14 2 36 36 H 1.08999 * 109.47212 * 325.88862 * 15 14 2 37 37 H 1.08998 * 109.46736 * 205.88527 * 15 14 2 38 38 H 1.09005 * 109.47194 * 306.61788 * 20 18 16 39 39 H 1.09000 * 109.47116 * 66.61453 * 20 18 16 40 40 H 1.09002 * 109.46968 * 186.61714 * 20 18 16 41 41 H 1.09007 * 110.79394 * 241.77874 * 24 22 21 42 42 H 1.08999 * 110.54344 * 118.88036 * 24 22 21 43 43 H 1.08998 * 110.60693 * 241.25765 * 25 24 22 44 44 H 1.09007 * 110.74024 * 118.35291 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1839 -1.4380 -2.2072 7 1 3.6469 -1.8424 -3.0525 8 6 5.5672 -1.5380 -2.1514 9 7 6.2217 -1.0455 -1.1210 10 14 6.5002 -2.3716 -3.5386 11 1 6.8629 -1.3637 -4.5669 12 1 7.7353 -2.9955 -2.9996 13 1 5.6439 -3.4185 -4.1518 14 7 2.0184 -0.6907 1.1962 15 6 1.7731 -2.1251 1.3652 16 6 2.6932 -0.0064 2.1411 17 8 3.1825 -0.5943 3.0823 18 6 2.8399 1.4892 2.0280 19 1 1.8787 1.9295 1.7629 20 6 3.8687 1.8203 0.9451 21 7 3.2892 2.0341 3.3115 22 6 4.4397 1.6689 3.8908 23 8 5.2288 0.8664 3.4403 24 6 4.6003 2.4190 5.1951 25 6 3.3251 3.2827 5.2748 26 6 2.5806 2.9341 4.0044 27 8 1.5116 3.3961 3.6677 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.9823 -0.4628 -0.4316 34 1 7.1883 -1.1151 -1.0822 35 1 2.5586 -2.6897 0.8629 36 1 0.8067 -2.3821 0.9314 37 1 1.7716 -2.3707 2.4272 38 1 4.7958 1.2844 1.1487 39 1 3.4813 1.5192 -0.0283 40 1 4.0619 2.8931 0.9433 41 1 5.4896 3.0491 5.1722 42 1 4.6458 1.7236 6.0332 43 1 3.5799 4.3424 5.2916 44 1 2.7335 3.0176 6.1511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -69.274193 kcal Electronic energy + Delta-G solvation = -28028.827400 eV Core-core repulsion = 24175.821992 eV Total energy + Delta-G solvation = -3853.005408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01145 -39.66285 -38.41576 -36.66861 -35.71939 -34.25639 -33.87201 -31.51329 -30.50653 -30.03334 -26.85913 -26.17761 -25.73315 -24.18881 -22.75103 -22.36692 -21.28129 -20.10379 -18.52387 -17.39566 -17.27817 -16.88050 -16.72932 -15.98786 -15.42583 -15.07684 -14.69948 -14.50333 -14.16765 -14.12829 -13.86193 -13.72232 -13.61125 -13.36633 -13.03432 -12.94389 -12.59723 -12.41925 -12.14517 -11.98100 -11.85642 -11.72945 -11.60722 -11.44852 -11.32320 -10.87197 -10.77290 -10.60817 -10.44953 -10.14636 -9.98368 -9.79999 -9.69947 -9.18865 -8.88564 -8.27917 -6.92674 -5.72910 -3.03950 1.60823 2.38800 2.79773 2.88724 3.38367 3.44617 3.49493 3.51970 4.00451 4.17395 4.35229 4.53320 4.60627 4.71561 4.94572 5.01863 5.11729 5.26373 5.27441 5.31841 5.42782 5.43505 5.48998 5.59255 5.65945 5.81322 5.85608 5.90434 5.94327 6.08019 6.12126 6.29969 6.36936 6.45347 6.55762 6.63609 6.86416 6.93149 7.37682 7.66272 7.70980 7.92264 8.43063 8.45507 9.55342 10.10907 10.45804 11.48439 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.004850 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.078273 B = 5771.818832 C = 6733.311147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 H 0.094 0.906 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.247 4.247 7 H 0.070 0.930 8 C -0.009 4.009 9 N -0.924 5.924 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.591 5.591 15 C 0.092 3.908 16 C 0.513 3.487 17 O -0.524 6.524 18 C 0.111 3.889 19 H 0.120 0.880 20 C -0.169 4.169 21 N -0.559 5.559 22 C 0.521 3.479 23 O -0.438 6.438 24 C -0.155 4.155 25 C -0.153 4.153 26 C 0.528 3.472 27 O -0.494 6.494 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.387 0.613 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 9.551 11.690 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.111 0.889 4 C 0.013 3.987 5 N -0.376 5.376 6 C -0.378 4.378 7 H 0.088 0.912 8 C -0.206 4.206 9 N -0.572 5.572 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.324 5.324 15 C -0.050 4.050 16 C 0.298 3.702 17 O -0.400 6.400 18 C 0.006 3.994 19 H 0.138 0.862 20 C -0.227 4.227 21 N -0.303 5.303 22 C 0.308 3.692 23 O -0.304 6.304 24 C -0.195 4.195 25 C -0.193 4.193 26 C 0.317 3.683 27 O -0.367 6.367 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.594 8.896 11.594 17.481 hybrid contribution 0.661 -0.446 -0.721 1.075 sum -8.933 8.450 10.873 16.414 Atomic orbital electron populations 1.22123 0.94837 1.02685 1.02257 1.21780 0.94159 0.97545 0.85814 0.88865 1.21014 0.87318 0.97242 0.93078 1.42376 0.99480 1.70500 1.25216 1.19158 0.89359 1.30239 0.99024 0.91246 1.24754 0.96489 1.01459 0.97866 1.69672 1.07302 1.50412 1.29792 0.86229 0.79608 0.79039 0.81486 1.21754 1.21812 1.20837 1.47572 1.55215 1.09716 1.19929 1.21547 1.01145 0.80245 1.02111 1.20313 0.78188 0.88926 0.82732 1.90700 1.45904 1.70095 1.33320 1.21277 1.01578 0.92709 0.83848 0.86187 1.22320 1.00305 1.02662 0.97368 1.46572 1.22425 1.39926 1.21416 1.20672 0.80275 0.81680 0.86574 1.90881 1.43586 1.29187 1.66768 1.22446 0.99719 1.00093 0.97245 1.22432 0.96579 1.03237 0.97067 1.20833 0.84364 0.77265 0.85839 1.90750 1.19863 1.53418 1.72681 0.91948 0.92459 0.91069 0.95733 0.95040 0.77813 0.93424 0.91478 0.91745 0.91303 0.88883 0.88713 0.91444 0.86359 0.86405 0.86295 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.26 37.16 0.34 -1.56 16 2 C 0.11 1.72 2.10 -67.92 -0.14 1.58 16 3 H 0.09 1.41 4.04 -51.93 -0.21 1.20 16 4 C 0.14 2.70 5.45 -4.04 -0.02 2.68 16 5 N -0.73 -18.03 5.23 -59.91 -0.31 -18.34 16 6 C -0.25 -6.83 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 9 N -0.92 -28.37 13.06 55.49 0.72 -27.65 16 10 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.59 -10.36 2.20 -173.93 -0.38 -10.75 16 15 C 0.09 1.54 9.41 59.85 0.56 2.11 16 16 C 0.51 9.79 6.79 -10.98 -0.07 9.72 16 17 O -0.52 -11.60 13.69 -15.73 -0.22 -11.81 16 18 C 0.11 1.82 2.25 -69.08 -0.16 1.66 16 19 H 0.12 1.75 6.62 -51.93 -0.34 1.40 16 20 C -0.17 -2.93 8.10 37.16 0.30 -2.63 16 21 N -0.56 -8.24 2.38 -109.48 -0.26 -8.50 16 22 C 0.52 7.91 6.72 -11.08 -0.07 7.83 16 23 O -0.44 -8.92 14.74 -15.69 -0.23 -9.15 16 24 C -0.16 -1.33 7.03 -26.94 -0.19 -1.52 16 25 C -0.15 -1.12 7.03 -26.94 -0.19 -1.31 16 26 C 0.53 6.55 8.08 -11.08 -0.09 6.46 16 27 O -0.49 -7.33 17.23 5.60 0.10 -7.23 16 28 H 0.06 0.71 6.90 -51.93 -0.36 0.35 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.39 10.15 5.78 -40.82 -0.24 9.91 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.88 6.75 -51.93 -0.35 0.53 16 37 H 0.07 1.15 7.38 -51.93 -0.38 0.77 16 38 H 0.09 2.00 6.88 -51.93 -0.36 1.64 16 39 H 0.09 1.72 4.78 -51.93 -0.25 1.47 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.12 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -37.18 353.38 -6.50 -43.67 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.24 Total: 9.17 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 0.02 Total: 17.70 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.23 Total: -65.24 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.35 Total: -28.20 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.18 -6.50 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.600 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds