Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46905 * 109.47028 * 184.99640 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46808 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99498 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00449 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46972 * 89.99654 * 14 12 10 16 16 H 1.48497 * 109.47301 * 210.00036 * 14 12 10 17 17 H 1.48507 * 109.46686 * 329.99970 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.34781 * 119.99732 * 274.99921 * 18 2 1 20 20 O 1.21283 * 119.99585 * 359.97438 * 19 18 2 21 21 C 1.50697 * 119.99747 * 179.97438 * 19 18 2 22 22 H 1.08992 * 115.51275 * 34.63124 * 21 19 18 23 23 C 1.53002 * 117.43096 * 179.97438 * 21 19 18 24 24 H 1.09006 * 119.80734 * 354.34977 * 23 21 19 25 25 C 1.54478 * 118.06934 * 198.08596 * 23 21 19 26 26 O 1.44426 * 104.79817 * 321.13117 * 25 23 21 27 27 C 1.44421 * 105.27812 * 319.48366 * 26 25 23 28 28 C 1.53002 * 117.43286 * 249.34067 * 21 19 18 29 29 H 1.08995 * 119.80419 * 4.64462 * 28 21 19 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 34 34 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 35 35 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 36 36 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 37 37 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 38 38 H 0.96999 * 120.00267 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00290 * 180.02562 * 13 12 10 40 40 H 0.96998 * 120.00364 * 94.99433 * 18 2 1 41 41 H 1.08999 * 110.37501 * 79.96002 * 25 23 21 42 42 H 1.09001 * 110.37484 * 202.29885 * 25 23 21 43 43 H 1.08997 * 110.37444 * 159.34258 * 27 26 25 44 44 H 1.08997 * 110.37545 * 281.57489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6054 -2.2803 8 8 6.1065 -1.1412 -1.3186 9 7 6.2352 -2.2014 -3.2633 10 6 7.6009 -2.2833 -3.1757 11 1 8.1129 -1.8699 -2.3193 12 6 8.3264 -2.8981 -4.1888 13 7 7.7034 -3.4016 -5.2306 14 14 10.1873 -3.0091 -4.0699 15 1 10.5649 -4.2665 -3.3758 16 1 10.7718 -3.0025 -5.4350 17 1 10.7046 -1.8465 -3.3043 18 7 2.0184 -0.6907 1.1961 19 6 2.1472 -0.0183 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6490 -0.7289 3.5877 22 1 3.3967 -1.5020 3.4112 23 6 2.7730 0.0908 4.8736 24 1 2.5908 1.1653 4.8510 25 6 3.6610 -0.4666 6.0081 26 8 3.4146 -1.8897 6.0041 27 6 1.9939 -2.0293 5.7856 28 6 1.6508 -0.9613 4.7237 29 1 0.6050 -0.6844 4.5911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7198 -1.2952 34 1 1.7516 -0.1584 -2.1370 35 1 3.7996 -1.2884 -0.3434 36 1 3.6093 -2.5200 -2.4295 37 1 3.7557 -0.9588 -3.2721 38 1 5.7754 -2.5730 -4.0322 39 1 8.2098 -3.8312 -5.9376 40 1 2.2491 -1.6318 1.1526 41 1 4.7118 -0.2629 5.8024 42 1 3.3700 -0.0338 6.9652 43 1 1.7640 -3.0260 5.4089 44 1 1.4473 -1.8381 6.7091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754238988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = -83.912754 kcal Electronic energy + Delta-G solvation = -25345.949468 eV Core-core repulsion = 21492.309285 eV Total energy + Delta-G solvation = -3853.640183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04073 -39.44196 -38.30559 -36.77863 -34.61407 -34.27293 -33.65029 -31.31643 -31.11405 -29.06718 -27.63111 -26.76428 -25.04794 -23.41668 -22.79146 -21.05408 -20.78312 -20.18475 -19.25544 -18.10864 -17.85201 -16.48148 -16.42837 -16.16966 -15.70699 -15.48268 -15.37885 -14.89960 -14.57152 -14.40296 -14.25054 -13.90821 -13.54016 -13.33110 -13.10853 -12.93483 -12.68964 -12.51819 -12.08609 -11.97948 -11.93626 -11.76140 -11.62728 -11.48641 -11.09134 -11.00510 -10.65959 -10.52567 -10.39781 -10.22763 -10.12553 -9.84371 -9.52085 -9.22416 -8.49258 -8.11379 -7.97426 -6.42866 -3.83716 2.26110 2.84715 3.17401 3.26229 3.29427 3.32508 3.61388 3.88806 4.02747 4.23561 4.26287 4.30035 4.45939 4.51772 4.75733 4.92342 4.97916 5.01844 5.06110 5.14706 5.18615 5.24894 5.25762 5.32834 5.39260 5.43138 5.51599 5.53334 5.59168 5.73510 5.75362 5.88901 5.94164 6.03088 6.23892 6.36735 6.37877 7.12072 7.34735 7.54364 7.56942 8.05044 8.10082 8.59899 9.16810 9.52767 10.04176 10.74864 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.002697 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.491045 B =10380.564024 C =11914.203028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.716 5.716 19 C 0.552 3.448 20 O -0.539 6.539 21 C -0.146 4.146 22 H 0.129 0.871 23 C -0.163 4.163 24 H 0.137 0.863 25 C 0.070 3.930 26 O -0.372 6.372 27 C 0.072 3.928 28 C -0.176 4.176 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.348 0.652 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.399 0.601 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 1.620 15.571 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.367 5.367 19 C 0.338 3.662 20 O -0.416 6.416 21 C -0.167 4.167 22 H 0.147 0.853 23 C -0.182 4.182 24 H 0.155 0.845 25 C -0.007 4.007 26 O -0.291 6.291 27 C -0.005 4.005 28 C -0.194 4.194 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.234 0.766 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.538 3.148 15.844 23.119 hybrid contribution 0.316 -1.565 -0.609 1.709 sum -16.222 1.583 15.236 22.312 Atomic orbital electron populations 1.22145 0.95004 1.02083 1.02729 1.21066 0.93417 0.98530 0.83042 0.88376 1.22306 0.88901 0.98992 0.97772 1.60026 1.07435 1.57550 1.05011 1.21695 0.95195 0.96941 0.94446 1.19796 0.88056 0.84327 0.85334 1.90532 1.71091 1.51485 1.33503 1.41863 1.07429 1.50845 1.19861 1.19707 0.81519 1.35082 1.06573 0.87915 1.25264 1.00723 0.96765 0.95178 1.69610 1.36742 1.38582 1.09432 0.85856 0.82131 0.78877 0.77431 1.20405 1.20909 1.19364 1.45909 1.67252 1.13939 1.09602 1.19358 0.76815 0.86484 0.83520 1.90692 1.50088 1.15732 1.85039 1.22106 1.02855 1.03107 0.88630 0.85347 1.24009 0.99846 0.99006 0.95334 0.84542 1.23023 1.00653 0.80935 0.96079 1.89201 1.23248 1.23024 1.93583 1.22953 0.82475 0.99072 0.95958 1.24017 0.96792 1.00126 0.98502 0.85447 0.92000 0.91310 0.92506 0.94944 0.89403 0.83243 0.93838 0.89442 0.77466 0.91862 0.76645 0.88141 0.90761 0.88441 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.60 2.88 -67.93 -0.20 1.41 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 4 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 5 N -0.67 -10.48 6.12 -115.06 -0.70 -11.18 16 6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 8 O -0.58 -15.88 15.78 5.55 0.09 -15.80 16 9 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 14 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 N -0.72 -7.78 4.36 -53.80 -0.23 -8.01 16 19 C 0.55 6.92 7.57 -10.98 -0.08 6.84 16 20 O -0.54 -8.54 16.01 5.56 0.09 -8.45 16 21 C -0.15 -1.52 5.56 -91.77 -0.51 -2.03 16 22 H 0.13 1.33 8.06 -51.93 -0.42 0.91 16 23 C -0.16 -1.57 6.69 -89.03 -0.60 -2.16 16 24 H 0.14 1.39 7.82 -51.93 -0.41 0.99 16 25 C 0.07 0.59 7.53 37.93 0.29 0.88 16 26 O -0.37 -3.76 11.31 -35.23 -0.40 -4.16 16 27 C 0.07 0.54 7.53 37.93 0.29 0.82 16 28 C -0.18 -1.46 6.95 -89.04 -0.62 -2.08 16 29 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.35 5.61 7.28 -39.29 -0.29 5.32 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.40 3.62 8.15 -40.82 -0.33 3.29 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -34.07 371.40 -8.12 -42.19 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -6.74 Total: 15.63 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.46 Total: 6.21 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.27 Total: -57.27 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.22 Total: -28.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.07 -8.12 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754238988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.724 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds