Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46905 * 109.47028 * 184.99640 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46808 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99498 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00449 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46972 * 89.99654 * 14 12 10 16 16 H 1.48497 * 109.47301 * 210.00036 * 14 12 10 17 17 H 1.48507 * 109.46686 * 329.99970 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.34781 * 119.99732 * 274.99921 * 18 2 1 20 20 O 1.21283 * 119.99585 * 359.97438 * 19 18 2 21 21 C 1.50697 * 119.99747 * 179.97438 * 19 18 2 22 22 H 1.08992 * 115.51275 * 34.63124 * 21 19 18 23 23 C 1.53002 * 117.43096 * 179.97438 * 21 19 18 24 24 H 1.09006 * 119.80734 * 354.34977 * 23 21 19 25 25 C 1.54478 * 118.06934 * 198.08596 * 23 21 19 26 26 O 1.44426 * 104.79817 * 321.13117 * 25 23 21 27 27 C 1.44421 * 105.27812 * 319.48366 * 26 25 23 28 28 C 1.53002 * 117.43286 * 249.34067 * 21 19 18 29 29 H 1.08995 * 119.80419 * 4.64462 * 28 21 19 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 34 34 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 35 35 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 36 36 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 37 37 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 38 38 H 0.96999 * 120.00267 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00290 * 180.02562 * 13 12 10 40 40 H 0.96998 * 120.00364 * 94.99433 * 18 2 1 41 41 H 1.08999 * 110.37501 * 79.96002 * 25 23 21 42 42 H 1.09001 * 110.37484 * 202.29885 * 25 23 21 43 43 H 1.08997 * 110.37444 * 159.34258 * 27 26 25 44 44 H 1.08997 * 110.37545 * 281.57489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6054 -2.2803 8 8 6.1065 -1.1412 -1.3186 9 7 6.2352 -2.2014 -3.2633 10 6 7.6009 -2.2833 -3.1757 11 1 8.1129 -1.8699 -2.3193 12 6 8.3264 -2.8981 -4.1888 13 7 7.7034 -3.4016 -5.2306 14 14 10.1873 -3.0091 -4.0699 15 1 10.5649 -4.2665 -3.3758 16 1 10.7718 -3.0025 -5.4350 17 1 10.7046 -1.8465 -3.3043 18 7 2.0184 -0.6907 1.1961 19 6 2.1472 -0.0183 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6490 -0.7289 3.5877 22 1 3.3967 -1.5020 3.4112 23 6 2.7730 0.0908 4.8736 24 1 2.5908 1.1653 4.8510 25 6 3.6610 -0.4666 6.0081 26 8 3.4146 -1.8897 6.0041 27 6 1.9939 -2.0293 5.7856 28 6 1.6508 -0.9613 4.7237 29 1 0.6050 -0.6844 4.5911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7198 -1.2952 34 1 1.7516 -0.1584 -2.1370 35 1 3.7996 -1.2884 -0.3434 36 1 3.6093 -2.5200 -2.4295 37 1 3.7557 -0.9588 -3.2721 38 1 5.7754 -2.5730 -4.0322 39 1 8.2098 -3.8312 -5.9376 40 1 2.2491 -1.6318 1.1526 41 1 4.7118 -0.2629 5.8024 42 1 3.3700 -0.0338 6.9652 43 1 1.7640 -3.0260 5.4089 44 1 1.4473 -1.8381 6.7091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754238988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -111.181062 kcal Electronic energy + Delta-G solvation = -25347.131910 eV Core-core repulsion = 21492.309285 eV Total energy + Delta-G solvation = -3854.822626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82949 -40.40943 -40.04474 -37.90041 -36.05024 -35.37981 -35.09698 -33.26923 -32.13326 -29.69375 -28.99433 -27.53040 -26.70140 -24.72377 -23.66605 -21.79007 -21.65340 -21.20481 -20.91803 -19.91861 -18.93677 -17.86645 -17.41439 -17.02416 -16.88376 -16.51960 -16.38455 -16.22998 -16.04914 -15.66906 -15.39417 -15.19688 -15.05466 -14.35958 -14.20586 -14.06117 -13.56923 -13.53648 -13.36447 -13.11510 -13.04722 -12.81438 -12.78377 -12.72813 -12.56004 -12.42625 -12.13232 -11.97241 -11.51685 -11.41166 -11.25611 -11.01227 -10.60144 -10.38522 -10.14121 -10.02341 -9.34390 -8.47709 -5.96345 1.34802 1.37303 1.41403 1.54022 2.00033 2.04546 2.28470 2.51230 2.86096 2.96033 3.19750 3.47863 3.53397 3.56936 3.71105 3.83896 3.84642 4.11117 4.18164 4.25071 4.30460 4.36798 4.48723 4.49188 4.58125 4.66094 4.67196 4.73634 4.75602 4.77411 4.80579 4.85465 4.97178 5.05683 5.25509 5.40161 5.48499 5.73591 5.85492 6.07683 6.34597 6.45599 6.59454 7.12009 7.16815 7.55522 8.11218 8.69632 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.002697 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.491045 B =10380.564024 C =11914.203028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.065 0.935 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.275 1.275 18 N -0.708 5.708 19 C 0.548 3.452 20 O -0.579 6.579 21 C -0.160 4.160 22 H 0.127 0.873 23 C -0.175 4.175 24 H 0.126 0.874 25 C 0.072 3.928 26 O -0.395 6.395 27 C 0.071 3.929 28 C -0.153 4.153 29 H 0.137 0.863 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.342 0.658 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.409 0.591 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 0.373 15.516 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.195 1.195 16 H -0.195 1.195 17 H -0.200 1.200 18 N -0.359 5.359 19 C 0.336 3.664 20 O -0.459 6.459 21 C -0.181 4.181 22 H 0.145 0.855 23 C -0.193 4.193 24 H 0.144 0.856 25 C -0.005 4.005 26 O -0.314 6.314 27 C -0.005 4.005 28 C -0.171 4.171 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.162 0.838 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.861 1.866 15.757 23.891 hybrid contribution 0.674 -1.154 -0.583 1.458 sum -17.187 0.711 15.175 22.938 Atomic orbital electron populations 1.22053 0.92877 1.03256 1.02746 1.21029 0.94938 0.96833 0.83142 0.91641 1.22370 0.86143 1.00638 0.98123 1.59999 1.10326 1.57628 1.04203 1.21555 0.90139 0.99198 0.95806 1.20955 0.90778 0.82178 0.83814 1.90502 1.72881 1.52807 1.35018 1.41925 1.06832 1.51568 1.20622 1.19646 0.83153 1.36895 1.06705 0.90516 1.26015 1.04836 0.95804 0.94491 1.69663 1.38288 1.38413 1.09683 0.84953 0.76919 0.78738 0.77888 1.19490 1.19484 1.19967 1.45894 1.66498 1.14353 1.09176 1.19729 0.76203 0.86086 0.84416 1.90666 1.52115 1.17417 1.85728 1.22053 1.04167 1.03508 0.88403 0.85528 1.24041 1.01369 0.98746 0.95188 0.85595 1.23095 1.00355 0.80486 0.96520 1.89175 1.24869 1.23667 1.93713 1.23171 0.81461 0.99368 0.96485 1.24101 0.96631 0.99599 0.96792 0.84537 0.93452 0.89860 0.90657 0.92145 0.88187 0.83850 0.90858 0.87543 0.76875 0.91255 0.75470 0.88487 0.88643 0.87134 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.15 3.11 2.88 44.99 0.13 3.23 16 3 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 4 C 0.06 1.14 5.30 86.30 0.46 1.60 16 5 N -0.69 -20.78 6.12 -517.94 -3.17 -23.95 16 6 C 0.07 2.12 6.17 85.56 0.53 2.65 16 7 C 0.44 20.55 7.82 87.66 0.69 21.23 16 8 O -0.63 -34.99 15.78 -3.05 -0.05 -35.03 16 9 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 10 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 14 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 N -0.71 -15.07 4.36 -442.52 -1.93 -17.00 16 19 C 0.55 14.00 7.57 87.66 0.66 14.67 16 20 O -0.58 -19.08 16.01 -3.04 -0.05 -19.13 16 21 C -0.16 -3.34 5.56 -11.54 -0.06 -3.41 16 22 H 0.13 2.65 8.06 -2.39 -0.02 2.63 16 23 C -0.17 -3.35 6.69 -9.76 -0.07 -3.41 16 24 H 0.13 2.68 7.82 -2.38 -0.02 2.66 16 25 C 0.07 1.18 7.53 72.48 0.55 1.72 16 26 O -0.40 -7.54 11.31 -148.98 -1.69 -9.23 16 27 C 0.07 0.92 7.53 72.48 0.55 1.46 16 28 C -0.15 -2.36 6.95 -9.77 -0.07 -2.43 16 29 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.34 10.86 7.28 -89.69 -0.65 10.21 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 38 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 39 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.41 7.02 8.15 -92.71 -0.76 6.26 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.38 371.40 -1.97 -77.35 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -1.10 Total: 44.64 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.32 Total: 17.18 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.44 Total: -120.82 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -1.78 Total: -63.39 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.38 -1.97 -77.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754238988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.836 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds