Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.47175 * 2 1 4 4 C 1.52999 * 109.46968 * 240.00305 * 2 1 3 5 5 N 1.46499 * 109.47109 * 185.00041 * 4 2 1 6 6 C 1.46504 * 120.00303 * 269.99727 * 5 4 2 7 7 C 1.36940 * 120.00466 * 89.99426 * 5 4 2 8 8 H 1.07999 * 119.99274 * 342.46870 * 7 5 4 9 9 C 1.38803 * 120.00309 * 162.74116 * 7 5 4 10 10 N 1.31621 * 120.00071 * 345.87516 * 9 7 5 11 11 Si 1.86799 * 120.00161 * 165.87691 * 9 7 5 12 12 H 1.48507 * 109.47144 * 89.99735 * 11 9 7 13 13 H 1.48498 * 109.47344 * 210.00106 * 11 9 7 14 14 H 1.48506 * 109.47209 * 330.00386 * 11 9 7 15 15 N 1.46497 * 109.47133 * 119.99869 * 2 1 3 16 16 C 1.34774 * 120.00017 * 274.99867 * 15 2 1 17 17 O 1.21284 * 120.00308 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99709 * 180.02562 * 16 15 2 19 19 H 1.08996 * 109.47065 * 299.99484 * 18 16 15 20 20 C 1.52990 * 109.47509 * 60.00111 * 18 16 15 21 21 N 1.46506 * 109.46752 * 180.02562 * 18 16 15 22 22 C 1.33882 * 122.75967 * 299.70182 * 21 18 16 23 23 O 1.21224 * 125.39710 * 359.97438 * 22 21 18 24 24 C 1.51311 * 109.20352 * 179.84607 * 22 21 18 25 25 C 1.54233 * 103.55627 * 0.39035 * 24 22 21 26 26 C 1.33874 * 122.76578 * 120.00397 * 21 18 16 27 27 O 1.21233 * 125.39405 * 0.02562 * 26 21 18 28 28 H 1.08997 * 109.46806 * 59.99585 * 1 2 3 29 29 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46913 * 300.00393 * 1 2 3 31 31 H 1.08993 * 109.47360 * 64.99894 * 4 2 1 32 32 H 1.09005 * 109.46955 * 304.99596 * 4 2 1 33 33 H 1.08994 * 109.47018 * 264.93862 * 6 5 4 34 34 H 1.09006 * 109.46817 * 24.93601 * 6 5 4 35 35 H 1.08996 * 109.47522 * 144.93113 * 6 5 4 36 36 H 0.96999 * 120.00039 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99872 * 95.00161 * 15 2 1 38 38 H 1.09007 * 109.47105 * 299.99805 * 20 18 16 39 39 H 1.09001 * 109.47154 * 59.99965 * 20 18 16 40 40 H 1.08996 * 109.47535 * 180.02562 * 20 18 16 41 41 H 1.08999 * 110.80067 * 241.77841 * 24 22 21 42 42 H 1.09007 * 110.54515 * 118.87776 * 24 22 21 43 43 H 1.09002 * 110.60190 * 241.25735 * 25 24 22 44 44 H 1.09001 * 110.73833 * 118.35908 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5089 -2.5474 0.0576 9 6 5.4199 -2.2051 -0.8498 10 7 6.0469 -1.6169 -1.8464 11 14 6.3263 -3.4291 0.2316 12 1 6.1826 -4.7934 -0.3371 13 1 7.7651 -3.0666 0.2910 14 1 5.7517 -3.4006 1.6007 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8582 1.1585 2.4117 18 6 2.6500 -0.7285 3.5874 19 1 1.9777 -1.5507 3.8325 20 6 4.0526 -1.2785 3.3213 21 7 2.6986 0.2127 4.7090 22 6 3.4501 1.3206 4.6930 23 8 4.1624 1.6727 3.7775 24 6 3.2668 2.0653 5.9974 25 6 2.2764 1.1811 6.7823 26 6 1.9998 0.0328 5.8367 27 8 1.2627 -0.9023 6.0643 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7516 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2952 33 1 4.6170 -0.0342 -2.7792 34 1 3.7747 1.1694 -1.7742 35 1 5.2320 0.3561 -1.1552 36 1 6.9796 -1.8193 -2.0195 37 1 2.2490 -1.6317 1.1526 38 1 4.0160 -1.9789 2.4869 39 1 4.7249 -0.4562 3.0763 40 1 4.4162 -1.7926 4.2110 41 1 2.8428 3.0540 5.8224 42 1 4.2150 2.1444 6.5292 43 1 1.3597 1.7301 6.9977 44 1 2.7303 0.8179 7.7044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -94.081732 kcal Electronic energy + Delta-G solvation = -27841.184800 eV Core-core repulsion = 23987.103657 eV Total energy + Delta-G solvation = -3854.081143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.06241 -40.69034 -39.59194 -38.12473 -36.90890 -35.79779 -35.35729 -33.22458 -32.04131 -30.69954 -28.10898 -27.40531 -27.07714 -25.98286 -23.74763 -23.32038 -22.48307 -21.39461 -20.31740 -18.97802 -18.43891 -18.22463 -17.63954 -17.21771 -16.96949 -16.82894 -16.03227 -15.69932 -15.56298 -15.27414 -15.17180 -14.92476 -14.84630 -14.60579 -14.58127 -13.94961 -13.86886 -13.64865 -13.39319 -13.32275 -13.13254 -12.96255 -12.83747 -12.70530 -12.54962 -12.21758 -12.08932 -12.04445 -11.87531 -11.79965 -11.53282 -11.37646 -10.99988 -10.59365 -10.56279 -9.97616 -8.81258 -7.78978 -5.21953 0.56080 1.33890 1.46078 1.48016 1.54993 1.56244 1.73976 2.35061 2.52050 3.21382 3.29225 3.36235 3.57397 3.65445 3.70657 3.78431 3.84457 4.06135 4.16974 4.19317 4.37239 4.46173 4.53803 4.67615 4.72853 4.74718 4.81167 4.82853 4.90292 4.92523 4.96000 5.03823 5.11814 5.28854 5.42329 5.57007 5.63323 5.71868 5.84639 6.30992 6.36673 6.54708 6.79200 7.13760 7.23391 7.88090 8.33690 9.25985 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.005205 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.593138 B = 5378.346347 C = 6248.983745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 H 0.045 0.955 4 C 0.143 3.857 5 N -0.615 5.615 6 C 0.184 3.816 7 C -0.238 4.238 8 H 0.086 0.914 9 C -0.059 4.059 10 N -0.944 5.944 11 Si 0.950 3.050 12 H -0.286 1.286 13 H -0.308 1.308 14 H -0.252 1.252 15 N -0.688 5.688 16 C 0.506 3.494 17 O -0.575 6.575 18 C 0.110 3.890 19 H 0.139 0.861 20 C -0.153 4.153 21 N -0.566 5.566 22 C 0.514 3.486 23 O -0.515 6.515 24 C -0.140 4.140 25 C -0.135 4.135 26 C 0.522 3.478 27 O -0.522 6.522 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.005 0.995 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.243 0.757 37 H 0.406 0.594 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 3.948 17.640 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.063 0.937 4 C 0.016 3.984 5 N -0.337 5.337 6 C 0.038 3.962 7 C -0.368 4.368 8 H 0.104 0.896 9 C -0.253 4.253 10 N -0.592 5.592 11 Si 0.779 3.221 12 H -0.213 1.213 13 H -0.235 1.235 14 H -0.176 1.176 15 N -0.339 5.339 16 C 0.291 3.709 17 O -0.455 6.455 18 C 0.003 3.997 19 H 0.157 0.843 20 C -0.211 4.211 21 N -0.309 5.309 22 C 0.305 3.695 23 O -0.388 6.388 24 C -0.179 4.179 25 C -0.173 4.173 26 C 0.314 3.686 27 O -0.397 6.397 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.052 0.948 37 H 0.243 0.757 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.692 4.439 17.206 20.241 hybrid contribution 1.203 -1.026 -0.447 1.643 sum -8.489 3.413 16.759 19.094 Atomic orbital electron populations 1.21999 0.93468 1.02812 1.02106 1.21725 0.94344 0.96252 0.85888 0.93653 1.21234 0.83280 0.99496 0.94405 1.44097 1.00832 1.20646 1.68133 1.20451 0.92347 0.87295 0.96089 1.19439 0.94146 1.03519 1.19679 0.89648 1.25631 0.99300 1.01404 0.98919 1.70271 1.10430 1.47822 1.30665 0.85531 0.77527 0.78794 0.80252 1.21335 1.23497 1.17607 1.45831 1.65060 1.14398 1.08569 1.20744 0.77356 0.87152 0.85672 1.90618 1.52294 1.16919 1.85678 1.21190 1.00965 0.92526 0.84990 0.84299 1.22044 0.93334 1.01709 1.04012 1.46805 1.42974 1.24159 1.16915 1.21852 0.76844 0.80095 0.90689 1.90788 1.38192 1.68704 1.41085 1.22578 1.04397 1.00785 0.90171 1.22586 1.03494 0.92573 0.98670 1.21791 0.76585 0.87886 0.82308 1.90745 1.36104 1.34926 1.77941 0.90062 0.90958 0.94038 0.91497 0.91419 0.97680 0.96727 0.96812 0.94804 0.75656 0.89860 0.93085 0.89303 0.84543 0.83317 0.83644 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 2 C 0.13 4.42 2.88 44.99 0.13 4.55 16 3 H 0.05 1.91 7.58 -2.38 -0.02 1.89 16 4 C 0.14 5.33 5.30 86.38 0.46 5.78 16 5 N -0.61 -29.51 2.82 -726.94 -2.05 -31.56 16 6 C 0.18 9.46 8.97 127.77 1.15 10.60 16 7 C -0.24 -11.95 8.81 84.03 0.74 -11.21 16 8 H 0.09 3.86 6.39 -2.91 -0.02 3.84 16 9 C -0.06 -3.17 5.10 84.86 0.43 -2.74 16 10 N -0.94 -55.93 10.44 21.65 0.23 -55.70 16 11 Si 0.95 43.26 29.58 68.60 2.03 45.29 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 14 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 15 N -0.69 -24.49 4.38 -442.52 -1.94 -26.43 16 16 C 0.51 18.90 6.76 87.66 0.59 19.49 16 17 O -0.57 -24.88 14.49 12.13 0.18 -24.70 16 18 C 0.11 3.40 3.12 44.24 0.14 3.54 16 19 H 0.14 3.80 7.41 -2.39 -0.02 3.78 16 20 C -0.15 -4.90 9.06 71.98 0.65 -4.25 16 21 N -0.57 -15.54 2.28 -738.15 -1.68 -17.21 16 22 C 0.51 14.36 6.70 87.99 0.59 14.95 16 23 O -0.51 -20.08 15.13 12.31 0.19 -19.89 16 24 C -0.14 -1.77 7.03 30.46 0.21 -1.56 16 25 C -0.13 -1.29 7.03 30.46 0.21 -1.07 16 26 C 0.52 11.55 8.08 87.99 0.71 12.26 16 27 O -0.52 -14.57 17.23 -2.88 -0.05 -14.62 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 32 H 0.07 2.34 8.04 -2.38 -0.02 2.32 16 33 H 0.00 0.27 7.49 -2.39 -0.02 0.25 16 34 H 0.01 0.66 8.03 -2.38 -0.02 0.65 16 35 H 0.01 0.76 6.96 -2.39 -0.02 0.75 16 36 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.41 13.71 6.00 -92.71 -0.56 13.16 16 38 H 0.08 2.78 7.57 -2.38 -0.02 2.76 16 39 H 0.05 1.97 6.63 -2.39 -0.02 1.95 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.15 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -79.82 359.60 4.05 -75.76 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.46 Total: 22.04 kcal Atomic # 6 Polarization: 40.32 SS G_CDS: 6.70 Total: 47.02 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.45 Total: -130.90 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: 0.31 Total: -59.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -79.82 4.05 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.320 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds