Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47353 * 2 1 4 4 C 1.52997 * 109.47083 * 120.00010 * 2 1 3 5 5 N 1.46497 * 109.47333 * 174.99920 * 4 2 1 6 6 C 1.46499 * 120.00301 * 270.00209 * 5 4 2 7 7 C 1.36941 * 119.99901 * 89.99468 * 5 4 2 8 8 H 1.07995 * 120.00031 * 20.38137 * 7 5 4 9 9 C 1.38815 * 119.99964 * 200.37388 * 7 5 4 10 10 N 1.31619 * 119.99992 * 15.03211 * 9 7 5 11 11 Si 1.86800 * 119.99853 * 195.02435 * 9 7 5 12 12 H 1.48498 * 109.47362 * 85.00639 * 11 9 7 13 13 H 1.48507 * 109.46966 * 205.00551 * 11 9 7 14 14 H 1.48505 * 109.47466 * 325.00202 * 11 9 7 15 15 N 1.46500 * 109.47065 * 239.99703 * 2 1 3 16 16 C 1.34778 * 120.00207 * 84.99968 * 15 2 1 17 17 O 1.21279 * 119.99622 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00241 * 179.97438 * 16 15 2 19 19 H 1.08999 * 109.46909 * 60.00702 * 18 16 15 20 20 C 1.53000 * 109.47308 * 300.00083 * 18 16 15 21 21 N 1.46500 * 109.46878 * 180.02562 * 18 16 15 22 22 C 1.33877 * 122.76068 * 240.00230 * 21 18 16 23 23 O 1.21223 * 125.39766 * 359.97438 * 22 21 18 24 24 C 1.51315 * 109.20493 * 180.02562 * 22 21 18 25 25 C 1.54228 * 103.69543 * 359.92136 * 24 22 21 26 26 C 1.33879 * 122.76528 * 60.00311 * 21 18 16 27 27 O 1.21225 * 125.39259 * 0.02562 * 26 21 18 28 28 H 1.08999 * 109.47254 * 60.00108 * 1 2 3 29 29 H 1.09008 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47233 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.47026 * 294.99786 * 4 2 1 32 32 H 1.09000 * 109.47590 * 54.99594 * 4 2 1 33 33 H 1.09001 * 109.47520 * 95.15538 * 6 5 4 34 34 H 1.09001 * 109.46870 * 215.15543 * 6 5 4 35 35 H 1.08997 * 109.46635 * 335.15121 * 6 5 4 36 36 H 0.97000 * 120.00079 * 180.02562 * 10 9 7 37 37 H 0.97006 * 120.00192 * 264.99687 * 15 2 1 38 38 H 1.09001 * 109.46949 * 299.99901 * 20 18 16 39 39 H 1.09005 * 109.46544 * 59.99989 * 20 18 16 40 40 H 1.09001 * 109.47241 * 179.97438 * 20 18 16 41 41 H 1.09009 * 110.60634 * 118.51756 * 24 22 21 42 42 H 1.08998 * 110.60888 * 241.32339 * 24 22 21 43 43 H 1.09006 * 110.60601 * 118.59545 * 25 24 22 44 44 H 1.08992 * 110.60597 * 241.55978 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1649 1.7240 8 1 3.8670 0.8402 2.4587 9 6 5.6010 0.3015 1.3204 10 7 6.0234 -0.3083 0.2332 11 14 6.7792 1.3510 2.3203 12 1 7.3498 0.5390 3.4250 13 1 7.8762 1.8352 1.4442 14 1 6.0484 2.5132 2.8866 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8590 1.1584 -2.4115 18 6 2.6499 -0.7287 -3.5875 19 1 1.9776 -1.5510 -3.8325 20 6 4.0526 -1.2787 -3.3214 21 7 2.6996 0.2127 -4.7088 22 6 2.0010 0.0335 -5.8367 23 8 1.2632 -0.9009 -6.0647 24 6 2.2792 1.1816 -6.7822 25 6 3.2688 2.0682 -5.9990 26 6 3.4474 1.3231 -4.6900 27 8 4.1552 1.6774 -3.7719 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 4.3633 -1.7605 -0.4771 34 1 5.0414 -2.2455 1.0956 35 1 3.4383 -2.8370 0.5971 36 1 6.9466 -0.2131 -0.0486 37 1 2.2491 -1.6319 -1.1525 38 1 4.7248 -0.4563 -3.0764 39 1 4.0159 -1.9790 -2.4869 40 1 4.4161 -1.7928 -4.2111 41 1 2.7357 0.8183 -7.7031 42 1 1.3627 1.7299 -7.0002 43 1 4.2175 2.1459 -6.5301 44 1 2.8434 3.0564 -5.8249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = -70.525105 kcal Electronic energy + Delta-G solvation = -27917.522369 eV Core-core repulsion = 24064.462718 eV Total energy + Delta-G solvation = -3853.059651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92072 -39.19005 -38.36988 -36.38367 -35.66241 -34.19707 -33.99815 -31.47087 -30.54830 -29.38723 -26.19271 -26.13777 -25.60846 -24.57073 -22.39987 -21.97291 -20.84480 -19.94561 -18.99521 -17.44530 -17.07885 -16.74224 -16.55681 -15.83131 -15.44128 -14.85932 -14.70567 -14.28043 -14.08338 -13.89501 -13.85745 -13.72715 -13.47690 -13.22454 -13.02660 -12.82182 -12.30727 -12.22480 -12.04824 -11.85573 -11.56705 -11.43724 -11.42009 -11.08488 -10.81959 -10.75410 -10.52944 -10.43323 -10.18567 -10.02308 -9.93117 -9.79803 -9.78309 -9.09669 -8.57132 -8.35212 -6.74409 -5.68926 -3.11020 1.63439 2.45582 2.84144 3.10766 3.42923 3.49360 3.50554 3.75502 4.04794 4.20661 4.38553 4.55316 4.72344 4.99297 5.10673 5.14692 5.28930 5.35778 5.40690 5.46302 5.50588 5.51587 5.69786 5.83966 5.88179 5.99923 6.05441 6.10465 6.24125 6.47199 6.51350 6.53871 6.62996 6.88956 6.95309 7.15943 7.32467 7.40789 7.66070 7.84945 7.91838 8.07850 8.41180 8.75043 9.26411 9.89476 10.36207 11.36651 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.004988 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.256913 B = 5612.211444 C = 6505.875743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.159 3.841 7 C -0.258 4.258 8 H 0.068 0.932 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.692 5.692 16 C 0.516 3.484 17 O -0.538 6.538 18 C 0.109 3.891 19 H 0.121 0.879 20 C -0.158 4.158 21 N -0.556 5.556 22 C 0.529 3.471 23 O -0.495 6.495 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.522 3.478 27 O -0.444 6.444 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.043 0.957 35 H -0.006 1.006 36 H 0.251 0.749 37 H 0.395 0.605 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 -1.528 -13.020 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.014 3.986 7 C -0.387 4.387 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.341 5.341 16 C 0.300 3.700 17 O -0.415 6.415 18 C 0.004 3.996 19 H 0.138 0.862 20 C -0.216 4.216 21 N -0.299 5.299 22 C 0.319 3.681 23 O -0.369 6.369 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.310 3.690 27 O -0.311 6.311 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.012 0.988 36 H 0.061 0.939 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.845 -0.999 -12.675 14.939 hybrid contribution 0.831 0.163 0.479 0.973 sum -7.014 -0.836 -12.195 14.093 Atomic orbital electron populations 1.22151 0.96902 1.01083 1.01625 1.21899 0.91577 0.99236 0.86231 0.89626 1.21183 0.85849 0.97189 0.94277 1.43897 0.98987 1.20854 1.68075 1.20905 0.94544 0.85071 0.98038 1.19135 0.92900 1.09838 1.16853 0.91446 1.24903 0.98554 0.99302 0.96422 1.70037 1.15825 1.46602 1.21899 0.86308 0.81007 0.80057 0.79346 1.21637 1.21850 1.20678 1.45646 1.65931 1.13593 1.08969 1.20169 0.77806 0.87383 0.84689 1.90653 1.50484 1.15444 1.84929 1.21275 1.01328 0.91731 0.85285 0.86158 1.22111 0.93652 1.03240 1.02553 1.46479 1.42615 1.24136 1.16709 1.20796 0.77826 0.87046 0.82465 1.90745 1.35067 1.33441 1.77601 1.22429 1.02441 0.95276 0.99222 1.22506 1.02250 1.00870 0.93786 1.20760 0.78613 0.80223 0.89417 1.90888 1.35292 1.66989 1.37959 0.93142 0.93153 0.92051 0.92273 0.94011 0.94798 0.93818 0.98759 0.93925 0.77091 0.89226 0.89557 0.91948 0.86371 0.86364 0.86474 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.06 16 3 H 0.09 2.01 7.58 -51.93 -0.39 1.62 16 4 C 0.14 2.79 5.33 -4.05 -0.02 2.77 16 5 N -0.60 -14.27 2.78 -181.12 -0.50 -14.77 16 6 C 0.16 3.62 7.60 59.85 0.45 4.08 16 7 C -0.26 -7.04 9.68 -15.06 -0.15 -7.18 16 8 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 9 C 0.01 0.20 5.06 -17.43 -0.09 0.11 16 10 N -0.90 -25.74 10.67 55.49 0.59 -25.14 16 11 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 N -0.69 -12.76 4.31 -53.81 -0.23 -12.99 16 16 C 0.52 10.10 6.76 -10.99 -0.07 10.02 16 17 O -0.54 -12.29 14.46 -10.70 -0.15 -12.45 16 18 C 0.11 1.77 3.12 -69.08 -0.22 1.56 16 19 H 0.12 1.71 7.41 -51.93 -0.38 1.33 16 20 C -0.16 -2.56 9.07 37.16 0.34 -2.22 16 21 N -0.56 -8.38 2.28 -109.34 -0.25 -8.63 16 22 C 0.53 6.81 8.08 -11.08 -0.09 6.72 16 23 O -0.50 -7.57 17.23 5.61 0.10 -7.47 16 24 C -0.15 -1.20 7.02 -26.94 -0.19 -1.39 16 25 C -0.15 -1.41 7.05 -26.76 -0.19 -1.60 16 26 C 0.52 8.19 6.71 -10.91 -0.07 8.11 16 27 O -0.44 -9.31 15.12 -10.65 -0.16 -9.47 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.03 0.81 5.66 -51.93 -0.29 0.51 16 34 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 35 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.39 6.60 6.60 -40.82 -0.27 6.33 16 38 H 0.09 1.83 6.64 -51.93 -0.34 1.48 16 39 H 0.09 1.38 6.25 -51.93 -0.32 1.06 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.12 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -35.87 357.97 -6.93 -42.80 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.55 Total: 4.39 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: -0.14 Total: 20.94 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.39 Total: -61.53 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.22 Total: -29.40 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.87 -6.93 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.722 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds