Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47353 * 2 1 4 4 C 1.52997 * 109.47083 * 120.00010 * 2 1 3 5 5 N 1.46497 * 109.47333 * 174.99920 * 4 2 1 6 6 C 1.46499 * 120.00301 * 270.00209 * 5 4 2 7 7 C 1.36941 * 119.99901 * 89.99468 * 5 4 2 8 8 H 1.07995 * 120.00031 * 20.38137 * 7 5 4 9 9 C 1.38815 * 119.99964 * 200.37388 * 7 5 4 10 10 N 1.31619 * 119.99992 * 15.03211 * 9 7 5 11 11 Si 1.86800 * 119.99853 * 195.02435 * 9 7 5 12 12 H 1.48498 * 109.47362 * 85.00639 * 11 9 7 13 13 H 1.48507 * 109.46966 * 205.00551 * 11 9 7 14 14 H 1.48505 * 109.47466 * 325.00202 * 11 9 7 15 15 N 1.46500 * 109.47065 * 239.99703 * 2 1 3 16 16 C 1.34778 * 120.00207 * 84.99968 * 15 2 1 17 17 O 1.21279 * 119.99622 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00241 * 179.97438 * 16 15 2 19 19 H 1.08999 * 109.46909 * 60.00702 * 18 16 15 20 20 C 1.53000 * 109.47308 * 300.00083 * 18 16 15 21 21 N 1.46500 * 109.46878 * 180.02562 * 18 16 15 22 22 C 1.33877 * 122.76068 * 240.00230 * 21 18 16 23 23 O 1.21223 * 125.39766 * 359.97438 * 22 21 18 24 24 C 1.51315 * 109.20493 * 180.02562 * 22 21 18 25 25 C 1.54228 * 103.69543 * 359.92136 * 24 22 21 26 26 C 1.33879 * 122.76528 * 60.00311 * 21 18 16 27 27 O 1.21225 * 125.39259 * 0.02562 * 26 21 18 28 28 H 1.08999 * 109.47254 * 60.00108 * 1 2 3 29 29 H 1.09008 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47233 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.47026 * 294.99786 * 4 2 1 32 32 H 1.09000 * 109.47590 * 54.99594 * 4 2 1 33 33 H 1.09001 * 109.47520 * 95.15538 * 6 5 4 34 34 H 1.09001 * 109.46870 * 215.15543 * 6 5 4 35 35 H 1.08997 * 109.46635 * 335.15121 * 6 5 4 36 36 H 0.97000 * 120.00079 * 180.02562 * 10 9 7 37 37 H 0.97006 * 120.00192 * 264.99687 * 15 2 1 38 38 H 1.09001 * 109.46949 * 299.99901 * 20 18 16 39 39 H 1.09005 * 109.46544 * 59.99989 * 20 18 16 40 40 H 1.09001 * 109.47241 * 179.97438 * 20 18 16 41 41 H 1.09009 * 110.60634 * 118.51756 * 24 22 21 42 42 H 1.08998 * 110.60888 * 241.32339 * 24 22 21 43 43 H 1.09006 * 110.60601 * 118.59545 * 25 24 22 44 44 H 1.08992 * 110.60597 * 241.55978 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1649 1.7240 8 1 3.8670 0.8402 2.4587 9 6 5.6010 0.3015 1.3204 10 7 6.0234 -0.3083 0.2332 11 14 6.7792 1.3510 2.3203 12 1 7.3498 0.5390 3.4250 13 1 7.8762 1.8352 1.4442 14 1 6.0484 2.5132 2.8866 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8590 1.1584 -2.4115 18 6 2.6499 -0.7287 -3.5875 19 1 1.9776 -1.5510 -3.8325 20 6 4.0526 -1.2787 -3.3214 21 7 2.6996 0.2127 -4.7088 22 6 2.0010 0.0335 -5.8367 23 8 1.2632 -0.9009 -6.0647 24 6 2.2792 1.1816 -6.7822 25 6 3.2688 2.0682 -5.9990 26 6 3.4474 1.3231 -4.6900 27 8 4.1552 1.6774 -3.7719 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 4.3633 -1.7605 -0.4771 34 1 5.0414 -2.2455 1.0956 35 1 3.4383 -2.8370 0.5971 36 1 6.9466 -0.2131 -0.0486 37 1 2.2491 -1.6319 -1.1525 38 1 4.7248 -0.4563 -3.0764 39 1 4.0159 -1.9790 -2.4869 40 1 4.4161 -1.7928 -4.2111 41 1 2.7357 0.8183 -7.7031 42 1 1.3627 1.7299 -7.0002 43 1 4.2175 2.1459 -6.5301 44 1 2.8434 3.0564 -5.8249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -95.946987 kcal Electronic energy + Delta-G solvation = -27918.624744 eV Core-core repulsion = 24064.462718 eV Total energy + Delta-G solvation = -3854.162027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.03806 -40.67279 -39.57889 -38.08541 -36.89645 -35.78481 -35.33814 -33.15094 -32.13114 -30.69092 -27.99693 -27.41960 -27.05193 -25.95140 -23.71577 -23.28805 -22.41455 -21.48754 -20.25259 -18.84679 -18.62869 -18.23116 -17.65373 -17.19047 -16.96630 -16.67813 -16.01555 -15.69415 -15.51228 -15.28892 -15.18716 -15.05328 -14.84703 -14.64582 -14.48915 -13.90045 -13.81927 -13.64041 -13.31681 -13.30642 -13.08877 -12.92836 -12.84602 -12.66489 -12.57381 -12.31151 -12.09486 -12.03787 -11.83156 -11.72383 -11.51853 -11.36228 -10.97900 -10.63293 -10.53803 -9.98033 -8.73245 -7.80898 -5.22855 0.57732 1.35394 1.42160 1.43462 1.50349 1.59371 1.75930 2.36470 2.51476 3.21702 3.29210 3.32639 3.59821 3.65788 3.72829 3.81998 3.85948 4.11219 4.18972 4.20960 4.38242 4.49149 4.59032 4.70070 4.73402 4.73730 4.82057 4.87638 4.89874 4.91848 4.97548 5.11815 5.14719 5.34300 5.38535 5.64595 5.66144 5.82135 5.86649 6.33978 6.38150 6.54274 6.82065 7.19089 7.25407 7.91790 8.30867 9.20915 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.004988 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.256913 B = 5612.211444 C = 6505.875743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 H 0.032 0.968 4 C 0.143 3.857 5 N -0.610 5.610 6 C 0.170 3.830 7 C -0.262 4.262 8 H 0.064 0.936 9 C -0.047 4.047 10 N -0.919 5.919 11 Si 0.955 3.045 12 H -0.281 1.281 13 H -0.302 1.302 14 H -0.278 1.278 15 N -0.688 5.688 16 C 0.506 3.494 17 O -0.578 6.578 18 C 0.111 3.889 19 H 0.143 0.857 20 C -0.143 4.143 21 N -0.565 5.565 22 C 0.523 3.477 23 O -0.521 6.521 24 C -0.134 4.134 25 C -0.140 4.140 26 C 0.509 3.491 27 O -0.514 6.514 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.019 0.981 34 H 0.011 0.989 35 H 0.037 0.963 36 H 0.242 0.758 37 H 0.404 0.596 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 -2.179 -14.608 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.025 3.975 7 C -0.393 4.393 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.565 5.565 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.229 1.229 14 H -0.203 1.203 15 N -0.337 5.337 16 C 0.291 3.709 17 O -0.458 6.458 18 C 0.005 3.995 19 H 0.160 0.840 20 C -0.201 4.201 21 N -0.308 5.308 22 C 0.316 3.684 23 O -0.396 6.396 24 C -0.173 4.173 25 C -0.179 4.179 26 C 0.300 3.700 27 O -0.386 6.386 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.240 0.760 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.493 -1.681 -14.272 17.223 hybrid contribution 1.249 0.335 0.998 1.634 sum -8.244 -1.346 -13.274 15.683 Atomic orbital electron populations 1.22007 0.93533 1.02951 1.01781 1.21699 0.94063 0.96246 0.86375 0.95007 1.21362 0.83358 0.99306 0.94358 1.44092 1.00775 1.20436 1.67947 1.20724 0.94280 0.86020 0.96465 1.19387 0.93442 1.10011 1.16453 0.91845 1.25555 1.00090 1.01082 0.97555 1.70190 1.15300 1.48031 1.23008 0.85463 0.79005 0.78926 0.78098 1.20759 1.22897 1.20302 1.45647 1.65506 1.13946 1.08645 1.20823 0.77102 0.87128 0.85862 1.90616 1.52225 1.17204 1.85739 1.21217 1.01171 0.92401 0.84715 0.83972 1.21940 0.92932 1.01514 1.03705 1.46785 1.43057 1.24006 1.16976 1.21739 0.76573 0.87863 0.82261 1.90733 1.36017 1.34890 1.77963 1.22581 1.03396 0.92608 0.98706 1.22644 1.04438 1.00724 0.90080 1.22002 0.76942 0.80287 0.90763 1.90853 1.38215 1.68572 1.40972 0.94507 0.90300 0.90403 0.91855 0.90299 0.96282 0.97041 0.94506 0.94884 0.75986 0.93829 0.89707 0.89207 0.82471 0.83657 0.83378 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.48 71.98 0.68 -3.54 16 2 C 0.12 4.73 2.88 44.99 0.13 4.86 16 3 H 0.03 1.56 7.58 -2.39 -0.02 1.54 16 4 C 0.14 5.38 5.33 86.38 0.46 5.84 16 5 N -0.61 -29.27 2.78 -726.95 -2.02 -31.29 16 6 C 0.17 7.72 7.60 127.77 0.97 8.69 16 7 C -0.26 -14.60 9.68 84.03 0.81 -13.78 16 8 H 0.06 3.51 7.86 -2.91 -0.02 3.48 16 9 C -0.05 -2.69 5.06 84.86 0.43 -2.26 16 10 N -0.92 -54.67 10.67 21.65 0.23 -54.44 16 11 Si 0.96 47.36 29.58 68.60 2.03 49.39 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 15 N -0.69 -25.53 4.31 -442.54 -1.91 -27.44 16 16 C 0.51 20.39 6.76 87.66 0.59 20.98 16 17 O -0.58 -27.63 14.46 12.52 0.18 -27.44 16 18 C 0.11 3.63 3.12 44.24 0.14 3.77 16 19 H 0.14 3.93 7.41 -2.39 -0.02 3.92 16 20 C -0.14 -4.77 9.07 71.98 0.65 -4.12 16 21 N -0.57 -16.81 2.28 -737.69 -1.68 -18.49 16 22 C 0.52 12.36 8.08 87.99 0.71 13.07 16 23 O -0.52 -14.90 17.23 -2.86 -0.05 -14.94 16 24 C -0.13 -1.53 7.02 30.46 0.21 -1.31 16 25 C -0.14 -2.16 7.05 30.57 0.22 -1.95 16 26 C 0.51 16.06 6.71 88.11 0.59 16.65 16 27 O -0.51 -22.85 15.12 12.68 0.19 -22.65 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 32 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 33 H 0.02 0.92 5.66 -2.39 -0.01 0.91 16 34 H 0.01 0.56 7.22 -2.39 -0.02 0.54 16 35 H 0.04 1.34 7.83 -2.39 -0.02 1.32 16 36 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.40 13.24 6.60 -92.70 -0.61 12.63 16 38 H 0.04 1.88 6.64 -2.39 -0.02 1.87 16 39 H 0.08 2.78 6.25 -2.38 -0.01 2.77 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.16 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.15 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -84.97 357.97 3.98 -81.00 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.41 Total: 19.42 kcal Atomic # 6 Polarization: 40.30 SS G_CDS: 6.60 Total: 46.90 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -5.38 Total: -131.66 kcal Atomic # 8 Polarization: -65.37 SS G_CDS: 0.32 Total: -65.04 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -84.97 3.98 -81.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.951 kcal (2) G-P(sol) polarization free energy of solvation -84.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds