Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.50702 * 109.47125 * 239.99937 * 2 1 3 5 5 O 1.21278 * 119.99815 * 239.99889 * 4 2 1 6 6 N 1.34775 * 119.99668 * 59.99848 * 4 2 1 7 7 C 1.46502 * 119.99729 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.47260 * 325.00266 * 7 6 4 9 9 C 1.53004 * 109.47288 * 85.00168 * 7 6 4 10 10 C 1.52995 * 109.47394 * 205.00073 * 7 6 4 11 11 N 1.46500 * 109.46979 * 55.00035 * 10 7 6 12 12 C 1.46508 * 119.99951 * 269.99930 * 11 10 7 13 13 C 1.36936 * 120.00189 * 90.00201 * 11 10 7 14 14 H 1.07998 * 119.99612 * 23.61810 * 13 11 10 15 15 C 1.38813 * 120.00164 * 203.61820 * 13 11 10 16 16 N 1.31614 * 120.00145 * 11.30409 * 15 13 11 17 17 Si 1.86797 * 119.99990 * 191.30749 * 15 13 11 18 18 H 1.48504 * 109.47187 * 89.99871 * 17 15 13 19 19 H 1.48501 * 109.47307 * 209.99757 * 17 15 13 20 20 H 1.48493 * 109.47157 * 329.99988 * 17 15 13 21 21 N 1.46497 * 109.47257 * 120.00104 * 2 1 3 22 22 C 1.33875 * 122.76361 * 59.70618 * 21 2 1 23 23 O 1.21224 * 125.39707 * 359.97438 * 22 21 2 24 24 C 1.51316 * 109.20815 * 179.84513 * 22 21 2 25 25 C 1.54228 * 103.55138 * 0.38854 * 24 22 21 26 26 C 1.33876 * 122.76163 * 240.00425 * 21 2 1 27 27 O 1.21227 * 125.39295 * 0.02562 * 26 21 2 28 28 H 1.09004 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47147 * 300.00025 * 1 2 3 30 30 H 1.09002 * 109.46874 * 60.00083 * 1 2 3 31 31 H 0.96994 * 120.00539 * 0.02562 * 6 4 2 32 32 H 1.08998 * 109.47318 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.47071 * 299.99982 * 9 7 6 34 34 H 1.09005 * 109.46890 * 59.99871 * 9 7 6 35 35 H 1.09006 * 109.47547 * 175.00067 * 10 7 6 36 36 H 1.09004 * 109.47239 * 295.00407 * 10 7 6 37 37 H 1.08995 * 109.46683 * 94.54030 * 12 11 10 38 38 H 1.08999 * 109.47076 * 214.53371 * 12 11 10 39 39 H 1.08998 * 109.47012 * 334.53556 * 12 11 10 40 40 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.79536 * 241.78287 * 24 22 21 42 42 H 1.08998 * 110.54829 * 118.87412 * 24 22 21 43 43 H 1.09007 * 110.60693 * 241.25512 * 25 24 22 44 44 H 1.09004 * 110.73941 * 118.36423 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4545 7 6 2.1955 -0.9402 -3.6507 8 1 3.1949 -1.3321 -3.4613 9 6 1.2520 -2.0945 -3.9949 10 6 2.2468 0.0429 -4.8218 11 7 3.0547 1.2063 -4.4477 12 6 2.4197 2.3677 -3.8195 13 6 4.4033 1.2084 -4.6851 14 1 4.8169 0.5743 -5.4554 15 6 5.2387 2.0255 -3.9359 16 7 4.7787 2.6267 -2.8593 17 14 7.0159 2.2718 -4.4558 18 1 7.1070 3.4381 -5.3706 19 1 7.8534 2.5185 -3.2545 20 1 7.5002 1.0549 -5.1555 21 7 2.0184 -0.6906 1.1961 22 6 1.7245 -1.9686 1.4656 23 8 1.0387 -2.6919 0.7756 24 6 2.3867 -2.3682 2.7661 25 6 3.1137 -1.0829 3.2113 26 6 2.7905 -0.0939 2.1127 27 8 3.1702 1.0565 2.0695 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1494 0.5389 -2.5436 32 1 1.6159 -2.6084 -4.8846 33 1 1.2155 -2.7950 -3.1605 34 1 0.2526 -1.7027 -4.1843 35 1 2.6932 -0.4462 -5.6877 36 1 1.2357 0.3670 -5.0687 37 1 2.4977 2.2823 -2.7357 38 1 2.9203 3.2781 -4.1492 39 1 1.3688 2.4066 -4.1063 40 1 5.3625 3.1973 -2.3355 41 1 3.1003 -3.1763 2.6048 42 1 1.6381 -2.6601 3.5027 43 1 4.1889 -1.2516 3.2716 44 1 2.7274 -0.7328 4.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = -72.366683 kcal Electronic energy + Delta-G solvation = -27770.002386 eV Core-core repulsion = 23916.862878 eV Total energy + Delta-G solvation = -3853.139508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95658 -39.17477 -38.40470 -36.39487 -35.69264 -34.24117 -34.00999 -31.47805 -30.56194 -29.51594 -26.17941 -26.16971 -25.59331 -24.69868 -22.43551 -22.01504 -20.83996 -19.93379 -19.02808 -17.48174 -17.10176 -16.73513 -16.59904 -15.87063 -15.40683 -14.85320 -14.69688 -14.51339 -14.12788 -13.95069 -13.86983 -13.70791 -13.38186 -13.19814 -13.06538 -12.94986 -12.44111 -12.39799 -12.09758 -11.89577 -11.71769 -11.46461 -11.41007 -11.07894 -10.83163 -10.77291 -10.54117 -10.43088 -10.20451 -10.07790 -9.94009 -9.87683 -9.84200 -9.10611 -8.58892 -8.36021 -6.73899 -5.71308 -3.17820 1.62621 2.42519 2.80444 3.15122 3.40061 3.46539 3.48139 3.70757 4.05723 4.18989 4.36151 4.52114 4.70449 4.93065 4.97457 5.12170 5.27585 5.32197 5.41296 5.46058 5.48263 5.50350 5.61161 5.72204 5.76987 5.90058 6.00736 6.02800 6.12112 6.26414 6.49844 6.56418 6.64503 6.89472 6.90959 7.17062 7.31555 7.41862 7.65460 7.82012 7.83935 8.08478 8.40667 8.76357 9.24297 9.86384 10.34589 11.33886 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.005060 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.670165 B = 5532.627655 C = 6581.706128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 H 0.132 0.868 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.691 5.691 7 C 0.119 3.881 8 H 0.084 0.916 9 C -0.158 4.158 10 C 0.143 3.857 11 N -0.597 5.597 12 C 0.161 3.839 13 C -0.258 4.258 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 N -0.556 5.556 22 C 0.533 3.467 23 O -0.470 6.470 24 C -0.155 4.155 25 C -0.154 4.154 26 C 0.525 3.475 27 O -0.477 6.477 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.395 0.605 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.043 0.957 39 H -0.005 1.005 40 H 0.252 0.748 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.251 -7.038 10.770 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 H 0.149 0.851 4 C 0.301 3.699 5 O -0.415 6.415 6 N -0.341 5.341 7 C 0.012 3.988 8 H 0.102 0.898 9 C -0.217 4.217 10 C 0.015 3.985 11 N -0.320 5.320 12 C 0.017 3.983 13 C -0.387 4.387 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 N -0.299 5.299 22 C 0.322 3.678 23 O -0.340 6.340 24 C -0.195 4.195 25 C -0.194 4.194 26 C 0.314 3.686 27 O -0.348 6.348 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.229 0.771 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.013 0.987 40 H 0.062 0.938 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.822 -7.361 10.508 16.158 hybrid contribution 0.940 0.662 -0.226 1.172 sum -8.882 -6.699 10.283 15.149 Atomic orbital electron populations 1.22091 0.91719 1.04315 1.03547 1.21277 0.96428 0.98719 0.83503 0.85069 1.20097 0.80503 0.84598 0.84663 1.90655 1.37925 1.26473 1.86435 1.45640 1.52443 1.31067 1.04945 1.21878 0.97801 0.92902 0.86220 0.89756 1.22144 0.99415 0.98845 1.01341 1.21202 0.94744 0.88437 0.94141 1.43888 1.04691 1.11850 1.71529 1.20848 0.90604 0.90004 0.96873 1.19160 0.82486 1.23755 1.13316 0.91469 1.25027 0.97776 1.00873 0.95619 1.70012 1.35074 1.34080 1.15594 0.86271 0.84975 0.77993 0.77383 1.21527 1.21802 1.20541 1.46431 1.47114 1.14365 1.21970 1.20609 0.79510 0.80442 0.87246 1.90731 1.35996 1.54300 1.53024 1.22435 1.01878 0.99445 0.95733 1.22439 1.04583 0.93490 0.98850 1.20830 0.76261 0.88102 0.83448 1.90822 1.50542 1.16915 1.76497 0.90406 0.91264 0.90117 0.77084 0.92148 0.92845 0.93201 0.92267 0.93996 0.95159 0.93808 0.98681 0.93774 0.86252 0.86517 0.86196 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.06 37.16 0.34 -1.64 16 2 C 0.11 1.73 3.12 -69.08 -0.22 1.52 16 3 H 0.13 2.27 7.41 -51.93 -0.38 1.89 16 4 C 0.52 10.23 6.76 -10.98 -0.07 10.16 16 5 O -0.54 -12.41 14.49 -10.30 -0.15 -12.56 16 6 N -0.69 -12.88 4.31 -53.80 -0.23 -13.11 16 7 C 0.12 2.30 2.88 -67.93 -0.20 2.10 16 8 H 0.08 1.98 7.58 -51.93 -0.39 1.58 16 9 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 10 C 0.14 2.80 5.33 -4.04 -0.02 2.78 16 11 N -0.60 -14.43 2.78 -181.11 -0.50 -14.94 16 12 C 0.16 3.75 7.61 59.85 0.46 4.20 16 13 C -0.26 -7.05 9.66 -15.06 -0.15 -7.19 16 14 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 15 C 0.01 0.16 5.13 -17.43 -0.09 0.08 16 16 N -0.90 -26.35 10.66 55.49 0.59 -25.76 16 17 Si 0.90 22.41 29.57 -169.99 -5.03 17.39 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 N -0.56 -8.40 2.27 -109.49 -0.25 -8.65 16 22 C 0.53 7.53 6.70 -11.09 -0.07 7.45 16 23 O -0.47 -8.10 15.13 -10.25 -0.16 -8.25 16 24 C -0.16 -1.31 7.03 -26.94 -0.19 -1.50 16 25 C -0.15 -1.29 7.03 -26.94 -0.19 -1.48 16 26 C 0.53 7.48 8.08 -11.09 -0.09 7.39 16 27 O -0.48 -8.62 17.23 5.60 0.10 -8.52 16 28 H 0.08 1.06 6.62 -51.93 -0.34 0.71 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.88 7.56 -51.93 -0.39 0.48 16 31 H 0.39 6.67 6.59 -40.82 -0.27 6.40 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 37 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 38 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 39 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -36.37 360.61 -7.01 -43.39 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.68 Total: 3.87 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: -0.14 Total: 21.71 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.39 Total: -62.45 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.21 Total: -29.34 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.37 -7.01 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.981 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds