Wall clock time and date at job start Tue Mar 31 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.50702 * 109.47125 * 239.99937 * 2 1 3 5 5 O 1.21278 * 119.99815 * 239.99889 * 4 2 1 6 6 N 1.34775 * 119.99668 * 59.99848 * 4 2 1 7 7 C 1.46502 * 119.99729 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.47260 * 325.00266 * 7 6 4 9 9 C 1.53004 * 109.47288 * 85.00168 * 7 6 4 10 10 C 1.52995 * 109.47394 * 205.00073 * 7 6 4 11 11 N 1.46500 * 109.46979 * 55.00035 * 10 7 6 12 12 C 1.46508 * 119.99951 * 269.99930 * 11 10 7 13 13 C 1.36936 * 120.00189 * 90.00201 * 11 10 7 14 14 H 1.07998 * 119.99612 * 23.61810 * 13 11 10 15 15 C 1.38813 * 120.00164 * 203.61820 * 13 11 10 16 16 N 1.31614 * 120.00145 * 11.30409 * 15 13 11 17 17 Si 1.86797 * 119.99990 * 191.30749 * 15 13 11 18 18 H 1.48504 * 109.47187 * 89.99871 * 17 15 13 19 19 H 1.48501 * 109.47307 * 209.99757 * 17 15 13 20 20 H 1.48493 * 109.47157 * 329.99988 * 17 15 13 21 21 N 1.46497 * 109.47257 * 120.00104 * 2 1 3 22 22 C 1.33875 * 122.76361 * 59.70618 * 21 2 1 23 23 O 1.21224 * 125.39707 * 359.97438 * 22 21 2 24 24 C 1.51316 * 109.20815 * 179.84513 * 22 21 2 25 25 C 1.54228 * 103.55138 * 0.38854 * 24 22 21 26 26 C 1.33876 * 122.76163 * 240.00425 * 21 2 1 27 27 O 1.21227 * 125.39295 * 0.02562 * 26 21 2 28 28 H 1.09004 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47147 * 300.00025 * 1 2 3 30 30 H 1.09002 * 109.46874 * 60.00083 * 1 2 3 31 31 H 0.96994 * 120.00539 * 0.02562 * 6 4 2 32 32 H 1.08998 * 109.47318 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.47071 * 299.99982 * 9 7 6 34 34 H 1.09005 * 109.46890 * 59.99871 * 9 7 6 35 35 H 1.09006 * 109.47547 * 175.00067 * 10 7 6 36 36 H 1.09004 * 109.47239 * 295.00407 * 10 7 6 37 37 H 1.08995 * 109.46683 * 94.54030 * 12 11 10 38 38 H 1.08999 * 109.47076 * 214.53371 * 12 11 10 39 39 H 1.08998 * 109.47012 * 334.53556 * 12 11 10 40 40 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.79536 * 241.78287 * 24 22 21 42 42 H 1.08998 * 110.54829 * 118.87412 * 24 22 21 43 43 H 1.09007 * 110.60693 * 241.25512 * 25 24 22 44 44 H 1.09004 * 110.73941 * 118.36423 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4545 7 6 2.1955 -0.9402 -3.6507 8 1 3.1949 -1.3321 -3.4613 9 6 1.2520 -2.0945 -3.9949 10 6 2.2468 0.0429 -4.8218 11 7 3.0547 1.2063 -4.4477 12 6 2.4197 2.3677 -3.8195 13 6 4.4033 1.2084 -4.6851 14 1 4.8169 0.5743 -5.4554 15 6 5.2387 2.0255 -3.9359 16 7 4.7787 2.6267 -2.8593 17 14 7.0159 2.2718 -4.4558 18 1 7.1070 3.4381 -5.3706 19 1 7.8534 2.5185 -3.2545 20 1 7.5002 1.0549 -5.1555 21 7 2.0184 -0.6906 1.1961 22 6 1.7245 -1.9686 1.4656 23 8 1.0387 -2.6919 0.7756 24 6 2.3867 -2.3682 2.7661 25 6 3.1137 -1.0829 3.2113 26 6 2.7905 -0.0939 2.1127 27 8 3.1702 1.0565 2.0695 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1494 0.5389 -2.5436 32 1 1.6159 -2.6084 -4.8846 33 1 1.2155 -2.7950 -3.1605 34 1 0.2526 -1.7027 -4.1843 35 1 2.6932 -0.4462 -5.6877 36 1 1.2357 0.3670 -5.0687 37 1 2.4977 2.2823 -2.7357 38 1 2.9203 3.2781 -4.1492 39 1 1.3688 2.4066 -4.1063 40 1 5.3625 3.1973 -2.3355 41 1 3.1003 -3.1763 2.6048 42 1 1.6381 -2.6601 3.5027 43 1 4.1889 -1.2516 3.2716 44 1 2.7274 -0.7328 4.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:58 Heat of formation + Delta-G solvation = -97.999609 kcal Electronic energy + Delta-G solvation = -27771.113913 eV Core-core repulsion = 23916.862878 eV Total energy + Delta-G solvation = -3854.251035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.06146 -40.68077 -39.59346 -38.10613 -36.90642 -35.80499 -35.34390 -33.18211 -32.11986 -30.75327 -28.00451 -27.43446 -27.08832 -25.92002 -23.78853 -23.30985 -22.42252 -21.48959 -20.27544 -18.85232 -18.68252 -18.26309 -17.67693 -17.16265 -17.00099 -16.62368 -16.17159 -15.75860 -15.54816 -15.27362 -15.16002 -15.01042 -14.89144 -14.57813 -14.50529 -14.00798 -13.79760 -13.65370 -13.35817 -13.28614 -13.11226 -12.94329 -12.86691 -12.69820 -12.56971 -12.32987 -12.10555 -12.07645 -11.86394 -11.74842 -11.55235 -11.37843 -11.00238 -10.68079 -10.54561 -9.98717 -8.75095 -7.84599 -5.31418 0.55005 1.33173 1.40847 1.41749 1.49721 1.60364 1.77777 2.31836 2.48350 3.20865 3.27844 3.29579 3.58753 3.64739 3.70039 3.78477 3.91271 4.11891 4.17719 4.21607 4.37536 4.49523 4.58507 4.69035 4.72607 4.74108 4.81138 4.86822 4.88619 4.90362 4.97103 4.98539 5.15547 5.33290 5.34978 5.62081 5.64544 5.75904 5.84205 6.31626 6.36518 6.53324 6.77717 7.15330 7.24619 7.87437 8.27879 9.17197 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.005060 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.670165 B = 5532.627655 C = 6581.706128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.104 3.896 3 H 0.113 0.887 4 C 0.507 3.493 5 O -0.579 6.579 6 N -0.687 5.687 7 C 0.125 3.875 8 H 0.033 0.967 9 C -0.143 4.143 10 C 0.143 3.857 11 N -0.612 5.612 12 C 0.174 3.826 13 C -0.260 4.260 14 H 0.067 0.933 15 C -0.050 4.050 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.282 1.282 19 H -0.302 1.302 20 H -0.272 1.272 21 N -0.566 5.566 22 C 0.520 3.480 23 O -0.509 6.509 24 C -0.139 4.139 25 C -0.137 4.137 26 C 0.513 3.487 27 O -0.528 6.528 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.404 0.596 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.039 0.961 40 H 0.243 0.757 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -8.021 11.419 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 H 0.131 0.869 4 C 0.293 3.707 5 O -0.459 6.459 6 N -0.337 5.337 7 C 0.017 3.983 8 H 0.052 0.948 9 C -0.202 4.202 10 C 0.017 3.983 11 N -0.334 5.334 12 C 0.029 3.971 13 C -0.390 4.390 14 H 0.085 0.915 15 C -0.246 4.246 16 N -0.575 5.575 17 Si 0.788 3.212 18 H -0.208 1.208 19 H -0.229 1.229 20 H -0.197 1.197 21 N -0.309 5.309 22 C 0.312 3.688 23 O -0.382 6.382 24 C -0.178 4.178 25 C -0.175 4.175 26 C 0.305 3.695 27 O -0.402 6.402 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.240 0.760 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.030 0.970 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.190 -8.364 11.137 17.866 hybrid contribution 1.319 0.934 -0.506 1.693 sum -9.871 -7.430 10.630 16.299 Atomic orbital electron populations 1.22042 0.88671 1.04185 1.05431 1.21242 0.98776 0.97276 0.82949 0.86889 1.20775 0.79824 0.84272 0.85865 1.90613 1.39730 1.28412 1.87156 1.45644 1.52119 1.31177 1.04738 1.21695 0.96342 0.93964 0.86267 0.94840 1.21993 0.99960 0.97021 1.01206 1.21379 0.95924 0.87028 0.94017 1.44101 1.04209 1.13671 1.71422 1.20634 0.92496 0.88480 0.95484 1.19458 0.84243 1.22706 1.12627 0.91531 1.25710 1.01219 1.01581 0.96069 1.70185 1.35696 1.35022 1.16632 0.85381 0.80997 0.78179 0.76596 1.20826 1.22893 1.19729 1.46788 1.47356 1.15182 1.21547 1.21691 0.78850 0.79558 0.88727 1.90700 1.37836 1.54911 1.54749 1.22579 1.02575 0.99565 0.93055 1.22593 1.05712 0.91240 0.97996 1.21971 0.74912 0.88295 0.84345 1.90791 1.52305 1.19332 1.77791 0.91337 0.89143 0.88511 0.75991 0.90378 0.94787 0.90347 0.91665 0.90280 0.97281 0.97012 0.94237 0.94794 0.84817 0.82388 0.84618 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.06 71.98 0.65 -2.89 16 2 C 0.10 3.48 3.12 44.25 0.14 3.62 16 3 H 0.11 4.16 7.41 -2.39 -0.02 4.14 16 4 C 0.51 20.73 6.76 87.66 0.59 21.32 16 5 O -0.58 -27.91 14.49 12.14 0.18 -27.73 16 6 N -0.69 -25.77 4.31 -442.53 -1.91 -27.68 16 7 C 0.12 4.79 2.88 44.99 0.13 4.92 16 8 H 0.03 1.63 7.58 -2.38 -0.02 1.61 16 9 C -0.14 -4.32 9.48 71.98 0.68 -3.64 16 10 C 0.14 5.38 5.33 86.38 0.46 5.84 16 11 N -0.61 -29.38 2.78 -726.92 -2.02 -31.40 16 12 C 0.17 8.04 7.61 127.77 0.97 9.01 16 13 C -0.26 -14.34 9.66 84.03 0.81 -13.53 16 14 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 15 C -0.05 -2.89 5.13 84.86 0.44 -2.45 16 16 N -0.93 -55.97 10.66 21.65 0.23 -55.74 16 17 Si 0.96 46.97 29.57 68.60 2.03 49.00 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 N -0.57 -17.21 2.27 -738.14 -1.68 -18.89 16 22 C 0.52 14.30 6.70 87.99 0.59 14.89 16 23 O -0.51 -17.56 15.13 12.30 0.19 -17.38 16 24 C -0.14 -1.90 7.03 30.46 0.21 -1.68 16 25 C -0.14 -1.88 7.03 30.46 0.21 -1.67 16 26 C 0.51 14.50 8.08 87.99 0.71 15.21 16 27 O -0.53 -19.68 17.23 -2.87 -0.05 -19.73 16 28 H 0.07 1.83 6.62 -2.39 -0.02 1.81 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 1.98 7.56 -2.39 -0.02 1.96 16 31 H 0.40 13.40 6.59 -92.71 -0.61 12.79 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.07 2.38 8.03 -2.38 -0.02 2.36 16 36 H 0.08 2.42 7.86 -2.38 -0.02 2.40 16 37 H 0.01 0.45 6.90 -2.39 -0.02 0.44 16 38 H 0.01 0.58 7.30 -2.39 -0.02 0.57 16 39 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 40 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -85.05 360.61 3.97 -81.08 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.40 Total: 19.51 kcal Atomic # 6 Polarization: 42.34 SS G_CDS: 6.60 Total: 48.95 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -5.37 Total: -133.70 kcal Atomic # 8 Polarization: -65.15 SS G_CDS: 0.31 Total: -64.84 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -85.05 3.97 -81.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.920 kcal (2) G-P(sol) polarization free energy of solvation -85.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds