Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.47052 * 180.02562 * 6 5 4 8 8 C 1.36932 * 119.99827 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00294 * 0.02562 * 8 7 6 10 10 C 1.38818 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99652 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99870 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47193 * 90.00403 * 12 10 8 14 14 H 1.48510 * 109.46934 * 210.00570 * 12 10 8 15 15 H 1.48507 * 109.47430 * 330.00236 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 2 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 2 20 20 N 1.46509 * 109.47002 * 179.97438 * 19 17 16 21 21 C 1.33870 * 122.75722 * 269.70915 * 20 19 17 22 22 O 1.21227 * 125.40234 * 359.97438 * 21 20 19 23 23 C 1.51325 * 109.20173 * 179.84009 * 21 20 19 24 24 C 1.54224 * 103.55338 * 0.38764 * 23 21 20 25 25 C 1.33875 * 122.76362 * 89.99472 * 20 19 17 26 26 O 1.21232 * 125.39871 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 30 30 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 31 31 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 32 32 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 33 33 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 34 34 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 35 35 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 36 36 H 0.96998 * 119.99684 * 0.02562 * 7 6 5 37 37 H 0.96998 * 119.99784 * 179.97438 * 11 10 8 38 38 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 39 39 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 40 40 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 41 41 H 1.08998 * 110.79604 * 241.77663 * 23 21 20 42 42 H 1.09001 * 110.41131 * 118.81335 * 23 21 20 43 43 H 1.09000 * 110.60273 * 241.25533 * 24 23 21 44 44 H 1.09005 * 110.60780 * 118.29433 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 7 5.5348 -1.2311 2.6249 8 6 6.2186 -1.8060 3.6626 9 1 5.6817 -2.3364 4.4351 10 6 7.6021 -1.7080 3.7211 11 7 8.2564 -1.0620 2.7794 12 14 8.5349 -2.4930 5.1364 13 1 8.8973 -3.8875 4.7774 14 1 9.7703 -1.7145 5.4072 15 1 7.6788 -2.5007 6.3498 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8639 1.1598 -2.4102 19 6 2.6607 -0.7259 -3.5845 20 7 2.7145 0.2166 -4.7049 21 6 1.6871 0.4063 -5.5419 22 8 0.6172 -0.1604 -5.4803 23 6 2.0718 1.4426 -6.5753 24 6 3.5184 1.8154 -6.1921 25 6 3.7970 0.9549 -4.9792 26 8 4.8358 0.9373 -4.3544 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2057 32 1 3.9994 -1.0727 0.4261 33 1 3.8531 0.4371 1.3575 34 1 3.6402 -0.8758 3.4507 35 1 3.7865 -2.3852 2.5187 36 1 6.0171 -0.7550 1.9308 37 1 9.2231 -0.9932 2.8205 38 1 2.2491 -1.6318 -1.1525 39 1 3.6591 -1.1180 -3.3909 40 1 1.9895 -1.5478 -3.8336 41 1 1.4208 2.3144 -6.5101 42 1 2.0389 1.0119 -7.5761 43 1 3.5871 2.8728 -5.9364 44 1 4.2052 1.5704 -7.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755524901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -98.785346 kcal Electronic energy + Delta-G solvation = -25638.227464 eV Core-core repulsion = 21783.942356 eV Total energy + Delta-G solvation = -3854.285107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25842 -39.80793 -38.85428 -36.86648 -36.08755 -34.84832 -33.85103 -32.62250 -31.25199 -29.45653 -28.08978 -26.54013 -25.65483 -23.13348 -22.73195 -21.85714 -20.82244 -20.68350 -19.75723 -18.06196 -17.68215 -17.00304 -16.80539 -16.72543 -16.17741 -15.28050 -15.07076 -14.69181 -14.50957 -14.47756 -14.28733 -14.24314 -13.82098 -13.68291 -13.51599 -13.16471 -13.02851 -12.89116 -12.38469 -12.23391 -12.10707 -11.78656 -11.31584 -11.18101 -11.01894 -10.85281 -10.80151 -10.73040 -10.46619 -10.39492 -10.36870 -9.99971 -9.75085 -9.66893 -9.19877 -8.84706 -6.89371 -5.73510 -3.02492 1.21563 1.97055 2.37686 2.40619 3.09239 3.44953 3.49607 3.51873 3.69146 3.83027 4.02861 4.38404 4.48500 4.58885 4.66560 4.76521 4.84854 4.99840 5.02528 5.04322 5.13685 5.17502 5.21513 5.41399 5.54468 5.59563 5.61790 5.77063 5.94107 6.05695 6.10183 6.20285 6.36403 6.41010 6.42088 6.43199 6.87632 6.90890 6.98004 7.27195 7.44333 7.71773 8.00311 8.45356 9.55999 10.15189 10.49472 11.49422 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002693 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.916697 B =10394.338532 C =11740.909315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.715 5.715 17 C 0.505 3.495 18 O -0.535 6.535 19 C 0.076 3.924 20 N -0.559 5.559 21 C 0.532 3.468 22 O -0.484 6.484 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.528 3.472 26 O -0.471 6.471 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.403 0.597 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.556 3.182 -20.810 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.739 3.261 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.367 5.367 17 C 0.290 3.710 18 O -0.411 6.411 19 C -0.049 4.049 20 N -0.302 5.302 21 C 0.321 3.679 22 O -0.355 6.355 23 C -0.193 4.193 24 C -0.194 4.194 25 C 0.316 3.684 26 O -0.340 6.340 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.238 0.762 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.734 3.627 -20.284 26.545 hybrid contribution 0.878 -0.806 0.738 1.402 sum -15.856 2.821 -19.546 25.326 Atomic orbital electron populations 1.22163 0.95289 1.02094 1.02427 1.21080 0.93670 0.97803 0.83668 0.89323 1.21854 0.96937 1.00796 0.96496 1.21740 0.93563 1.01510 0.99580 1.20641 0.86222 0.96401 0.94167 1.42390 1.00203 1.66157 1.29143 1.19238 0.89455 1.27073 1.01374 0.91226 1.24764 0.96468 1.01225 0.98680 1.69667 1.07210 1.46855 1.34451 0.86181 0.79518 0.78640 0.81805 1.21730 1.21747 1.20776 1.45992 1.66965 1.14195 1.09550 1.20627 0.77911 0.87668 0.84825 1.90707 1.49889 1.15714 1.84802 1.21602 1.06056 0.92395 0.84861 1.46310 1.16722 1.39459 1.27678 1.20830 0.82596 0.82406 0.82027 1.90777 1.22273 1.49841 1.72605 1.22451 0.97238 0.99765 0.99887 1.22454 0.97374 1.02494 0.97037 1.20865 0.82196 0.79481 0.85819 1.90851 1.26003 1.63835 1.53353 0.92410 0.92418 0.91445 0.90171 0.91313 0.92062 0.91954 0.96522 0.96571 0.78305 0.93502 0.76233 0.85500 0.85845 0.85957 0.86098 0.85912 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.49 37.16 0.35 -1.31 16 2 C 0.14 1.66 2.58 -67.93 -0.17 1.49 16 3 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 4 C -0.12 -1.46 4.75 -26.73 -0.13 -1.58 16 5 C -0.13 -2.03 5.22 -26.73 -0.14 -2.17 16 6 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 7 N -0.73 -19.32 5.60 -59.91 -0.34 -19.66 16 8 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 12 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 N -0.71 -7.84 4.53 -53.81 -0.24 -8.08 16 17 C 0.51 6.44 7.87 -10.99 -0.09 6.35 16 18 O -0.53 -8.75 16.09 5.55 0.09 -8.66 16 19 C 0.08 0.75 6.04 -5.19 -0.03 0.72 16 20 N -0.56 -5.64 2.04 -116.62 -0.24 -5.88 16 21 C 0.53 4.95 8.08 -11.08 -0.09 4.86 16 22 O -0.48 -5.99 17.47 5.60 0.10 -5.89 16 23 C -0.15 -0.69 7.03 -26.94 -0.19 -0.88 16 24 C -0.15 -0.76 7.03 -26.95 -0.19 -0.95 16 25 C 0.53 5.42 8.08 -11.09 -0.09 5.33 16 26 O -0.47 -6.82 17.48 5.60 0.10 -6.72 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 39 H 0.13 1.13 7.83 -51.93 -0.41 0.72 16 40 H 0.12 0.93 7.82 -51.93 -0.41 0.53 16 41 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -39.00 376.13 -7.09 -46.09 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.89 Total: 6.32 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.04 Total: 7.32 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.09 Total: -61.93 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.29 Total: -21.27 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.00 -7.09 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755524901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.696 kcal (2) G-P(sol) polarization free energy of solvation -38.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds