Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.47052 * 180.02562 * 6 5 4 8 8 C 1.36932 * 119.99827 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00294 * 0.02562 * 8 7 6 10 10 C 1.38818 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99652 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99870 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47193 * 90.00403 * 12 10 8 14 14 H 1.48510 * 109.46934 * 210.00570 * 12 10 8 15 15 H 1.48507 * 109.47430 * 330.00236 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 2 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 2 20 20 N 1.46509 * 109.47002 * 179.97438 * 19 17 16 21 21 C 1.33870 * 122.75722 * 269.70915 * 20 19 17 22 22 O 1.21227 * 125.40234 * 359.97438 * 21 20 19 23 23 C 1.51325 * 109.20173 * 179.84009 * 21 20 19 24 24 C 1.54224 * 103.55338 * 0.38764 * 23 21 20 25 25 C 1.33875 * 122.76362 * 89.99472 * 20 19 17 26 26 O 1.21232 * 125.39871 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 30 30 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 31 31 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 32 32 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 33 33 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 34 34 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 35 35 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 36 36 H 0.96998 * 119.99684 * 0.02562 * 7 6 5 37 37 H 0.96998 * 119.99784 * 179.97438 * 11 10 8 38 38 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 39 39 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 40 40 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 41 41 H 1.08998 * 110.79604 * 241.77663 * 23 21 20 42 42 H 1.09001 * 110.41131 * 118.81335 * 23 21 20 43 43 H 1.09000 * 110.60273 * 241.25533 * 24 23 21 44 44 H 1.09005 * 110.60780 * 118.29433 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 7 5.5348 -1.2311 2.6249 8 6 6.2186 -1.8060 3.6626 9 1 5.6817 -2.3364 4.4351 10 6 7.6021 -1.7080 3.7211 11 7 8.2564 -1.0620 2.7794 12 14 8.5349 -2.4930 5.1364 13 1 8.8973 -3.8875 4.7774 14 1 9.7703 -1.7145 5.4072 15 1 7.6788 -2.5007 6.3498 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8639 1.1598 -2.4102 19 6 2.6607 -0.7259 -3.5845 20 7 2.7145 0.2166 -4.7049 21 6 1.6871 0.4063 -5.5419 22 8 0.6172 -0.1604 -5.4803 23 6 2.0718 1.4426 -6.5753 24 6 3.5184 1.8154 -6.1921 25 6 3.7970 0.9549 -4.9792 26 8 4.8358 0.9373 -4.3544 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2057 32 1 3.9994 -1.0727 0.4261 33 1 3.8531 0.4371 1.3575 34 1 3.6402 -0.8758 3.4507 35 1 3.7865 -2.3852 2.5187 36 1 6.0171 -0.7550 1.9308 37 1 9.2231 -0.9932 2.8205 38 1 2.2491 -1.6318 -1.1525 39 1 3.6591 -1.1180 -3.3909 40 1 1.9895 -1.5478 -3.8336 41 1 1.4208 2.3144 -6.5101 42 1 2.0389 1.0119 -7.5761 43 1 3.5871 2.8728 -5.9364 44 1 4.2052 1.5704 -7.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755524901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -128.109508 kcal Electronic energy + Delta-G solvation = -25639.499055 eV Core-core repulsion = 21783.942356 eV Total energy + Delta-G solvation = -3855.556698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.99266 -40.80679 -39.69467 -38.05995 -36.95335 -36.53920 -34.53366 -34.17948 -32.66252 -30.98396 -28.85324 -27.25717 -27.13265 -24.87446 -23.35277 -22.98022 -22.29751 -21.69099 -20.52988 -19.16030 -18.90397 -18.49080 -17.57201 -17.53237 -17.11874 -16.63918 -16.27234 -15.98685 -15.64052 -15.41984 -15.34793 -15.31300 -15.02492 -14.93949 -14.56030 -14.35115 -14.02992 -13.57956 -13.46329 -13.39149 -13.17452 -13.06129 -12.78665 -12.43399 -12.27837 -12.12448 -12.11459 -11.89966 -11.83345 -11.76274 -11.62015 -11.54399 -11.14694 -10.95336 -10.70596 -10.20352 -9.03247 -7.97344 -5.27380 0.47785 1.25259 1.40931 1.45431 1.48074 1.56632 1.67805 2.22399 2.54331 3.19170 3.24497 3.36166 3.51611 3.61938 3.65685 3.91739 3.96712 4.05837 4.07822 4.18472 4.24380 4.25358 4.34994 4.54131 4.63236 4.74648 4.77974 4.82480 4.87296 4.89185 4.90808 4.94848 5.07207 5.25508 5.31698 5.39576 5.47908 5.49349 5.72423 6.24794 6.26715 6.36184 6.68343 7.05943 7.29984 8.06983 8.29010 9.26543 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002693 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.916697 B =10394.338532 C =11740.909315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.060 0.940 4 C -0.108 4.108 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.248 4.248 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.978 3.022 13 H -0.284 1.284 14 H -0.295 1.295 15 H -0.268 1.268 16 N -0.707 5.707 17 C 0.498 3.502 18 O -0.577 6.577 19 C 0.072 3.928 20 N -0.567 5.567 21 C 0.524 3.476 22 O -0.520 6.520 23 C -0.139 4.139 24 C -0.141 4.141 25 C 0.518 3.482 26 O -0.525 6.525 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.371 0.629 37 H 0.251 0.749 38 H 0.416 0.584 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 2.454 -21.444 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.380 4.380 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.192 1.192 16 N -0.360 5.360 17 C 0.284 3.716 18 O -0.457 6.457 19 C -0.053 4.053 20 N -0.309 5.309 21 C 0.316 3.684 22 O -0.394 6.394 23 C -0.178 4.178 24 C -0.180 4.180 25 C 0.310 3.690 26 O -0.399 6.399 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.202 0.798 37 H 0.060 0.940 38 H 0.253 0.747 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.089 2.862 -20.914 27.800 hybrid contribution 1.211 -0.591 0.951 1.649 sum -16.878 2.271 -19.963 26.240 Atomic orbital electron populations 1.22075 0.93624 1.03160 1.02181 1.20991 0.94847 0.96402 0.83807 0.92139 1.21749 0.93438 1.02414 0.96990 1.21599 0.96563 0.99553 0.97442 1.20854 0.83133 0.97476 0.96092 1.42677 1.02605 1.65859 1.28303 1.19687 0.90044 1.26372 1.01864 0.90387 1.25667 0.97570 1.02412 1.01545 1.69840 1.07109 1.48764 1.36617 0.85077 0.77807 0.77511 0.78988 1.21111 1.22208 1.19227 1.45973 1.66192 1.14779 1.09012 1.21160 0.77244 0.87320 0.85878 1.90674 1.51916 1.17544 1.85578 1.21704 1.06656 0.92871 0.84086 1.46599 1.17268 1.39384 1.27617 1.21734 0.81678 0.82582 0.82390 1.90753 1.23546 1.51465 1.73677 1.22594 0.96693 0.98749 0.99725 1.22599 0.98301 1.01936 0.95167 1.21872 0.81207 0.79293 0.86651 1.90817 1.27967 1.65604 1.55537 0.94214 0.90620 0.90149 0.88971 0.88964 0.92450 0.93925 0.96206 0.95401 0.79806 0.93981 0.74687 0.84995 0.83649 0.84224 0.82616 0.84550 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.49 71.98 0.68 -2.24 16 2 C 0.14 3.30 2.58 44.99 0.12 3.41 16 3 H 0.06 1.76 7.57 -2.39 -0.02 1.74 16 4 C -0.11 -2.38 4.75 30.60 0.15 -2.23 16 5 C -0.11 -3.63 5.22 30.60 0.16 -3.47 16 6 C 0.15 6.01 6.26 86.38 0.54 6.55 16 7 N -0.75 -39.89 5.60 -343.44 -1.92 -41.81 16 8 C -0.25 -14.27 9.99 84.04 0.84 -13.43 16 9 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 10 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 11 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 12 Si 0.98 46.99 29.55 68.60 2.03 49.01 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 N -0.71 -15.36 4.53 -442.54 -2.00 -17.37 16 17 C 0.50 13.05 7.87 87.66 0.69 13.74 16 18 O -0.58 -19.70 16.09 -3.04 -0.05 -19.75 16 19 C 0.07 1.44 6.04 85.63 0.52 1.96 16 20 N -0.57 -11.41 2.04 -760.71 -1.55 -12.96 16 21 C 0.52 9.26 8.08 88.00 0.71 9.97 16 22 O -0.52 -12.67 17.47 -2.86 -0.05 -12.72 16 23 C -0.14 -0.84 7.03 30.46 0.21 -0.63 16 24 C -0.14 -1.06 7.03 30.46 0.21 -0.85 16 25 C 0.52 10.58 8.08 87.99 0.71 11.29 16 26 O -0.53 -15.87 17.48 -2.88 -0.05 -15.92 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.86 7.75 -2.39 -0.02 1.84 16 33 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.37 21.19 7.67 -92.71 -0.71 20.48 16 37 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.42 6.72 8.60 -92.71 -0.80 5.92 16 39 H 0.13 2.46 7.83 -2.39 -0.02 2.44 16 40 H 0.15 2.16 7.82 -2.39 -0.02 2.14 16 41 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.15 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -87.84 376.13 2.20 -85.64 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.49 Total: 27.41 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.01 Total: 19.82 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.20 Total: -133.49 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.15 Total: -48.39 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -87.84 2.20 -85.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755524901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.471 kcal (2) G-P(sol) polarization free energy of solvation -87.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds