Wall clock time and date at job start Tue Mar 31 2020 04:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47175 * 240.00107 * 3 2 1 5 5 H 1.48494 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46855 * 120.00258 * 3 2 1 7 7 C 1.38812 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99811 * 162.37141 * 7 2 1 9 9 N 1.36929 * 120.00059 * 342.63336 * 7 2 1 10 10 C 1.46929 * 120.62981 * 152.04740 * 9 7 2 11 11 C 1.53625 * 108.54104 * 126.37345 * 10 9 7 12 12 C 1.53037 * 109.24245 * 54.85531 * 11 10 9 13 13 N 1.46508 * 109.45898 * 178.49022 * 12 11 10 14 14 C 1.34778 * 119.99860 * 275.06494 * 13 12 11 15 15 O 1.21583 * 120.00387 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99491 * 179.97438 * 14 13 12 17 17 C 1.46510 * 119.99584 * 180.02562 * 16 14 13 18 18 H 1.08992 * 108.96265 * 326.20156 * 17 16 14 19 19 C 1.54212 * 108.97597 * 207.48138 * 17 16 14 20 20 C 1.50619 * 109.06293 * 161.82518 * 19 17 16 21 21 C 1.53818 * 112.46658 * 90.32974 * 20 19 17 22 22 O 1.43989 * 113.41255 * 317.88367 * 21 20 19 23 23 C 1.40328 * 116.58441 * 317.89648 * 22 21 20 24 24 C 1.46278 * 108.97704 * 85.00376 * 17 16 14 25 25 C 1.53041 * 109.53978 * 298.51067 * 12 11 10 26 26 C 1.46927 * 120.63049 * 332.33082 * 9 7 2 27 27 H 0.97008 * 119.99978 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.59030 * 246.20246 * 10 9 7 29 29 H 1.08998 * 109.58614 * 6.63493 * 10 9 7 30 30 H 1.09002 * 109.63217 * 294.86675 * 11 10 9 31 31 H 1.08997 * 109.43220 * 174.72594 * 11 10 9 32 32 H 1.09003 * 109.44982 * 58.52972 * 12 11 10 33 33 H 0.96999 * 120.00166 * 95.07109 * 13 12 11 34 34 H 0.96999 * 120.00535 * 0.02562 * 16 14 13 35 35 H 1.08996 * 109.53525 * 281.70382 * 19 17 16 36 36 H 1.09003 * 109.53851 * 41.94742 * 19 17 16 37 37 H 1.08997 * 108.88340 * 329.55838 * 20 19 17 38 38 H 1.09001 * 108.80488 * 211.04541 * 20 19 17 39 39 H 1.08997 * 108.69728 * 196.87002 * 21 20 19 40 40 H 1.09001 * 108.69654 * 78.90014 * 21 20 19 41 41 H 1.09006 * 109.59388 * 335.27291 * 23 22 21 42 42 H 1.08999 * 109.72615 * 214.88267 * 23 22 21 43 43 H 1.08999 * 108.93992 * 302.76070 * 24 17 16 44 44 H 1.09007 * 108.93653 * 61.36238 * 24 17 16 45 45 H 1.08996 * 109.49520 * 301.41159 * 25 12 11 46 46 H 1.09003 * 109.52282 * 181.33372 * 25 12 11 47 47 H 1.09000 * 109.58736 * 353.37401 * 26 9 7 48 48 H 1.09010 * 109.58624 * 113.65548 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0521 -1.2240 -0.2838 9 7 1.3723 -2.3611 0.3529 10 6 1.8155 -3.6540 -0.1865 11 6 2.0739 -4.6104 0.9877 12 6 0.8183 -4.6904 1.8588 13 7 1.0473 -5.6291 2.9601 14 6 0.8466 -6.9487 2.7734 15 8 0.4761 -7.3602 1.6910 16 7 1.0578 -7.8123 3.7864 17 6 0.8403 -9.2468 3.5833 18 1 0.0133 -9.3845 2.8869 19 6 0.4699 -9.8939 4.9332 20 6 -0.1787 -11.2289 4.6773 21 6 0.8415 -12.3794 4.6339 22 8 2.0443 -12.0506 3.9140 23 6 1.8841 -11.3387 2.7153 24 6 2.0498 -9.8346 3.0077 25 6 0.5005 -3.3054 2.4272 26 6 0.2278 -2.3348 1.2738 27 1 -0.4850 0.8401 0.0004 28 1 1.0402 -4.0655 -0.8326 29 1 2.7343 -3.5164 -0.7566 30 1 2.9078 -4.2407 1.5844 31 1 2.3131 -5.6015 0.6022 32 1 -0.0208 -5.0365 1.2553 33 1 1.3432 -5.3009 3.8236 34 1 1.3538 -7.4841 4.6498 35 1 1.3715 -10.0348 5.5294 36 1 -0.2254 -9.2474 5.4688 37 1 -0.7053 -11.1883 3.7239 38 1 -0.9000 -11.4269 5.4702 39 1 0.3749 -13.2423 4.1589 40 1 1.1084 -12.6484 5.6559 41 1 0.8895 -11.5248 2.3098 42 1 2.6379 -11.6564 1.9951 43 1 2.2864 -9.3175 2.0778 44 1 2.8758 -9.6989 3.7059 45 1 1.3492 -2.9481 3.0104 46 1 -0.3801 -3.3673 3.0666 47 1 0.0985 -1.3266 1.6674 48 1 -0.6750 -2.6386 0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611446708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:42 Heat of formation + Delta-G solvation = -61.760530 kcal Electronic energy + Delta-G solvation = -26633.563349 eV Core-core repulsion = 22916.716853 eV Total energy + Delta-G solvation = -3716.846496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.48225 -39.29119 -37.50900 -35.89601 -34.30442 -33.30872 -32.39955 -31.45439 -30.01564 -29.20094 -26.96463 -25.72312 -24.73995 -22.33957 -22.04382 -21.20393 -20.95420 -20.43731 -19.40171 -18.09879 -17.32213 -16.78726 -16.53499 -15.91585 -15.57737 -15.08933 -14.81128 -14.60918 -14.26484 -13.93704 -13.83103 -13.64164 -13.50406 -13.13946 -12.94765 -12.66241 -12.61913 -12.32828 -11.82147 -11.74850 -11.42355 -11.21730 -11.09845 -10.97086 -10.81886 -10.74712 -10.69883 -10.47405 -10.26417 -10.04218 -10.01603 -9.84211 -9.71687 -9.51177 -9.13150 -8.57509 -8.41271 -6.67477 -5.78251 -3.19782 2.79244 3.39143 3.40320 3.44735 3.45995 3.50981 4.21080 4.31696 4.42031 4.50743 4.64904 4.67244 4.93113 4.95045 5.17977 5.20442 5.25398 5.35864 5.36998 5.43888 5.50266 5.53197 5.59083 5.64834 5.76280 5.81590 5.88408 5.92910 6.08889 6.11705 6.30725 6.39264 6.50525 6.53324 6.60821 6.64069 6.83012 6.93887 7.01578 7.05233 7.15831 7.34026 7.63655 7.80292 8.18975 8.45771 8.79557 9.22094 9.85546 10.42690 11.30594 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.042688 B = 0.002363 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.769915 B =11847.606246 C =12094.089524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.702 3.298 15 O -0.592 6.592 16 N -0.751 5.751 17 C 0.168 3.832 18 H 0.083 0.917 19 C -0.124 4.124 20 C -0.153 4.153 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.072 3.928 24 C -0.164 4.164 25 C -0.146 4.146 26 C 0.174 3.826 27 H 0.254 0.746 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.393 0.607 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -21.863 12.875 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.406 5.406 17 C 0.063 3.937 18 H 0.101 0.899 19 C -0.163 4.163 20 C -0.191 4.191 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.005 4.005 24 C -0.203 4.203 25 C -0.186 4.186 26 C 0.047 3.953 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.223 0.777 34 H 0.226 0.774 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.495 -22.114 11.885 25.110 hybrid contribution 0.419 1.316 0.758 1.575 sum 0.913 -20.797 12.643 24.356 Atomic orbital electron populations 1.70021 1.05245 1.25620 1.53938 1.25045 0.95287 0.98424 1.00989 0.86361 0.78896 0.83343 0.78120 1.20884 1.21664 1.21085 1.19159 0.92775 0.84844 1.41362 0.91666 1.44111 1.35861 1.01594 1.49995 1.20968 0.97824 0.86517 0.92647 1.22459 0.97241 0.99439 0.98785 1.20902 0.98293 0.87681 0.86620 1.45566 1.72745 1.04978 1.16006 1.16044 0.78375 0.81298 0.84134 1.90907 1.53759 1.77679 1.24659 1.45336 1.74638 1.06551 1.14116 1.19808 0.98306 0.78796 0.96792 0.89921 1.21601 1.01668 0.96055 0.96934 1.21855 0.98926 0.94959 1.03382 1.22951 0.85828 0.95685 0.96951 1.87467 1.31070 1.75240 1.36629 1.22243 1.01676 0.90134 0.86496 1.21577 0.99145 0.96711 1.02888 1.22533 1.00433 0.94746 1.00842 1.20747 0.88870 0.98024 0.87611 0.93566 0.96134 0.92615 0.92489 0.92789 0.90145 0.77682 0.77393 0.90648 0.90827 0.91266 0.90244 0.93122 0.89518 0.92765 0.89399 0.90240 0.90997 0.92260 0.92826 0.89016 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.19 55.49 0.62 -25.55 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.95 2.99 -172.05 -0.51 -15.46 16 10 C 0.15 3.23 6.54 -3.48 -0.02 3.21 16 11 C -0.14 -2.60 5.67 -26.39 -0.15 -2.75 16 12 C 0.17 3.01 2.41 -67.89 -0.16 2.84 16 13 N -0.74 -10.59 5.08 -58.63 -0.30 -10.89 16 14 C 0.70 10.53 8.40 -86.92 -0.73 9.80 16 15 O -0.59 -11.36 15.52 5.29 0.08 -11.27 16 16 N -0.75 -8.07 5.00 -61.22 -0.31 -8.37 16 17 C 0.17 1.67 2.04 -70.49 -0.14 1.52 16 18 H 0.08 1.00 6.96 -51.93 -0.36 0.63 16 19 C -0.12 -0.89 5.08 -27.29 -0.14 -1.03 16 20 C -0.15 -0.95 5.32 -27.50 -0.15 -1.09 16 21 C 0.06 0.41 6.67 37.58 0.25 0.66 16 22 O -0.39 -3.52 10.17 -33.70 -0.34 -3.87 16 23 C 0.07 0.64 6.38 37.74 0.24 0.88 16 24 C -0.16 -1.65 4.94 -29.34 -0.14 -1.79 16 25 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 26 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 33 H 0.39 4.46 8.62 -40.82 -0.35 4.11 16 34 H 0.39 3.15 8.63 -40.82 -0.35 2.80 16 35 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.47 6.83 -51.93 -0.35 0.11 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.44 6.98 -51.93 -0.36 0.08 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 44 H 0.07 0.72 8.13 -51.92 -0.42 0.30 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 48 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -32.34 368.87 -10.12 -42.46 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.34 Total: 4.44 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.55 Total: 6.37 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.50 Total: -60.28 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.26 Total: -15.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.34 -10.12 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611446708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.300 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds