Wall clock time and date at job start Tue Mar 31 2020 04:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47175 * 240.00107 * 3 2 1 5 5 H 1.48494 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46855 * 120.00258 * 3 2 1 7 7 C 1.38812 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99811 * 162.37141 * 7 2 1 9 9 N 1.36929 * 120.00059 * 342.63336 * 7 2 1 10 10 C 1.46929 * 120.62981 * 152.04740 * 9 7 2 11 11 C 1.53625 * 108.54104 * 126.37345 * 10 9 7 12 12 C 1.53037 * 109.24245 * 54.85531 * 11 10 9 13 13 N 1.46508 * 109.45898 * 178.49022 * 12 11 10 14 14 C 1.34778 * 119.99860 * 275.06494 * 13 12 11 15 15 O 1.21583 * 120.00387 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99491 * 179.97438 * 14 13 12 17 17 C 1.46510 * 119.99584 * 180.02562 * 16 14 13 18 18 H 1.08992 * 108.96265 * 326.20156 * 17 16 14 19 19 C 1.54212 * 108.97597 * 207.48138 * 17 16 14 20 20 C 1.50619 * 109.06293 * 161.82518 * 19 17 16 21 21 C 1.53818 * 112.46658 * 90.32974 * 20 19 17 22 22 O 1.43989 * 113.41255 * 317.88367 * 21 20 19 23 23 C 1.40328 * 116.58441 * 317.89648 * 22 21 20 24 24 C 1.46278 * 108.97704 * 85.00376 * 17 16 14 25 25 C 1.53041 * 109.53978 * 298.51067 * 12 11 10 26 26 C 1.46927 * 120.63049 * 332.33082 * 9 7 2 27 27 H 0.97008 * 119.99978 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.59030 * 246.20246 * 10 9 7 29 29 H 1.08998 * 109.58614 * 6.63493 * 10 9 7 30 30 H 1.09002 * 109.63217 * 294.86675 * 11 10 9 31 31 H 1.08997 * 109.43220 * 174.72594 * 11 10 9 32 32 H 1.09003 * 109.44982 * 58.52972 * 12 11 10 33 33 H 0.96999 * 120.00166 * 95.07109 * 13 12 11 34 34 H 0.96999 * 120.00535 * 0.02562 * 16 14 13 35 35 H 1.08996 * 109.53525 * 281.70382 * 19 17 16 36 36 H 1.09003 * 109.53851 * 41.94742 * 19 17 16 37 37 H 1.08997 * 108.88340 * 329.55838 * 20 19 17 38 38 H 1.09001 * 108.80488 * 211.04541 * 20 19 17 39 39 H 1.08997 * 108.69728 * 196.87002 * 21 20 19 40 40 H 1.09001 * 108.69654 * 78.90014 * 21 20 19 41 41 H 1.09006 * 109.59388 * 335.27291 * 23 22 21 42 42 H 1.08999 * 109.72615 * 214.88267 * 23 22 21 43 43 H 1.08999 * 108.93992 * 302.76070 * 24 17 16 44 44 H 1.09007 * 108.93653 * 61.36238 * 24 17 16 45 45 H 1.08996 * 109.49520 * 301.41159 * 25 12 11 46 46 H 1.09003 * 109.52282 * 181.33372 * 25 12 11 47 47 H 1.09000 * 109.58736 * 353.37401 * 26 9 7 48 48 H 1.09010 * 109.58624 * 113.65548 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0521 -1.2240 -0.2838 9 7 1.3723 -2.3611 0.3529 10 6 1.8155 -3.6540 -0.1865 11 6 2.0739 -4.6104 0.9877 12 6 0.8183 -4.6904 1.8588 13 7 1.0473 -5.6291 2.9601 14 6 0.8466 -6.9487 2.7734 15 8 0.4761 -7.3602 1.6910 16 7 1.0578 -7.8123 3.7864 17 6 0.8403 -9.2468 3.5833 18 1 0.0133 -9.3845 2.8869 19 6 0.4699 -9.8939 4.9332 20 6 -0.1787 -11.2289 4.6773 21 6 0.8415 -12.3794 4.6339 22 8 2.0443 -12.0506 3.9140 23 6 1.8841 -11.3387 2.7153 24 6 2.0498 -9.8346 3.0077 25 6 0.5005 -3.3054 2.4272 26 6 0.2278 -2.3348 1.2738 27 1 -0.4850 0.8401 0.0004 28 1 1.0402 -4.0655 -0.8326 29 1 2.7343 -3.5164 -0.7566 30 1 2.9078 -4.2407 1.5844 31 1 2.3131 -5.6015 0.6022 32 1 -0.0208 -5.0365 1.2553 33 1 1.3432 -5.3009 3.8236 34 1 1.3538 -7.4841 4.6498 35 1 1.3715 -10.0348 5.5294 36 1 -0.2254 -9.2474 5.4688 37 1 -0.7053 -11.1883 3.7239 38 1 -0.9000 -11.4269 5.4702 39 1 0.3749 -13.2423 4.1589 40 1 1.1084 -12.6484 5.6559 41 1 0.8895 -11.5248 2.3098 42 1 2.6379 -11.6564 1.9951 43 1 2.2864 -9.3175 2.0778 44 1 2.8758 -9.6989 3.7059 45 1 1.3492 -2.9481 3.0104 46 1 -0.3801 -3.3673 3.0666 47 1 0.0985 -1.3266 1.6674 48 1 -0.6750 -2.6386 0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611446708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:41 Heat of formation + Delta-G solvation = -84.293331 kcal Electronic energy + Delta-G solvation = -26634.540445 eV Core-core repulsion = 22916.716853 eV Total energy + Delta-G solvation = -3717.823592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50533 -40.23264 -39.03434 -36.88923 -35.87876 -34.21289 -33.74878 -32.70335 -31.67322 -30.88058 -27.68982 -26.93311 -26.11200 -24.00330 -23.67840 -22.14840 -21.73125 -21.44744 -21.02414 -19.38317 -18.61630 -18.07595 -17.32530 -17.04669 -16.75876 -16.38224 -15.97466 -15.78946 -15.61293 -15.36310 -15.17955 -14.85527 -14.71680 -14.46143 -14.25445 -14.04443 -13.85689 -13.24141 -13.21276 -13.00396 -12.57188 -12.53666 -12.49328 -12.35947 -12.23680 -12.03626 -11.92616 -11.85871 -11.66709 -11.56508 -11.40448 -11.36326 -11.16668 -10.55354 -10.53616 -10.23856 -9.72232 -8.71774 -7.87679 -5.32996 1.49034 1.50742 1.58112 1.70268 2.20016 2.52363 2.91319 3.23837 3.31847 3.58078 3.66669 3.87960 3.90906 3.96476 4.07430 4.09496 4.20709 4.34140 4.34544 4.46408 4.50299 4.56410 4.64018 4.67263 4.76000 4.81351 4.85358 4.96342 4.98865 5.05479 5.07310 5.09917 5.13731 5.15955 5.26842 5.29071 5.32265 5.46983 5.58794 5.62287 5.64422 5.70513 6.07247 6.38707 6.44408 7.14293 7.16277 7.64215 7.83834 8.36993 9.19268 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.042688 B = 0.002363 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.769915 B =11847.606246 C =12094.089524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.145 3.855 11 C -0.122 4.122 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.636 6.636 16 N -0.732 5.732 17 C 0.167 3.833 18 H 0.059 0.941 19 C -0.115 4.115 20 C -0.151 4.151 21 C 0.056 3.944 22 O -0.400 6.400 23 C 0.076 3.924 24 C -0.157 4.157 25 C -0.126 4.126 26 C 0.178 3.822 27 H 0.251 0.749 28 H 0.007 0.993 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.064 0.936 48 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -22.899 15.311 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.163 4.163 12 C 0.076 3.924 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.518 6.518 16 N -0.388 5.388 17 C 0.062 3.938 18 H 0.078 0.922 19 C -0.153 4.153 20 C -0.189 4.189 21 C -0.020 4.020 22 O -0.319 6.319 23 C -0.002 4.002 24 C -0.196 4.196 25 C -0.166 4.166 26 C 0.052 3.948 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 1.463 -23.188 14.394 27.332 hybrid contribution 0.103 1.550 -0.031 1.553 sum 1.566 -21.639 14.362 26.019 Atomic orbital electron populations 1.70183 1.06697 1.26052 1.55221 1.25824 0.96053 1.01571 1.01121 0.85306 0.77524 0.79009 0.78379 1.20324 1.22038 1.20114 1.19492 0.93082 0.85909 1.40999 0.91487 1.44369 1.36011 1.02095 1.50763 1.21051 0.97272 0.85972 0.93868 1.22246 0.97918 0.98417 0.97700 1.20472 0.96830 0.87899 0.87190 1.45149 1.72732 1.04412 1.15906 1.16188 0.78075 0.81582 0.84248 1.90887 1.55683 1.78400 1.26797 1.45185 1.73291 1.06458 1.13827 1.19932 0.97426 0.78220 0.98237 0.92235 1.21547 1.02315 0.96433 0.94969 1.21855 0.99081 0.94258 1.03744 1.23149 0.85219 0.96044 0.97547 1.87445 1.32659 1.75124 1.36640 1.22181 1.02012 0.89221 0.86785 1.21492 0.99204 0.97443 1.01488 1.22242 1.01911 0.93564 0.98894 1.20581 0.87658 0.97878 0.88720 0.93983 0.97529 0.92444 0.91620 0.92586 0.92766 0.75477 0.75337 0.89868 0.89814 0.92161 0.88103 0.92306 0.87959 0.92505 0.89035 0.93034 0.90701 0.91126 0.90515 0.91722 0.98785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 11.19 21.65 0.24 -55.17 16 2 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 3 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.26 -14.66 9.58 84.03 0.81 -13.85 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -31.15 2.99 -698.25 -2.09 -33.23 16 10 C 0.14 6.42 6.54 86.51 0.57 6.99 16 11 C -0.12 -4.52 5.67 30.82 0.17 -4.34 16 12 C 0.18 6.33 2.41 45.02 0.11 6.43 16 13 N -0.73 -19.48 5.08 -457.67 -2.33 -21.81 16 14 C 0.70 20.23 8.40 179.06 1.50 21.73 16 15 O -0.64 -24.58 15.52 -3.98 -0.06 -24.64 16 16 N -0.73 -14.41 5.00 -465.85 -2.33 -16.73 16 17 C 0.17 3.10 2.04 43.33 0.09 3.19 16 18 H 0.06 1.42 6.96 -2.39 -0.02 1.41 16 19 C -0.11 -1.34 5.08 30.23 0.15 -1.19 16 20 C -0.15 -1.50 5.32 30.10 0.16 -1.34 16 21 C 0.06 0.60 6.67 72.26 0.48 1.08 16 22 O -0.40 -6.61 10.17 -143.50 -1.46 -8.07 16 23 C 0.08 1.27 6.38 72.36 0.46 1.73 16 24 C -0.16 -3.05 4.94 28.90 0.14 -2.90 16 25 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 26 C 0.18 8.58 5.31 86.36 0.46 9.04 16 27 H 0.25 14.39 8.31 -92.70 -0.77 13.61 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 33 H 0.41 8.08 8.62 -92.71 -0.80 7.28 16 34 H 0.41 5.35 8.63 -92.71 -0.80 4.55 16 35 H 0.08 0.89 7.82 -2.39 -0.02 0.87 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.73 6.83 -2.39 -0.02 0.71 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.90 6.98 -2.38 -0.02 0.89 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 44 H 0.07 1.39 8.13 -2.38 -0.02 1.37 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.06 3.47 6.04 -2.39 -0.01 3.45 16 48 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: -1.00 -71.46 368.87 -0.94 -72.40 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.64 Total: 20.78 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 5.69 Total: 19.81 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.50 Total: -126.95 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.52 Total: -32.71 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.46 -0.94 -72.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611446708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.893 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds