Wall clock time and date at job start Tue Mar 31 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48491 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47157 * 300.00404 * 3 2 1 6 6 H 1.48502 * 109.47083 * 60.00228 * 3 2 1 7 7 C 1.38815 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99591 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47075 * 85.00119 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99940 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21279 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 N 1.46899 * 109.46945 * 179.97438 * 17 15 14 19 19 C 1.47011 * 111.00263 * 293.63257 * 18 17 15 20 20 C 1.53101 * 109.25890 * 177.60724 * 19 18 17 21 21 O 1.43020 * 109.25431 * 56.85278 * 20 19 18 22 22 C 1.43011 * 113.73725 * 301.32679 * 21 20 19 23 23 C 1.47023 * 110.99849 * 170.00169 * 18 17 15 24 24 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 25 25 C 1.52997 * 109.46817 * 60.00194 * 24 13 12 26 26 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00553 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47020 * 324.99764 * 10 9 7 29 29 H 1.08996 * 109.46929 * 299.99044 * 11 10 9 30 30 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 34 34 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 35 35 H 1.08995 * 109.47091 * 300.00103 * 17 15 14 36 36 H 1.08999 * 109.47030 * 59.99811 * 17 15 14 37 37 H 1.09002 * 109.50849 * 297.54304 * 19 18 17 38 38 H 1.09006 * 109.50444 * 57.67351 * 19 18 17 39 39 H 1.09001 * 109.50770 * 296.91917 * 20 19 18 40 40 H 1.08998 * 109.54160 * 176.80928 * 20 19 18 41 41 H 1.09001 * 109.51194 * 298.73443 * 22 21 20 42 42 H 1.09007 * 109.53926 * 178.63118 * 22 21 20 43 43 H 1.09007 * 109.50362 * 302.32923 * 23 18 17 44 44 H 1.09003 * 109.50715 * 62.41255 * 23 18 17 45 45 H 1.08993 * 109.47662 * 180.02562 * 24 13 12 46 46 H 1.09002 * 109.47075 * 300.00932 * 24 13 12 47 47 H 1.09002 * 109.47153 * 60.00231 * 25 24 13 48 48 H 1.09001 * 109.47289 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4219 -4.0356 1.4365 12 6 1.1437 -4.1848 2.2639 13 6 0.2665 -5.2802 1.6542 14 7 -0.9578 -5.4225 2.4461 15 6 -1.6289 -6.5913 2.4450 16 8 -1.2196 -7.5250 1.7881 17 6 -2.8880 -6.7380 3.2601 18 7 -3.4257 -8.0945 3.0907 19 6 -3.8833 -8.3113 1.7105 20 6 -4.3792 -9.7523 1.5634 21 8 -5.4132 -9.9953 2.5211 22 6 -5.0019 -9.7941 3.8759 23 6 -4.5124 -8.3536 4.0465 24 6 -0.0975 -4.9013 0.2172 25 6 1.1808 -4.7522 -0.6102 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.9688 -3.5506 -0.5900 29 1 3.0470 -3.2554 1.8707 30 1 2.9666 -4.9798 1.4364 31 1 0.5987 -3.2408 2.2639 32 1 1.4030 -4.4551 3.2875 33 1 0.8114 -6.2241 1.6541 34 1 -1.2854 -4.6756 2.9713 35 1 -2.6619 -6.5652 4.3123 36 1 -3.6260 -6.0102 2.9228 37 1 -4.6964 -7.6216 1.4840 38 1 -3.0563 -8.1388 1.0216 39 1 -3.5526 -10.4412 1.7374 40 1 -4.7720 -9.9018 0.5577 41 1 -4.1936 -10.4843 4.1173 42 1 -5.8450 -9.9735 4.5433 43 1 -4.1446 -8.2121 5.0628 44 1 -5.3352 -7.6641 3.8578 45 1 -0.7228 -5.6814 -0.2170 46 1 -0.6424 -3.9573 0.2173 47 1 1.7258 -5.6961 -0.6102 48 1 0.9216 -4.4818 -1.6338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026479230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:20 Heat of formation + Delta-G solvation = -69.655552 kcal Electronic energy + Delta-G solvation = -26728.507591 eV Core-core repulsion = 23011.318741 eV Total energy + Delta-G solvation = -3717.188850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.31634 -39.32986 -37.99145 -35.69265 -34.57581 -32.85547 -31.39679 -30.63564 -30.27258 -29.32442 -27.53980 -25.11943 -24.25148 -23.59218 -22.21803 -21.63043 -20.66557 -20.25425 -18.58422 -17.25547 -17.05889 -16.90319 -16.30480 -15.91635 -15.69136 -15.29863 -15.02172 -14.59691 -14.46928 -14.36009 -13.99444 -13.79976 -13.52454 -13.31606 -12.74290 -12.71750 -12.35668 -12.23936 -12.02050 -11.71507 -11.66250 -11.61888 -11.51785 -10.92611 -10.83347 -10.78212 -10.64312 -10.37294 -10.19594 -10.07448 -10.06228 -9.78994 -9.53133 -9.42783 -8.92817 -8.77259 -8.62284 -6.95156 -5.78721 -3.05921 2.69609 3.00956 3.40853 3.47391 3.48943 3.58691 3.73284 4.56900 4.58547 4.65148 4.73826 4.87321 4.94069 4.99176 5.11062 5.14880 5.17730 5.24551 5.28821 5.41921 5.47261 5.50882 5.57936 5.69416 5.72204 5.73854 5.77758 5.82167 5.98518 6.05781 6.11405 6.22805 6.40372 6.46415 6.54543 6.61507 6.65040 6.69630 6.74817 6.89564 6.91045 6.98393 7.06946 7.64528 7.70052 8.33557 8.40991 9.52284 10.11388 10.46374 11.44197 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002599 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.586272 B =10771.433471 C =11087.466057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.117 4.117 13 C 0.151 3.849 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.528 6.528 17 C 0.034 3.966 18 N -0.519 5.519 19 C 0.012 3.988 20 C 0.066 3.934 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.017 3.983 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.253 0.747 27 H 0.383 0.617 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 -17.058 8.445 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.047 3.953 14 N -0.374 5.374 15 C 0.298 3.702 16 O -0.404 6.404 17 C -0.097 4.097 18 N -0.244 5.244 19 C -0.116 4.116 20 C -0.011 4.011 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.112 4.112 24 C -0.162 4.162 25 C -0.158 4.158 26 H 0.063 0.937 27 H 0.218 0.782 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.392 -17.996 7.995 21.033 hybrid contribution -0.398 2.221 0.300 2.276 sum -7.790 -15.774 8.295 19.450 Atomic orbital electron populations 1.69666 1.05045 1.25392 1.58265 1.24708 0.95490 0.97565 1.03370 0.86155 0.78813 0.84356 0.77115 1.20630 1.21998 1.22018 1.19315 0.91040 0.84227 1.41887 0.91208 1.42500 1.05735 0.99618 1.88444 1.20256 0.94368 0.86505 0.92762 1.22083 0.96007 0.99786 0.99094 1.21662 0.97255 0.98696 0.97875 1.21038 0.84115 0.99536 0.90579 1.46176 1.27469 1.14144 1.49644 1.20364 0.85145 0.82628 0.82016 1.90652 1.67947 1.39026 1.42787 1.22010 0.95412 0.90814 1.01501 1.61869 1.32786 1.24982 1.04781 1.22985 1.00447 0.97445 0.90687 1.22661 0.90750 0.94939 0.92702 1.87967 1.37506 1.89745 1.15546 1.22626 1.00094 0.94589 0.83873 1.22835 0.92970 0.98102 0.97247 1.21809 0.98385 1.01565 0.94410 1.21737 0.96106 0.98632 0.99288 0.93692 0.78161 0.93384 0.91713 0.93593 0.90003 0.93050 0.90156 0.76690 0.87779 0.91673 0.94391 0.87458 0.92001 0.88425 0.92180 0.88465 0.89507 0.93802 0.92691 0.90992 0.92427 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.23 9.93 -15.06 -0.15 -6.38 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.03 4.28 -53.42 -0.23 -17.26 16 10 C 0.17 3.27 3.10 -67.93 -0.21 3.05 16 11 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 12 C -0.12 -1.83 5.23 -26.73 -0.14 -1.97 16 13 C 0.15 2.24 2.45 -67.93 -0.17 2.07 16 14 N -0.72 -9.18 5.08 -53.81 -0.27 -9.45 16 15 C 0.51 6.75 7.50 -10.98 -0.08 6.67 16 16 O -0.53 -8.72 14.01 5.56 0.08 -8.64 16 17 C 0.03 0.34 5.45 -4.97 -0.03 0.31 16 18 N -0.52 -5.61 4.46 -235.74 -1.05 -6.66 16 19 C 0.01 0.14 5.29 -3.71 -0.02 0.12 16 20 C 0.07 0.68 7.01 37.21 0.26 0.94 16 21 O -0.39 -4.23 10.83 -35.23 -0.38 -4.61 16 22 C 0.07 0.55 7.01 37.21 0.26 0.81 16 23 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 24 C -0.12 -2.00 5.32 -26.73 -0.14 -2.14 16 25 C -0.12 -1.98 5.61 -26.73 -0.15 -2.13 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.38 9.60 6.06 -40.82 -0.25 9.36 16 28 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.49 7.60 -51.93 -0.39 1.10 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 34 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 35 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.11 1.41 5.88 -51.93 -0.31 1.11 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.31 6.51 -51.93 -0.34 0.97 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -31.51 371.64 -9.72 -41.22 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.33 Total: 10.85 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.83 Total: -1.39 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.83 Total: -59.98 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.30 Total: -13.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.51 -9.72 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026479230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.434 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds