Wall clock time and date at job start Tue Mar 31 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34425 * 124.34950 * 2 1 4 4 O 1.21280 * 124.94093 * 359.58372 * 3 2 1 5 5 C 1.51278 * 110.11400 * 179.84273 * 3 2 1 6 6 C 1.54783 * 104.12454 * 343.41342 * 5 3 2 7 7 C 1.46763 * 124.35228 * 180.02562 * 2 1 3 8 8 H 1.09006 * 110.24389 * 315.99302 * 7 2 1 9 9 C 1.50696 * 110.24879 * 77.90154 * 7 2 1 10 10 O 1.21275 * 119.99950 * 18.54724 * 9 7 2 11 11 N 1.34779 * 120.00021 * 198.54632 * 9 7 2 12 12 C 1.46498 * 120.00106 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47333 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.50872 * 60.09958 * 13 12 11 15 15 C 1.53297 * 109.51282 * 180.25367 * 13 12 11 16 16 N 1.47145 * 108.38047 * 172.22394 * 15 13 12 17 17 C 1.36942 * 120.97741 * 129.44653 * 16 15 13 18 18 H 1.08008 * 119.99567 * 206.24319 * 17 16 15 19 19 C 1.38810 * 120.00191 * 26.24730 * 17 16 15 20 20 N 1.31610 * 119.99982 * 16.90473 * 19 17 16 21 21 Si 1.86799 * 119.99717 * 196.90162 * 19 17 16 22 22 H 1.48499 * 109.47156 * 90.00267 * 21 19 17 23 23 H 1.48504 * 109.47164 * 210.00001 * 21 19 17 24 24 H 1.48495 * 109.47319 * 330.00032 * 21 19 17 25 25 C 1.47151 * 118.03848 * 309.46453 * 16 15 13 26 26 C 1.53286 * 108.38470 * 50.53690 * 25 16 15 27 27 O 1.42963 * 109.22699 * 307.69612 * 26 25 16 28 28 H 1.08999 * 109.47584 * 359.96814 * 1 2 3 29 29 H 1.09005 * 109.47084 * 119.97333 * 1 2 3 30 30 H 1.09001 * 109.46998 * 239.97048 * 1 2 3 31 31 H 1.09002 * 110.48618 * 102.20050 * 5 3 2 32 32 H 1.09000 * 110.48472 * 224.84463 * 5 3 2 33 33 H 1.09000 * 111.16987 * 266.93043 * 6 5 3 34 34 H 1.08997 * 110.83529 * 143.11586 * 6 5 3 35 35 H 0.97004 * 120.00244 * 0.02562 * 11 9 7 36 36 H 1.09007 * 109.47188 * 300.00512 * 12 11 9 37 37 H 1.09000 * 109.47017 * 59.99927 * 12 11 9 38 38 H 1.08999 * 109.67894 * 291.94561 * 15 13 12 39 39 H 1.08997 * 109.67733 * 52.49986 * 15 13 12 40 40 H 0.97004 * 120.00111 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.67749 * 290.81183 * 25 16 15 42 42 H 1.08998 * 109.71122 * 170.28007 * 25 16 15 43 43 H 1.09001 * 109.51314 * 187.77073 * 26 25 16 44 44 H 1.09003 * 109.51525 * 67.62148 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0072 5 6 3.6897 0.7378 0.0039 6 6 3.7011 -0.7488 0.4347 7 6 2.2931 -1.2116 -0.0005 8 1 1.8986 -1.9384 0.7097 9 6 2.3428 -1.8088 -1.3832 10 8 2.0456 -1.1341 -2.3462 11 7 2.7174 -3.0928 -1.5497 12 6 2.7662 -3.6732 -2.8939 13 6 3.2178 -5.1322 -2.8034 14 1 2.5118 -5.6945 -2.1923 15 6 3.2753 -5.7386 -4.2102 16 7 3.8877 -7.0732 -4.1155 17 6 3.2878 -8.1659 -4.6826 18 1 3.4731 -9.1519 -4.2828 19 6 2.4417 -8.0061 -5.7714 20 7 2.4661 -6.8880 -6.4653 21 14 1.2684 -9.3780 -6.2516 22 1 -0.0216 -9.1986 -5.5383 23 1 1.0333 -9.3379 -7.7174 24 1 1.8608 -10.6883 -5.8811 25 6 5.1634 -7.1992 -3.3930 26 6 5.0139 -6.5217 -2.0262 27 8 4.5174 -5.1938 -2.2107 28 1 -0.3634 1.0276 0.0006 29 1 -0.3633 -0.5134 -0.8903 30 1 -0.3633 -0.5143 0.8897 31 1 4.1148 0.8516 -0.9933 32 1 4.2359 1.3469 0.7242 33 1 3.8274 -0.8452 1.5131 34 1 4.4753 -1.3009 -0.0981 35 1 2.9547 -3.6326 -0.7795 36 1 1.7752 -3.6272 -3.3458 37 1 3.4713 -3.1115 -3.5068 38 1 2.2666 -5.8253 -4.6140 39 1 3.8779 -5.1034 -4.8593 40 1 1.8750 -6.7765 -7.2263 41 1 5.9561 -6.7111 -3.9601 42 1 5.4057 -8.2531 -3.2559 43 1 5.9844 -6.4820 -1.5314 44 1 4.3147 -7.0899 -1.4127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035482321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:45 Heat of formation + Delta-G solvation = -82.171673 kcal Electronic energy + Delta-G solvation = -26481.401560 eV Core-core repulsion = 22627.836876 eV Total energy + Delta-G solvation = -3853.564684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10304 -39.23395 -38.42609 -36.36161 -34.90500 -34.39592 -33.06515 -31.47036 -31.07439 -28.67808 -27.28570 -26.87857 -25.43921 -23.39779 -22.93966 -21.75734 -20.78682 -19.86816 -19.46046 -17.86865 -17.17279 -16.88587 -16.16777 -16.07451 -15.66903 -15.27629 -15.02759 -14.90855 -14.40215 -14.10202 -13.97630 -13.83299 -13.74740 -13.32615 -13.14557 -12.95663 -12.86614 -12.80506 -12.43658 -12.33390 -11.71839 -11.63568 -11.56229 -11.16785 -10.91303 -10.80761 -10.50030 -10.31439 -10.20849 -10.08599 -9.99040 -9.74115 -9.20553 -8.99638 -8.88588 -8.62057 -6.83629 -5.91296 -3.35456 2.33563 2.48185 2.67380 3.23340 3.30244 3.37022 3.38659 4.02913 4.10066 4.14959 4.37612 4.43415 4.61789 4.79165 4.98960 5.09052 5.11062 5.28496 5.29400 5.36101 5.45410 5.48493 5.52208 5.57270 5.58518 5.77394 5.84748 5.92209 6.02602 6.14284 6.16287 6.26772 6.41020 6.53544 6.70554 6.82219 6.98394 7.39530 7.48998 7.64180 7.74170 7.95224 8.17768 8.25975 9.03721 9.66616 10.23174 11.16762 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.002969 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.644566 B = 9427.039365 C =10175.415024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.601 5.601 3 C 0.526 3.474 4 O -0.533 6.533 5 C -0.155 4.155 6 C -0.119 4.119 7 C 0.114 3.886 8 H 0.111 0.889 9 C 0.495 3.505 10 O -0.529 6.529 11 N -0.714 5.714 12 C 0.133 3.867 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.258 4.258 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.108 3.892 26 C 0.051 3.949 27 O -0.390 6.390 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.403 0.597 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 8.061 16.765 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.335 5.335 3 C 0.314 3.686 4 O -0.410 6.410 5 C -0.195 4.195 6 C -0.157 4.157 7 C 0.005 3.995 8 H 0.128 0.872 9 C 0.279 3.721 10 O -0.405 6.405 11 N -0.366 5.366 12 C 0.009 3.991 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.027 4.027 27 O -0.310 6.310 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.047 9.334 15.920 18.485 hybrid contribution -0.680 -1.453 -0.218 1.619 sum 0.367 7.881 15.703 17.573 Atomic orbital electron populations 1.21609 0.77558 1.03974 1.01704 1.47795 1.06528 1.05965 1.73168 1.20833 0.89293 0.84152 0.74305 1.90714 1.78746 1.20931 1.50589 1.22387 0.94810 0.97078 1.05273 1.22615 0.94295 0.95723 1.03089 1.21604 0.93655 0.88909 0.95332 0.87171 1.20875 0.77808 0.82209 0.91241 1.90746 1.47824 1.60432 1.41505 1.45972 1.68141 1.11823 1.10670 1.21449 1.01972 0.92563 0.83126 1.23150 0.84514 0.93928 0.98826 0.92585 1.21305 1.01036 0.85518 0.89579 1.44049 1.19566 1.05047 1.63160 1.19197 1.23550 0.87271 1.08725 0.91292 1.25066 1.01568 0.97484 0.95444 1.70011 1.39250 1.26294 1.18942 0.86242 0.81237 0.81511 0.77487 1.21327 1.21606 1.20378 1.21602 0.89664 0.98756 0.91766 1.23006 0.97939 0.83763 0.98040 1.87763 1.33584 1.27433 1.82209 0.89671 0.91693 0.91937 0.87315 0.87598 0.88526 0.88251 0.76264 0.89983 0.90639 0.88598 0.95053 0.93347 0.95539 0.91953 0.89956 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.13 59.84 0.67 1.58 16 2 N -0.60 -6.72 2.56 -174.03 -0.45 -7.16 16 3 C 0.53 6.75 8.02 -10.86 -0.09 6.66 16 4 O -0.53 -8.82 17.35 5.56 0.10 -8.72 16 5 C -0.16 -1.39 6.86 -26.66 -0.18 -1.58 16 6 C -0.12 -0.80 6.70 -25.02 -0.17 -0.97 16 7 C 0.11 1.01 3.49 -68.17 -0.24 0.77 16 8 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 9 C 0.50 6.26 6.99 -10.99 -0.08 6.18 16 10 O -0.53 -9.14 16.58 5.56 0.09 -9.04 16 11 N -0.71 -8.61 5.45 -60.29 -0.33 -8.94 16 12 C 0.13 2.05 5.37 -4.04 -0.02 2.03 16 13 C 0.06 0.96 2.87 -26.58 -0.08 0.89 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 15 C 0.15 3.43 4.73 -3.54 -0.02 3.41 16 16 N -0.59 -14.24 3.05 -171.84 -0.52 -14.77 16 17 C -0.26 -6.79 9.65 -15.06 -0.15 -6.93 16 18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.30 11.14 55.49 0.62 -24.68 16 21 Si 0.91 20.93 29.59 -169.99 -5.03 15.90 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.11 2.14 6.73 -3.54 -0.02 2.11 16 26 C 0.05 0.81 6.98 37.31 0.26 1.07 16 27 O -0.39 -6.55 10.13 -35.23 -0.36 -6.91 16 28 H 0.08 0.89 7.53 -51.93 -0.39 0.50 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.40 3.88 8.35 -40.82 -0.34 3.53 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 2.40 6.14 -51.93 -0.32 2.08 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -34.37 361.56 -7.54 -41.92 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.92 Total: 1.72 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -0.20 Total: 15.24 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.68 Total: -55.55 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.17 Total: -24.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.37 -7.54 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035482321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.256 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds