Wall clock time and date at job start Tue Mar 31 2020 04:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46532 * 2 1 4 4 C 1.52997 * 109.47121 * 119.99702 * 2 1 3 5 5 N 1.46504 * 109.46663 * 175.00159 * 4 2 1 6 6 C 1.46497 * 119.99964 * 270.00169 * 5 4 2 7 7 C 1.36933 * 119.99873 * 90.00895 * 5 4 2 8 8 H 1.07998 * 120.00066 * 340.43170 * 7 5 4 9 9 C 1.38813 * 120.00148 * 160.16211 * 7 5 4 10 10 N 1.31618 * 120.00074 * 344.51163 * 9 7 5 11 11 Si 1.86800 * 120.00266 * 164.51134 * 9 7 5 12 12 H 1.48505 * 109.46980 * 59.99666 * 11 9 7 13 13 H 1.48491 * 109.47185 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46800 * 300.00130 * 11 9 7 15 15 N 1.46497 * 109.47238 * 240.00479 * 2 1 3 16 16 C 1.34774 * 120.00215 * 84.99716 * 15 2 1 17 17 O 1.21286 * 119.99908 * 359.97438 * 16 15 2 18 18 C 1.50701 * 120.00120 * 180.02562 * 16 15 2 19 19 C 1.52998 * 109.47039 * 179.97438 * 18 16 15 20 20 N 1.46508 * 109.47001 * 180.02562 * 19 18 16 21 21 N 1.40172 * 126.34340 * 269.69150 * 20 19 18 22 22 C 1.29404 * 108.13435 * 179.87538 * 21 20 19 23 23 N 1.37356 * 108.83183 * 0.38240 * 22 21 20 24 24 C 1.46503 * 125.83125 * 179.77111 * 23 22 21 25 25 C 1.34812 * 108.33512 * 359.75170 * 23 22 21 26 26 O 1.21813 * 126.30621 * 179.97438 * 25 23 22 27 27 H 1.09005 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47188 * 299.99245 * 1 2 3 29 29 H 1.08995 * 109.47248 * 59.99796 * 1 2 3 30 30 H 1.09001 * 109.47010 * 55.00577 * 4 2 1 31 31 H 1.09001 * 109.47384 * 295.00126 * 4 2 1 32 32 H 1.09003 * 109.47441 * 264.87133 * 6 5 4 33 33 H 1.08993 * 109.47442 * 24.87091 * 6 5 4 34 34 H 1.08996 * 109.47223 * 144.87171 * 6 5 4 35 35 H 0.96995 * 120.00412 * 180.02562 * 10 9 7 36 36 H 0.97007 * 119.99880 * 264.99831 * 15 2 1 37 37 H 1.08997 * 109.47146 * 299.99853 * 18 16 15 38 38 H 1.09003 * 109.46848 * 59.99994 * 18 16 15 39 39 H 1.08998 * 109.47236 * 299.99271 * 19 18 16 40 40 H 1.08994 * 109.46883 * 60.00499 * 19 18 16 41 41 H 1.08007 * 125.58113 * 180.13275 * 22 21 20 42 42 H 1.08997 * 109.47161 * 269.97309 * 24 23 22 43 43 H 1.08991 * 109.46972 * 29.97883 * 24 23 22 44 44 H 1.09005 * 109.46577 * 149.97385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1905 6 6 4.1259 -1.9917 0.5611 7 6 4.2798 0.1650 1.7240 8 1 3.8625 1.1458 1.8977 9 6 5.6051 -0.0925 2.0468 10 7 6.0322 -1.3345 2.1331 11 14 6.7826 1.3238 2.3586 12 1 6.2874 2.1375 3.4979 13 1 8.1284 0.7864 2.6828 14 1 6.8678 2.1734 1.1436 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8581 1.1586 -2.4116 18 6 2.6489 -0.7286 -3.5878 19 6 2.6998 0.2545 -4.7590 20 7 3.1871 -0.4364 -5.9556 21 7 4.5236 -0.5506 -6.3625 22 6 4.5529 -1.2319 -7.4623 23 7 3.2676 -1.5707 -7.8084 24 6 2.8722 -2.3390 -8.9915 25 6 2.4321 -1.0758 -6.8732 26 8 1.2190 -1.1852 -6.8594 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1582 2.1370 32 1 4.3655 -2.7321 1.3245 33 1 3.4376 -2.4267 -0.1635 34 1 5.0402 -1.6837 0.0541 35 1 6.9581 -1.5144 2.3590 36 1 2.2491 -1.6317 -1.1527 37 1 3.6480 -1.1211 -3.3987 38 1 1.9759 -1.5504 -3.8326 39 1 1.7005 0.6465 -4.9480 40 1 3.3725 1.0765 -4.5144 41 1 5.4421 -1.4883 -8.0191 42 1 2.6887 -1.6579 -9.8224 43 1 3.6705 -3.0313 -9.2585 44 1 1.9631 -2.8995 -8.7735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:43 Heat of formation + Delta-G solvation = 36.616899 kcal Electronic energy + Delta-G solvation = -26167.093901 eV Core-core repulsion = 22350.973027 eV Total energy + Delta-G solvation = -3816.120874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58357 -39.47637 -37.40106 -36.59863 -35.72424 -34.07746 -32.90824 -31.38883 -30.47819 -29.54694 -27.68283 -26.20313 -25.64167 -24.88060 -22.65181 -21.84270 -21.22079 -20.28910 -19.88938 -17.90682 -17.07629 -16.79202 -16.62354 -16.22004 -15.73231 -15.48230 -15.17297 -14.87669 -14.67909 -14.11497 -13.77871 -13.49918 -13.32727 -13.13575 -13.06504 -12.84702 -12.74663 -12.36254 -12.11010 -12.04367 -11.97133 -11.44858 -11.31813 -11.22780 -10.80569 -10.65894 -10.60947 -10.40160 -10.31678 -10.18592 -10.02398 -9.84589 -9.46786 -8.73590 -8.64872 -8.43462 -6.77961 -5.72762 -3.15739 1.56881 1.75766 2.49446 2.88979 3.03001 3.41333 3.46390 3.49511 3.68222 4.20857 4.48359 4.51895 4.73891 4.81279 4.84349 5.07798 5.10983 5.14116 5.32652 5.45409 5.46870 5.53065 5.65060 5.74546 5.80357 5.84144 5.96188 6.05555 6.09604 6.19606 6.33858 6.46579 6.53379 6.59915 6.80452 7.07705 7.31564 7.43469 7.65781 7.81215 7.86834 7.97424 8.37095 8.64848 9.22804 9.86181 10.32830 11.32439 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003288 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.394292 B = 8513.284509 C = 9547.530085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.001 3.999 10 N -0.909 5.909 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.284 1.284 15 N -0.701 5.701 16 C 0.522 3.478 17 O -0.553 6.553 18 C -0.160 4.160 19 C 0.178 3.822 20 N -0.448 5.448 21 N -0.274 5.274 22 C 0.248 3.752 23 N -0.564 5.564 24 C 0.099 3.901 25 C 0.641 3.359 26 O -0.555 6.555 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.043 0.957 35 H 0.252 0.748 36 H 0.397 0.603 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.231 0.769 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -4.659 -20.355 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.024 3.976 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.197 4.197 10 N -0.555 5.555 11 Si 0.733 3.267 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.211 1.211 15 N -0.352 5.352 16 C 0.307 3.693 17 O -0.432 6.432 18 C -0.201 4.201 19 C 0.057 3.943 20 N -0.269 5.269 21 N -0.095 5.095 22 C -0.051 4.051 23 N -0.294 5.294 24 C -0.043 4.043 25 C 0.341 3.659 26 O -0.428 6.428 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.233 0.767 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.247 0.753 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.380 -3.452 -19.535 20.554 hybrid contribution 0.635 -0.252 -0.398 0.791 sum -4.745 -3.704 -19.933 20.822 Atomic orbital electron populations 1.22126 0.96518 1.01288 1.01811 1.21927 0.92127 0.98956 0.86097 0.89704 1.21053 0.85819 0.97547 0.94153 1.43838 0.99094 1.22774 1.66393 1.20809 0.94123 0.88966 0.93747 1.19140 0.92725 0.90514 1.35833 0.91381 1.24916 0.98479 0.96110 1.00158 1.70069 1.15789 1.17063 1.52535 0.86353 0.80325 0.81844 0.78170 1.20966 1.21690 1.21070 1.46017 1.65868 1.13971 1.09316 1.20095 0.77662 0.87144 0.84444 1.90675 1.51219 1.15890 1.85366 1.22021 1.04313 1.00146 0.93664 1.21217 1.01484 0.93113 0.78450 1.49106 1.02974 1.51365 1.23464 1.77083 0.99881 1.20059 1.12474 1.25957 0.89226 0.95731 0.94218 1.45958 1.07335 1.51268 1.24823 1.21802 1.02724 0.95426 0.84315 1.16816 0.85828 0.81823 0.81454 1.91091 1.08637 1.65289 1.77803 0.93078 0.91944 0.92853 0.94139 0.91893 0.95223 0.99024 0.93840 0.93763 0.76698 0.88020 0.88861 0.87905 0.87659 0.75339 0.90967 0.89341 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.08 2.88 -67.93 -0.20 1.88 16 3 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 4 C 0.14 2.78 5.29 -4.04 -0.02 2.76 16 5 N -0.60 -14.47 2.78 -181.12 -0.50 -14.97 16 6 C 0.17 3.92 8.52 59.85 0.51 4.43 16 7 C -0.25 -6.90 9.67 -15.06 -0.15 -7.05 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 9 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 10 N -0.91 -26.28 10.67 55.49 0.59 -25.69 16 11 Si 0.90 22.19 29.58 -169.99 -5.03 17.16 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 N -0.70 -11.83 4.52 -53.81 -0.24 -12.07 16 16 C 0.52 8.93 7.79 -10.99 -0.09 8.84 16 17 O -0.55 -11.12 15.65 5.55 0.09 -11.03 16 18 C -0.16 -2.23 6.02 -27.88 -0.17 -2.40 16 19 C 0.18 2.48 5.68 -4.04 -0.02 2.46 16 20 N -0.45 -5.98 3.63 -65.12 -0.24 -6.22 16 21 N -0.27 -3.17 12.53 29.87 0.37 -2.80 16 22 C 0.25 1.82 12.66 -89.12 -1.13 0.70 16 23 N -0.56 -5.02 3.14 -130.11 -0.41 -5.43 16 24 C 0.10 0.46 11.05 59.85 0.66 1.12 16 25 C 0.64 8.67 8.60 -86.74 -0.75 7.92 16 26 O -0.55 -9.27 17.71 5.09 0.09 -9.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 33 H -0.01 -0.16 5.76 -51.93 -0.30 -0.46 16 34 H 0.04 1.11 7.19 -51.93 -0.37 0.74 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 36 H 0.40 6.19 6.20 -40.82 -0.25 5.93 16 37 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.49 8.06 -51.93 -0.42 1.07 16 40 H 0.11 1.50 8.10 -51.93 -0.42 1.08 16 41 H 0.23 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -36.48 369.96 -7.51 -43.99 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.73 Total: 2.02 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: -1.08 Total: 18.63 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.43 Total: -67.18 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.18 Total: -20.21 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.48 -7.51 -43.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.611 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds