Wall clock time and date at job start Tue Mar 31 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52992 * 109.47179 * 239.99525 * 2 1 3 5 5 N 1.46507 * 109.47222 * 185.00051 * 4 2 1 6 6 C 1.46501 * 119.99669 * 269.72843 * 5 4 2 7 7 C 1.36935 * 119.99934 * 89.99965 * 5 4 2 8 8 H 1.08002 * 120.00067 * 342.28959 * 7 5 4 9 9 C 1.38810 * 119.99865 * 162.29225 * 7 5 4 10 10 N 1.31616 * 120.00219 * 342.49841 * 9 7 5 11 11 Si 1.86798 * 119.99932 * 162.49731 * 9 7 5 12 12 H 1.48497 * 109.47070 * 84.99041 * 11 9 7 13 13 H 1.48504 * 109.47057 * 204.99489 * 11 9 7 14 14 H 1.48497 * 109.47165 * 324.99357 * 11 9 7 15 15 N 1.46497 * 109.46854 * 119.99387 * 2 1 3 16 16 C 1.34775 * 120.00248 * 275.00413 * 15 2 1 17 17 O 1.21284 * 119.99897 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00244 * 180.02562 * 16 15 2 19 19 C 1.52993 * 109.47162 * 179.97438 * 18 16 15 20 20 N 1.46497 * 109.47183 * 180.02562 * 19 18 16 21 21 N 1.40178 * 126.34743 * 269.68812 * 20 19 18 22 22 C 1.29403 * 108.13745 * 179.87629 * 21 20 19 23 23 N 1.37351 * 108.82935 * 0.38155 * 22 21 20 24 24 C 1.46505 * 125.83153 * 179.76863 * 23 22 21 25 25 C 1.34816 * 108.33948 * 359.75568 * 23 22 21 26 26 O 1.21814 * 126.30177 * 179.97438 * 25 23 22 27 27 H 1.08999 * 109.46952 * 60.00502 * 1 2 3 28 28 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47736 * 300.00548 * 1 2 3 30 30 H 1.09008 * 109.47334 * 65.00430 * 4 2 1 31 31 H 1.09001 * 109.47401 * 304.99982 * 4 2 1 32 32 H 1.09000 * 109.46751 * 265.24255 * 6 5 4 33 33 H 1.08993 * 109.47153 * 25.24376 * 6 5 4 34 34 H 1.09001 * 109.46689 * 145.24698 * 6 5 4 35 35 H 0.96996 * 120.00185 * 180.02562 * 10 9 7 36 36 H 0.97005 * 119.99874 * 94.99994 * 15 2 1 37 37 H 1.08996 * 109.46807 * 300.00172 * 18 16 15 38 38 H 1.09003 * 109.46767 * 59.99891 * 18 16 15 39 39 H 1.09004 * 109.47375 * 299.99604 * 19 18 16 40 40 H 1.09000 * 109.47408 * 59.99567 * 19 18 16 41 41 H 1.07996 * 125.57972 * 180.13603 * 22 21 20 42 42 H 1.08998 * 109.47467 * 269.98257 * 24 23 22 43 43 H 1.09008 * 109.46722 * 29.98041 * 24 23 22 44 44 H 1.09000 * 109.47192 * 149.97471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.3343 0.2311 -1.7665 7 6 4.0850 -1.9159 -0.6021 8 1 3.5097 -2.5459 0.0602 9 6 5.4173 -2.2105 -0.8568 10 7 6.0214 -1.6790 -1.8984 11 14 6.3530 -3.3613 0.2788 12 1 6.1110 -4.7675 -0.1326 13 1 7.8058 -3.0645 0.1967 14 1 5.8862 -3.1667 1.6749 15 7 2.0182 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3572 17 8 1.8588 1.1588 2.4114 18 6 2.6497 -0.7283 3.5876 19 6 2.7015 0.2550 4.7586 20 7 3.1909 -0.4352 5.9545 21 7 2.4078 -1.0944 6.9122 22 6 3.1985 -1.5799 7.8142 23 7 4.4931 -1.2552 7.4900 24 6 5.6862 -1.6150 8.2605 25 6 4.4786 -0.5492 6.3416 26 8 5.4491 -0.0972 5.7606 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7517 -0.1584 -2.1370 31 1 1.6054 -1.7199 -1.2950 32 1 4.6121 -0.0397 -2.7852 33 1 3.7768 1.1676 -1.7786 34 1 5.2348 0.3520 -1.1643 35 1 6.9522 -1.8852 -2.0766 36 1 2.2489 -1.6317 1.1528 37 1 1.9775 -1.5506 3.8326 38 1 3.6491 -1.1200 3.3981 39 1 3.3740 1.0771 4.5133 40 1 1.7024 0.6473 4.9482 41 1 2.8905 -2.1441 8.6820 42 1 5.8982 -0.8321 8.9887 43 1 5.5125 -2.5573 8.7802 44 1 6.5354 -1.7233 7.5858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:46 Heat of formation + Delta-G solvation = 35.271582 kcal Electronic energy + Delta-G solvation = -26482.280092 eV Core-core repulsion = 22666.100881 eV Total energy + Delta-G solvation = -3816.179211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50080 -39.37969 -37.29463 -36.54177 -35.64796 -34.03663 -32.82201 -31.42637 -30.38824 -29.43561 -27.59753 -26.18829 -25.61800 -24.81495 -22.56991 -21.82735 -21.17961 -20.20901 -19.77688 -17.84367 -17.06695 -16.79163 -16.33083 -16.11474 -15.64220 -15.56430 -15.12275 -14.86963 -14.57270 -14.05611 -13.77976 -13.40722 -13.29235 -13.03278 -12.95546 -12.76192 -12.70448 -12.27693 -12.12214 -12.00528 -11.92047 -11.60909 -11.16589 -11.05084 -10.87247 -10.78674 -10.40203 -10.31488 -10.29555 -10.23720 -10.02859 -9.85684 -9.38909 -8.64641 -8.53923 -8.41910 -6.80742 -5.75085 -3.15584 1.64500 1.79530 2.61327 2.95771 3.11744 3.35520 3.43890 3.44554 3.79542 4.28273 4.47518 4.52319 4.81378 4.91412 4.93652 5.17711 5.20944 5.23745 5.33627 5.48131 5.52382 5.62216 5.64637 5.78533 5.85392 5.95040 5.97056 6.14006 6.15383 6.21213 6.41161 6.46570 6.47235 6.77350 6.83639 7.13857 7.42045 7.49997 7.65005 7.78322 7.98072 8.11618 8.34093 8.74952 9.20015 9.85393 10.33437 11.30139 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.004349 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.967820 B = 6436.469773 C = 8154.751775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.600 5.600 6 C 0.164 3.836 7 C -0.252 4.252 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.902 5.902 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.281 1.281 15 N -0.692 5.692 16 C 0.523 3.477 17 O -0.561 6.561 18 C -0.162 4.162 19 C 0.180 3.820 20 N -0.449 5.449 21 N -0.280 5.280 22 C 0.248 3.752 23 N -0.564 5.564 24 C 0.099 3.901 25 C 0.640 3.360 26 O -0.546 6.546 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.028 0.972 33 H -0.002 1.002 34 H 0.044 0.956 35 H 0.253 0.747 36 H 0.403 0.597 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 -1.680 18.886 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.322 5.322 6 C 0.019 3.981 7 C -0.382 4.382 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.547 5.547 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.207 1.207 15 N -0.342 5.342 16 C 0.308 3.692 17 O -0.441 6.441 18 C -0.203 4.203 19 C 0.059 3.941 20 N -0.271 5.271 21 N -0.101 5.101 22 C -0.051 4.051 23 N -0.294 5.294 24 C -0.043 4.043 25 C 0.340 3.660 26 O -0.418 6.418 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.023 -0.389 18.013 19.723 hybrid contribution 1.559 -1.361 0.882 2.250 sum -6.463 -1.750 18.895 20.047 Atomic orbital electron populations 1.22119 0.96509 1.01395 1.01658 1.21882 0.92181 0.98352 0.86654 0.90428 1.21050 0.86031 0.98238 0.93383 1.43872 0.98916 1.21304 1.68108 1.20783 0.93048 0.86228 0.98032 1.18973 0.94342 1.04407 1.20437 0.91650 1.24854 0.98289 0.99245 0.97096 1.70096 1.11663 1.47099 1.25839 0.86419 0.79707 0.80435 0.80839 1.21455 1.21529 1.20721 1.45913 1.65107 1.14422 1.08784 1.20074 0.77523 0.87056 0.84575 1.90651 1.51922 1.15926 1.85593 1.22024 1.04518 1.00119 0.93610 1.21200 1.02186 0.92742 0.77974 1.49086 1.04172 1.51270 1.22542 1.76968 1.19936 1.13254 0.99964 1.25887 0.80179 0.99099 0.99922 1.45959 1.08532 1.50826 1.24086 1.21809 0.85344 1.01338 0.95821 1.16851 0.84907 0.82265 0.82007 1.91138 1.36215 1.54774 1.59712 0.92113 0.92923 0.92867 0.92975 0.93067 0.95409 0.98388 0.93719 0.93707 0.76040 0.88595 0.88177 0.87828 0.87975 0.75452 0.90963 0.89400 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.12 2.09 2.88 -67.94 -0.20 1.89 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.14 2.75 5.30 -4.04 -0.02 2.73 16 5 N -0.60 -14.59 2.82 -181.12 -0.51 -15.10 16 6 C 0.16 4.10 8.98 59.85 0.54 4.64 16 7 C -0.25 -6.58 8.79 -15.06 -0.13 -6.71 16 8 H 0.07 1.59 6.40 -52.49 -0.34 1.26 16 9 C 0.00 0.10 5.02 -17.43 -0.09 0.02 16 10 N -0.90 -26.31 10.65 55.49 0.59 -25.71 16 11 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 N -0.69 -12.39 4.49 -53.81 -0.24 -12.63 16 16 C 0.52 9.37 7.79 -10.98 -0.09 9.28 16 17 O -0.56 -11.40 15.64 5.55 0.09 -11.32 16 18 C -0.16 -2.47 6.02 -27.88 -0.17 -2.64 16 19 C 0.18 2.65 5.68 -4.05 -0.02 2.63 16 20 N -0.45 -6.43 3.63 -65.13 -0.24 -6.66 16 21 N -0.28 -3.23 12.53 29.87 0.37 -2.86 16 22 C 0.25 1.94 12.66 -89.13 -1.13 0.81 16 23 N -0.56 -5.76 3.14 -130.10 -0.41 -6.17 16 24 C 0.10 0.61 11.05 59.85 0.66 1.27 16 25 C 0.64 9.83 8.60 -86.73 -0.75 9.09 16 26 O -0.55 -10.64 17.71 5.09 0.09 -10.55 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.95 8.07 -51.92 -0.42 0.53 16 31 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 32 H 0.03 0.74 7.48 -51.93 -0.39 0.35 16 33 H 0.00 -0.06 8.04 -51.93 -0.42 -0.47 16 34 H 0.04 1.23 7.08 -51.93 -0.37 0.86 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.40 7.11 6.58 -40.82 -0.27 6.85 16 37 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 40 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.23 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 44 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.35 370.64 -7.52 -43.87 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.78 Total: 3.66 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: -1.04 Total: 21.08 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.43 Total: -69.14 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.18 Total: -21.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.35 -7.52 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.141 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds