Wall clock time and date at job start Tue Mar 31 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52992 * 109.47179 * 239.99525 * 2 1 3 5 5 N 1.46507 * 109.47222 * 185.00051 * 4 2 1 6 6 C 1.46501 * 119.99669 * 269.72843 * 5 4 2 7 7 C 1.36935 * 119.99934 * 89.99965 * 5 4 2 8 8 H 1.08002 * 120.00067 * 342.28959 * 7 5 4 9 9 C 1.38810 * 119.99865 * 162.29225 * 7 5 4 10 10 N 1.31616 * 120.00219 * 342.49841 * 9 7 5 11 11 Si 1.86798 * 119.99932 * 162.49731 * 9 7 5 12 12 H 1.48497 * 109.47070 * 84.99041 * 11 9 7 13 13 H 1.48504 * 109.47057 * 204.99489 * 11 9 7 14 14 H 1.48497 * 109.47165 * 324.99357 * 11 9 7 15 15 N 1.46497 * 109.46854 * 119.99387 * 2 1 3 16 16 C 1.34775 * 120.00248 * 275.00413 * 15 2 1 17 17 O 1.21284 * 119.99897 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00244 * 180.02562 * 16 15 2 19 19 C 1.52993 * 109.47162 * 179.97438 * 18 16 15 20 20 N 1.46497 * 109.47183 * 180.02562 * 19 18 16 21 21 N 1.40178 * 126.34743 * 269.68812 * 20 19 18 22 22 C 1.29403 * 108.13745 * 179.87629 * 21 20 19 23 23 N 1.37351 * 108.82935 * 0.38155 * 22 21 20 24 24 C 1.46505 * 125.83153 * 179.76863 * 23 22 21 25 25 C 1.34816 * 108.33948 * 359.75568 * 23 22 21 26 26 O 1.21814 * 126.30177 * 179.97438 * 25 23 22 27 27 H 1.08999 * 109.46952 * 60.00502 * 1 2 3 28 28 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47736 * 300.00548 * 1 2 3 30 30 H 1.09008 * 109.47334 * 65.00430 * 4 2 1 31 31 H 1.09001 * 109.47401 * 304.99982 * 4 2 1 32 32 H 1.09000 * 109.46751 * 265.24255 * 6 5 4 33 33 H 1.08993 * 109.47153 * 25.24376 * 6 5 4 34 34 H 1.09001 * 109.46689 * 145.24698 * 6 5 4 35 35 H 0.96996 * 120.00185 * 180.02562 * 10 9 7 36 36 H 0.97005 * 119.99874 * 94.99994 * 15 2 1 37 37 H 1.08996 * 109.46807 * 300.00172 * 18 16 15 38 38 H 1.09003 * 109.46767 * 59.99891 * 18 16 15 39 39 H 1.09004 * 109.47375 * 299.99604 * 19 18 16 40 40 H 1.09000 * 109.47408 * 59.99567 * 19 18 16 41 41 H 1.07996 * 125.57972 * 180.13603 * 22 21 20 42 42 H 1.08998 * 109.47467 * 269.98257 * 24 23 22 43 43 H 1.09008 * 109.46722 * 29.98041 * 24 23 22 44 44 H 1.09000 * 109.47192 * 149.97471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.3343 0.2311 -1.7665 7 6 4.0850 -1.9159 -0.6021 8 1 3.5097 -2.5459 0.0602 9 6 5.4173 -2.2105 -0.8568 10 7 6.0214 -1.6790 -1.8984 11 14 6.3530 -3.3613 0.2788 12 1 6.1110 -4.7675 -0.1326 13 1 7.8058 -3.0645 0.1967 14 1 5.8862 -3.1667 1.6749 15 7 2.0182 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3572 17 8 1.8588 1.1588 2.4114 18 6 2.6497 -0.7283 3.5876 19 6 2.7015 0.2550 4.7586 20 7 3.1909 -0.4352 5.9545 21 7 2.4078 -1.0944 6.9122 22 6 3.1985 -1.5799 7.8142 23 7 4.4931 -1.2552 7.4900 24 6 5.6862 -1.6150 8.2605 25 6 4.4786 -0.5492 6.3416 26 8 5.4491 -0.0972 5.7606 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7517 -0.1584 -2.1370 31 1 1.6054 -1.7199 -1.2950 32 1 4.6121 -0.0397 -2.7852 33 1 3.7768 1.1676 -1.7786 34 1 5.2348 0.3520 -1.1643 35 1 6.9522 -1.8852 -2.0766 36 1 2.2489 -1.6317 1.1528 37 1 1.9775 -1.5506 3.8326 38 1 3.6491 -1.1200 3.3981 39 1 3.3740 1.0771 4.5133 40 1 1.7024 0.6473 4.9482 41 1 2.8905 -2.1441 8.6820 42 1 5.8982 -0.8321 8.9887 43 1 5.5125 -2.5573 8.7802 44 1 6.5354 -1.7233 7.5858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754318407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:45 Heat of formation + Delta-G solvation = 10.436891 kcal Electronic energy + Delta-G solvation = -26483.357005 eV Core-core repulsion = 22666.100881 eV Total energy + Delta-G solvation = -3817.256124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.42047 -40.84166 -38.46322 -38.18533 -36.68632 -35.75094 -33.89091 -33.16468 -31.88271 -30.59911 -28.32445 -28.09162 -27.39448 -25.89711 -23.72545 -23.26640 -22.30603 -21.68502 -21.25629 -19.01446 -18.61811 -17.92985 -17.63509 -17.18458 -17.00576 -16.93449 -16.69691 -16.25257 -15.67265 -15.51392 -15.08196 -14.94510 -14.64664 -14.46360 -14.24238 -13.89523 -13.74184 -13.53036 -13.45285 -13.24744 -13.10436 -12.91022 -12.82816 -12.70075 -12.61679 -12.40147 -12.21364 -12.07998 -11.89993 -11.78938 -11.42314 -11.15078 -10.80281 -10.59782 -9.90302 -9.68745 -8.82344 -7.83500 -5.24288 0.70173 1.08644 1.40076 1.46012 1.50116 1.52809 1.67296 2.17113 2.46282 2.49508 3.31280 3.43811 3.65874 3.69064 3.88852 3.97182 4.09749 4.15841 4.26285 4.33689 4.42772 4.50787 4.52360 4.64125 4.68363 4.76838 4.78679 4.82186 4.89462 4.93679 5.00714 5.08086 5.18235 5.30282 5.44903 5.57773 5.67062 5.69651 5.72805 6.28743 6.61549 6.66287 6.91664 7.12288 7.31929 7.86623 8.31171 9.21256 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.004349 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.967820 B = 6436.469773 C = 8154.751775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.050 0.950 4 C 0.141 3.859 5 N -0.614 5.614 6 C 0.178 3.822 7 C -0.242 4.242 8 H 0.085 0.915 9 C -0.056 4.056 10 N -0.939 5.939 11 Si 0.952 3.048 12 H -0.277 1.277 13 H -0.305 1.305 14 H -0.276 1.276 15 N -0.694 5.694 16 C 0.520 3.480 17 O -0.587 6.587 18 C -0.146 4.146 19 C 0.186 3.814 20 N -0.458 5.458 21 N -0.312 5.312 22 C 0.280 3.720 23 N -0.559 5.559 24 C 0.091 3.909 25 C 0.620 3.380 26 O -0.604 6.604 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.023 0.977 34 H 0.010 0.990 35 H 0.244 0.756 36 H 0.406 0.594 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.294 0.706 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 -3.613 21.513 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.069 0.931 4 C 0.014 3.986 5 N -0.337 5.337 6 C 0.033 3.967 7 C -0.372 4.372 8 H 0.102 0.898 9 C -0.251 4.251 10 N -0.587 5.587 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.232 1.232 14 H -0.202 1.202 15 N -0.343 5.343 16 C 0.306 3.694 17 O -0.469 6.469 18 C -0.187 4.187 19 C 0.064 3.936 20 N -0.277 5.277 21 N -0.133 5.133 22 C -0.017 4.017 23 N -0.286 5.286 24 C -0.049 4.049 25 C 0.318 3.682 26 O -0.481 6.481 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.242 0.758 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.309 0.691 42 H 0.106 0.894 43 H 0.154 0.846 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.352 -2.365 20.696 23.261 hybrid contribution 2.189 -0.759 0.169 2.323 sum -8.163 -3.124 20.865 22.621 Atomic orbital electron populations 1.22000 0.93349 1.02754 1.02320 1.21710 0.94490 0.96400 0.85813 0.93131 1.21263 0.83049 0.99496 0.94754 1.44114 1.01028 1.20606 1.67946 1.20488 0.92432 0.87683 0.96105 1.19443 0.94358 1.04003 1.19389 0.89782 1.25550 0.99572 1.01472 0.98480 1.70248 1.11308 1.49395 1.27708 0.85515 0.77597 0.79323 0.79428 1.20351 1.23186 1.20196 1.45960 1.65034 1.14479 1.08860 1.20460 0.76954 0.86767 0.85209 1.90636 1.53113 1.17113 1.86051 1.21895 1.03643 1.00586 0.92590 1.20968 1.01958 0.92111 0.78558 1.49028 1.04319 1.51475 1.22895 1.77015 1.20251 1.15319 1.00735 1.27217 0.78304 0.96389 0.99788 1.46176 1.10670 1.49224 1.22545 1.22178 0.83308 1.04239 0.95177 1.17253 0.84568 0.82916 0.83418 1.91073 1.37982 1.57283 1.61805 0.90230 0.91163 0.93458 0.91418 0.91689 0.97567 0.95881 0.97105 0.94651 0.75792 0.85959 0.90164 0.90500 0.86882 0.69094 0.89444 0.84622 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.48 71.98 0.68 -3.15 16 2 C 0.12 4.22 2.88 44.99 0.13 4.35 16 3 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 4 C 0.14 5.23 5.30 86.38 0.46 5.69 16 5 N -0.61 -29.67 2.82 -726.93 -2.05 -31.73 16 6 C 0.18 9.11 8.98 127.77 1.15 10.25 16 7 C -0.24 -12.50 8.79 84.03 0.74 -11.76 16 8 H 0.08 3.96 6.40 -2.91 -0.02 3.94 16 9 C -0.06 -3.13 5.02 84.86 0.43 -2.70 16 10 N -0.94 -56.34 10.65 21.65 0.23 -56.11 16 11 Si 0.95 45.57 29.59 68.60 2.03 47.60 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 N -0.69 -24.10 4.49 -442.54 -1.99 -26.08 16 16 C 0.52 18.55 7.79 87.66 0.68 19.23 16 17 O -0.59 -24.11 15.64 -3.04 -0.05 -24.16 16 18 C -0.15 -4.45 6.02 29.85 0.18 -4.27 16 19 C 0.19 5.59 5.68 86.38 0.49 6.09 16 20 N -0.46 -12.92 3.63 -478.03 -1.73 -14.66 16 21 N -0.31 -6.43 12.53 -59.42 -0.74 -7.17 16 22 C 0.28 3.23 12.66 179.83 2.28 5.50 16 23 N -0.56 -10.11 3.14 -683.67 -2.15 -12.26 16 24 C 0.09 0.87 11.05 127.77 1.41 2.29 16 25 C 0.62 19.12 8.60 178.99 1.54 20.66 16 26 O -0.60 -24.76 17.71 -4.71 -0.08 -24.85 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 31 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 32 H 0.01 0.33 7.48 -2.39 -0.02 0.32 16 33 H 0.02 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.01 0.59 7.08 -2.39 -0.02 0.57 16 35 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.41 13.66 6.58 -92.70 -0.61 13.05 16 37 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 2.69 8.07 -2.38 -0.02 2.67 16 40 H 0.11 3.08 8.10 -2.39 -0.02 3.06 16 41 H 0.29 -0.93 8.06 -2.91 -0.02 -0.96 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.14 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -83.99 370.64 4.02 -79.97 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.39 Total: 17.28 kcal Atomic # 6 Polarization: 42.01 SS G_CDS: 10.16 Total: 52.17 kcal Atomic # 7 Polarization: -139.57 SS G_CDS: -8.43 Total: -148.01 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.13 Total: -49.01 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -83.99 4.02 -79.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.404 kcal (2) G-P(sol) polarization free energy of solvation -83.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds