Wall clock time and date at job start Tue Mar 31 2020 04:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99812 * 2 1 4 4 O 1.21283 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99972 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.50298 * 60.07343 * 5 3 2 7 7 C 1.53122 * 109.49938 * 300.00020 * 5 3 2 8 8 C 1.53128 * 109.15561 * 182.40507 * 7 5 3 9 9 C 1.53035 * 109.27696 * 57.65672 * 8 7 5 10 10 N 1.46842 * 109.52348 * 300.81602 * 9 8 7 11 11 C 1.46904 * 111.00008 * 185.84397 * 10 9 8 12 12 H 1.08997 * 109.46736 * 298.03197 * 11 10 9 13 13 C 1.53006 * 109.46728 * 178.03928 * 11 10 9 14 14 C 1.50692 * 109.47198 * 58.03927 * 11 10 9 15 15 O 1.21281 * 120.00434 * 30.46807 * 14 11 10 16 16 N 1.34773 * 119.99951 * 210.46793 * 14 11 10 17 17 C 1.46501 * 120.00054 * 354.51474 * 16 14 11 18 18 C 1.46505 * 120.00319 * 174.78356 * 16 14 11 19 19 C 1.50700 * 109.46711 * 89.99892 * 18 16 14 20 20 H 1.07998 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99707 * 180.02562 * 19 18 16 22 22 N 1.31518 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47071 * 60.00107 * 23 21 19 25 25 H 1.48494 * 109.47531 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47151 * 300.00402 * 23 21 19 27 27 C 1.46844 * 111.19889 * 61.74427 * 10 9 8 28 28 H 1.09008 * 109.47381 * 299.99398 * 1 2 3 29 29 H 1.08998 * 109.47735 * 59.99597 * 1 2 3 30 30 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 31 31 H 0.97002 * 120.00156 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.52484 * 62.49930 * 7 5 3 33 33 H 1.08997 * 109.57578 * 302.33871 * 7 5 3 34 34 H 1.08997 * 109.50247 * 297.71129 * 8 7 5 35 35 H 1.09001 * 109.49778 * 177.59042 * 8 7 5 36 36 H 1.09005 * 109.46119 * 180.80444 * 9 8 7 37 37 H 1.08998 * 109.45957 * 60.82842 * 9 8 7 38 38 H 1.08999 * 109.47249 * 305.83406 * 13 11 10 39 39 H 1.08998 * 109.47398 * 65.84056 * 13 11 10 40 40 H 1.09006 * 109.46688 * 185.83922 * 13 11 10 41 41 H 1.08992 * 109.47632 * 94.52897 * 17 16 14 42 42 H 1.09004 * 109.47068 * 214.52983 * 17 16 14 43 43 H 1.08998 * 109.46622 * 334.52532 * 17 16 14 44 44 H 1.08998 * 109.47415 * 210.00206 * 18 16 14 45 45 H 1.08997 * 109.46919 * 330.00518 * 18 16 14 46 46 H 0.97004 * 119.99688 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46280 * 58.27757 * 27 10 9 48 48 H 1.09002 * 109.46731 * 178.24295 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0094 0.6549 -0.8913 7 6 4.1574 0.4453 1.2491 8 6 5.6875 0.5023 1.2713 9 6 6.1391 1.9641 1.2395 10 7 5.6250 2.6104 0.0253 11 6 6.1530 3.9747 -0.1088 12 1 5.8241 4.5763 0.7385 13 6 5.6351 4.5965 -1.4074 14 6 7.6589 3.9299 -0.1389 15 8 8.2278 2.9631 -0.6001 16 7 8.3737 4.9641 0.3466 17 6 7.6909 6.1811 0.7927 18 6 9.8340 4.8738 0.4229 19 6 10.4365 5.3867 -0.8597 20 1 9.7959 5.7445 -1.6521 21 6 11.8058 5.3990 -1.0214 22 7 12.5859 4.9628 -0.0566 23 14 12.5528 6.0354 -2.6109 24 1 12.1550 7.4519 -2.8125 25 1 14.0329 5.9426 -2.5342 26 1 12.0643 5.2173 -3.7498 27 6 4.1567 2.6098 0.0045 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.8319 -0.5947 1.2279 33 1 3.7618 0.9327 2.1401 34 1 6.0838 -0.0201 0.4005 35 1 6.0561 0.0272 2.1804 36 1 7.2283 2.0079 1.2408 37 1 5.7539 2.4824 2.1176 38 1 5.8746 3.9411 -2.2448 39 1 4.5546 4.7243 -1.3434 40 1 6.1075 5.5671 -1.5590 41 1 7.5155 6.1263 1.8671 42 1 8.3120 7.0487 0.5698 43 1 6.7373 6.2738 0.2731 44 1 10.1921 5.4750 1.2585 45 1 10.1264 3.8343 0.5714 46 1 13.5492 4.9718 -0.1703 47 1 3.7808 3.1252 0.8884 48 1 3.8059 3.1225 -0.8912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247747310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:42 Heat of formation + Delta-G solvation = -66.735764 kcal Electronic energy + Delta-G solvation = -27110.332015 eV Core-core repulsion = 23393.269776 eV Total energy + Delta-G solvation = -3717.062238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53155 -39.44550 -37.73844 -34.94534 -34.73949 -34.21952 -32.52834 -31.36893 -29.95981 -27.73983 -27.29958 -25.89018 -24.77391 -23.95777 -23.01891 -21.44636 -20.82706 -19.80063 -18.41907 -17.43172 -16.60127 -16.50474 -16.30656 -15.83056 -15.44184 -15.13704 -14.81432 -14.41725 -14.17477 -14.13237 -13.85654 -13.49611 -13.35902 -13.06058 -12.99996 -12.71312 -12.62651 -12.26433 -12.11361 -11.92022 -11.78507 -11.57191 -11.48724 -11.36044 -11.14121 -10.89318 -10.87343 -10.73399 -10.53630 -10.40462 -10.12003 -9.92015 -9.59880 -9.44834 -8.75531 -8.40090 -8.13073 -7.58703 -6.01021 -4.05263 2.40745 2.87433 3.34484 3.38663 3.40585 3.45674 3.73326 4.19562 4.41424 4.47918 4.57731 4.67766 4.83880 5.01358 5.09805 5.14269 5.15896 5.27263 5.31858 5.34840 5.39506 5.43277 5.45051 5.53268 5.64097 5.66270 5.76052 5.83081 5.85193 5.91572 5.95671 6.00615 6.08271 6.16713 6.22086 6.27048 6.41813 6.98110 7.13252 7.17918 7.19920 7.45558 7.58911 7.95438 7.95661 8.27062 8.46898 8.94471 9.17056 9.59663 11.07006 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.002882 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.585805 B = 9711.634775 C = 9942.077194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.520 3.480 4 O -0.539 6.539 5 C -0.104 4.104 6 H 0.109 0.891 7 C -0.109 4.109 8 C -0.111 4.111 9 C 0.050 3.950 10 N -0.515 5.515 11 C 0.067 3.933 12 H 0.055 0.945 13 C -0.142 4.142 14 C 0.510 3.490 15 O -0.519 6.519 16 N -0.606 5.606 17 C 0.081 3.919 18 C 0.248 3.752 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.075 3.925 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.403 0.597 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.041 0.959 46 H 0.263 0.737 47 H 0.039 0.961 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.158 -8.858 3.738 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.389 5.389 3 C 0.306 3.694 4 O -0.415 6.415 5 C -0.125 4.125 6 H 0.127 0.873 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.078 4.078 10 N -0.240 5.240 11 C -0.045 4.045 12 H 0.073 0.927 13 C -0.199 4.199 14 C 0.295 3.705 15 O -0.394 6.394 16 N -0.339 5.339 17 C -0.063 4.063 18 C 0.129 3.871 19 C -0.562 4.562 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.053 4.053 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.917 -8.893 3.153 23.862 hybrid contribution 0.362 0.506 -0.127 0.635 sum -21.555 -8.387 3.026 23.327 Atomic orbital electron populations 1.21525 0.79765 1.02109 1.02313 1.45827 1.07684 1.08913 1.76517 1.20742 0.90141 0.83458 0.75041 1.90703 1.70571 1.31319 1.48925 1.21335 0.90272 0.99336 1.01579 0.87307 1.21586 0.97103 0.99723 0.96319 1.21536 0.93941 0.96585 1.02861 1.22187 1.01721 0.94279 0.89626 1.61600 1.06558 1.17133 1.38745 1.21649 0.94087 0.89508 0.99234 0.92726 1.21808 1.00595 1.01014 0.96521 1.20041 0.87988 0.83496 0.78978 1.90672 1.71669 1.33364 1.43726 1.48192 1.09660 1.14158 1.61891 1.21676 0.97311 0.89054 0.98268 1.19250 0.72251 0.98602 0.97029 1.21392 0.91536 1.41985 1.01286 0.92531 1.24935 0.97019 0.95411 0.96783 1.69925 1.04339 1.46833 1.32474 0.86563 0.77849 0.79224 0.83816 1.20291 1.21223 1.20156 1.21846 0.87072 0.94125 1.02292 0.92310 0.92250 0.90738 0.76367 0.91475 0.91780 0.90367 0.91083 0.89277 0.95353 0.90816 0.91859 0.91450 0.93918 0.90818 0.92301 0.95082 0.94053 0.92721 0.94261 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.84 0.64 1.18 16 2 N -0.74 -5.35 5.62 -67.07 -0.38 -5.73 16 3 C 0.52 5.57 7.16 -10.98 -0.08 5.49 16 4 O -0.54 -7.84 15.98 5.56 0.09 -7.75 16 5 C -0.10 -1.06 2.69 -91.69 -0.25 -1.31 16 6 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.11 -0.97 5.16 -26.60 -0.14 -1.11 16 8 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 9 C 0.05 0.71 5.14 -3.84 -0.02 0.69 16 10 N -0.52 -7.72 4.27 -228.08 -0.97 -8.69 16 11 C 0.07 1.08 1.62 -68.86 -0.11 0.96 16 12 H 0.05 0.80 6.78 -51.93 -0.35 0.45 16 13 C -0.14 -2.05 8.43 37.16 0.31 -1.73 16 14 C 0.51 10.76 5.63 -10.99 -0.06 10.70 16 15 O -0.52 -13.19 15.28 5.56 0.08 -13.10 16 16 N -0.61 -13.05 2.86 -182.96 -0.52 -13.57 16 17 C 0.08 1.33 9.87 59.85 0.59 1.92 16 18 C 0.25 6.54 5.14 -5.19 -0.03 6.52 16 19 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 23 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.07 0.95 3.75 -3.84 -0.01 0.94 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.40 1.82 8.30 -40.82 -0.34 1.48 16 32 H 0.07 0.42 7.65 -51.93 -0.40 0.03 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.58 6.19 -51.93 -0.32 1.25 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 40 H 0.07 0.96 7.19 -51.93 -0.37 0.58 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.06 0.81 5.38 -51.93 -0.28 0.53 16 44 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 48 H 0.09 1.14 6.05 -51.93 -0.31 0.82 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -35.68 377.80 -8.16 -43.85 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.14 Total: -0.88 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.26 Total: 9.17 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -1.14 Total: -54.10 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.68 -8.16 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247747310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.888 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds