Wall clock time and date at job start Tue Mar 31 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47258 * 2 1 4 4 C 1.46842 * 110.99905 * 288.04961 * 3 2 1 5 5 C 1.53041 * 109.52477 * 174.15889 * 4 3 2 6 6 C 1.53119 * 109.27527 * 59.17804 * 5 4 3 7 7 C 1.53121 * 109.16247 * 302.34767 * 6 5 4 8 8 C 1.46848 * 111.00152 * 163.83822 * 3 2 1 9 9 H 1.09001 * 109.45277 * 65.82513 * 8 3 2 10 10 C 1.50697 * 109.46343 * 305.85846 * 8 3 2 11 11 O 1.21284 * 119.99957 * 330.34401 * 10 8 3 12 12 N 1.34775 * 120.00370 * 150.34548 * 10 8 3 13 13 C 1.46504 * 120.00394 * 179.97438 * 12 10 8 14 14 H 1.09002 * 110.88200 * 37.42819 * 13 12 10 15 15 C 1.54910 * 111.00389 * 273.55291 * 13 12 10 16 16 N 1.47430 * 104.82830 * 204.91529 * 15 13 12 17 17 C 1.36933 * 125.64492 * 204.09295 * 16 15 13 18 18 H 1.07995 * 120.00505 * 354.78184 * 17 16 15 19 19 C 1.38819 * 119.99869 * 175.06135 * 17 16 15 20 20 N 1.31614 * 119.99798 * 6.79557 * 19 17 16 21 21 Si 1.86796 * 120.00029 * 186.80093 * 19 17 16 22 22 H 1.48506 * 109.47295 * 94.98206 * 21 19 17 23 23 H 1.48502 * 109.47086 * 214.98284 * 21 19 17 24 24 H 1.48503 * 109.47261 * 334.98179 * 21 19 17 25 25 C 1.47021 * 108.70388 * 24.35337 * 16 15 13 26 26 C 1.54339 * 107.26670 * 358.58733 * 25 16 15 27 27 H 1.08994 * 110.51724 * 96.45065 * 26 25 16 28 28 O 1.42900 * 111.00199 * 219.60517 * 26 25 16 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47369 * 299.99886 * 1 2 3 31 31 H 1.08997 * 109.47356 * 60.00274 * 1 2 3 32 32 H 1.08997 * 109.47369 * 240.00114 * 2 1 3 33 33 H 1.08998 * 109.46898 * 119.99992 * 2 1 3 34 34 H 1.08998 * 109.46273 * 54.14484 * 4 3 2 35 35 H 1.09006 * 109.45427 * 294.16928 * 4 3 2 36 36 H 1.08994 * 109.50003 * 299.23864 * 5 4 3 37 37 H 1.08994 * 109.53626 * 179.14067 * 5 4 3 38 38 H 1.08996 * 109.52292 * 182.44242 * 6 5 4 39 39 H 1.09001 * 109.57378 * 62.28263 * 6 5 4 40 40 H 1.09003 * 109.50359 * 297.71400 * 7 6 5 41 41 H 1.09005 * 109.53435 * 177.61450 * 7 6 5 42 42 H 0.97001 * 119.99769 * 0.02562 * 12 10 8 43 43 H 1.08997 * 110.36621 * 86.07755 * 15 13 12 44 44 H 1.08995 * 110.45686 * 323.79638 * 15 13 12 45 45 H 0.97000 * 120.00039 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88378 * 118.13137 * 25 16 15 47 47 H 1.09003 * 109.88279 * 239.29810 * 25 16 15 48 48 H 0.96707 * 113.99489 * 293.78062 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7946 2.0227 -1.3034 5 6 2.1814 3.5013 -1.2231 6 6 3.6553 3.6172 -0.8248 7 6 3.8723 2.9033 0.5123 8 6 3.4365 1.4422 0.3816 9 1 4.0385 0.9506 -0.3827 10 6 3.6299 0.7406 1.7012 11 8 2.7295 0.7176 2.5134 12 7 4.8034 0.1386 1.9788 13 6 4.9915 -0.5431 3.2618 14 1 4.0772 -1.0501 3.5702 15 6 5.4717 0.4476 4.3517 16 7 6.1834 -0.3892 5.3350 17 6 6.3765 -0.0799 6.6549 18 1 6.0665 0.8822 7.0351 19 6 6.9759 -1.0009 7.5031 20 7 7.4790 -2.1148 7.0149 21 14 7.0682 -0.6594 9.3372 22 1 5.9207 -1.3091 10.0202 23 1 8.3393 -1.2039 9.8787 24 1 7.0182 0.8062 9.5710 25 6 6.6569 -1.6077 4.6623 26 6 6.1830 -1.5346 3.1952 27 1 6.9752 -1.1434 2.5569 28 8 5.7497 -2.8153 2.7327 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 0.7419 1.9369 -1.5728 35 1 2.4045 1.5283 -2.0596 36 1 1.5625 3.9992 -0.4767 37 1 2.0288 3.9712 -2.1946 38 1 3.9238 4.6688 -0.7241 39 1 4.2780 3.1540 -1.5903 40 1 3.2801 3.3919 1.2860 41 1 4.9279 2.9456 0.7810 42 1 5.5236 0.1573 1.3293 43 1 4.6189 0.9399 4.8191 44 1 6.1478 1.1872 3.9230 45 1 7.8975 -2.7586 7.6076 46 1 7.7453 -1.6531 4.7004 47 1 6.2300 -2.4871 5.1444 48 1 6.4571 -3.4720 2.6731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078228564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:21 Heat of formation + Delta-G solvation = -54.883723 kcal Electronic energy + Delta-G solvation = -27335.562548 eV Core-core repulsion = 23619.014252 eV Total energy + Delta-G solvation = -3716.548295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42395 -38.64688 -37.42012 -35.07991 -34.53580 -33.91012 -31.94192 -31.17641 -29.90245 -28.38603 -27.08238 -25.04715 -24.41538 -23.75439 -21.62482 -20.84192 -20.51380 -20.10985 -19.69052 -17.45921 -17.04542 -16.63706 -16.17154 -15.50135 -15.37341 -14.83183 -14.68149 -14.49114 -14.18362 -14.05981 -13.68291 -13.52732 -13.33395 -13.17212 -12.78759 -12.65884 -12.39862 -12.04456 -11.96890 -11.83487 -11.53245 -11.49516 -11.27653 -11.26142 -11.00193 -10.89696 -10.81285 -10.72806 -10.50093 -10.14835 -9.90274 -9.86035 -9.58697 -9.24347 -8.79766 -8.60764 -8.43368 -6.90981 -5.77580 -3.10618 2.80003 3.16027 3.40195 3.45804 3.47055 3.77886 4.43077 4.54970 4.59352 4.61515 4.69732 4.89873 4.95218 5.03529 5.08555 5.19357 5.24775 5.29761 5.42193 5.42513 5.46418 5.49824 5.57040 5.65838 5.67716 5.68697 5.78574 5.81829 5.89435 5.93321 6.00015 6.08364 6.13858 6.14577 6.22938 6.54324 6.64500 6.82919 6.92552 6.96510 7.29533 7.48046 7.70502 7.76211 8.09205 8.17391 8.46891 9.14971 9.75381 10.38851 11.34675 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003188 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.293483 B = 8781.561040 C = 9116.445558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.515 5.515 4 C 0.056 3.944 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.107 4.107 8 C 0.073 3.927 9 H 0.055 0.945 10 C 0.515 3.485 11 O -0.516 6.516 12 N -0.717 5.717 13 C 0.141 3.859 14 H 0.101 0.899 15 C 0.131 3.869 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.153 3.847 26 C 0.069 3.931 27 H 0.056 0.944 28 O -0.563 6.563 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 6.502 -20.394 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.241 5.241 4 C -0.072 4.072 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.145 4.145 8 C -0.039 4.039 9 H 0.073 0.927 10 C 0.300 3.700 11 O -0.390 6.390 12 N -0.369 5.369 13 C 0.036 3.964 14 H 0.119 0.881 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.027 3.973 26 C 0.009 3.991 27 H 0.074 0.926 28 O -0.368 6.368 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.917 6.940 -19.267 21.956 hybrid contribution 1.605 -0.684 0.058 1.746 sum -6.312 6.256 -19.208 21.165 Atomic orbital electron populations 1.21702 0.94567 1.01343 1.02264 1.22188 0.96738 0.88186 1.01104 1.61683 1.15381 1.17975 1.29068 1.22156 1.01298 0.94795 0.88940 1.21613 0.96614 0.95760 1.01664 1.21570 0.96635 1.00706 0.96696 1.21543 1.01552 0.92592 0.98861 1.21585 0.90387 0.97424 0.94477 0.92711 1.20330 0.82366 0.78732 0.88619 1.90731 1.41201 1.58349 1.48747 1.46009 1.15496 1.55970 1.19393 1.22215 0.99055 0.92450 0.82659 0.88086 1.21845 0.95262 0.92873 0.89683 1.44245 1.63430 1.19101 1.05996 1.19095 1.34262 0.99808 0.82574 0.90109 1.24831 1.00495 0.96551 0.98372 1.69931 1.42973 1.10612 1.33429 0.86074 0.77106 0.77566 0.84888 1.21470 1.21754 1.20532 1.21826 0.98229 0.91502 0.85702 1.23440 0.94613 0.83229 0.97834 0.92592 1.86467 1.39401 1.22070 1.88889 0.92473 0.91496 0.93148 0.95312 0.89786 0.90208 0.95049 0.90793 0.91510 0.91284 0.92142 0.90069 0.90860 0.77148 0.93032 0.96001 0.93661 0.93543 0.91948 0.77688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.96 37.15 0.37 -1.15 16 2 C 0.05 0.55 5.33 -3.83 -0.02 0.53 16 3 N -0.52 -6.18 4.21 -228.09 -0.96 -7.14 16 4 C 0.06 0.51 5.30 -3.83 -0.02 0.49 16 5 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 6 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 7 C -0.11 -1.11 5.36 -26.65 -0.14 -1.25 16 8 C 0.07 0.87 2.23 -68.88 -0.15 0.72 16 9 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 10 C 0.51 7.99 5.66 -10.99 -0.06 7.93 16 11 O -0.52 -10.18 15.18 5.55 0.08 -10.10 16 12 N -0.72 -10.69 5.23 -51.73 -0.27 -10.96 16 13 C 0.14 2.68 3.04 -65.78 -0.20 2.48 16 14 H 0.10 2.22 7.73 -51.93 -0.40 1.82 16 15 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 16 N -0.60 -15.46 3.39 -170.06 -0.58 -16.04 16 17 C -0.23 -6.46 10.27 -15.06 -0.15 -6.62 16 18 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.78 10.36 55.49 0.57 -26.21 16 21 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.63 5.17 -3.06 -0.02 3.62 16 26 C 0.07 1.26 3.94 -24.89 -0.10 1.16 16 27 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 28 O -0.56 -9.65 13.40 -35.23 -0.47 -10.13 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.46 6.66 -51.93 -0.35 0.11 16 32 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.08 1.28 5.70 -51.93 -0.30 0.98 16 34 H 0.08 0.67 6.50 -51.93 -0.34 0.34 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.39 4.68 8.52 -40.82 -0.35 4.34 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.05 1.18 7.62 -51.93 -0.40 0.79 16 47 H 0.06 1.67 7.20 -51.93 -0.37 1.30 16 48 H 0.38 4.87 9.12 45.56 0.42 5.28 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -33.18 372.36 -9.50 -42.68 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.54 Total: 6.86 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.93 Total: 8.22 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -1.23 Total: -60.35 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.39 Total: -20.22 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.18 -9.50 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078228564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.199 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds