Wall clock time and date at job start Tue Mar 31 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47258 * 2 1 4 4 C 1.46842 * 110.99905 * 288.04961 * 3 2 1 5 5 C 1.53041 * 109.52477 * 174.15889 * 4 3 2 6 6 C 1.53119 * 109.27527 * 59.17804 * 5 4 3 7 7 C 1.53121 * 109.16247 * 302.34767 * 6 5 4 8 8 C 1.46848 * 111.00152 * 163.83822 * 3 2 1 9 9 H 1.09001 * 109.45277 * 65.82513 * 8 3 2 10 10 C 1.50697 * 109.46343 * 305.85846 * 8 3 2 11 11 O 1.21284 * 119.99957 * 330.34401 * 10 8 3 12 12 N 1.34775 * 120.00370 * 150.34548 * 10 8 3 13 13 C 1.46504 * 120.00394 * 179.97438 * 12 10 8 14 14 H 1.09002 * 110.88200 * 37.42819 * 13 12 10 15 15 C 1.54910 * 111.00389 * 273.55291 * 13 12 10 16 16 N 1.47430 * 104.82830 * 204.91529 * 15 13 12 17 17 C 1.36933 * 125.64492 * 204.09295 * 16 15 13 18 18 H 1.07995 * 120.00505 * 354.78184 * 17 16 15 19 19 C 1.38819 * 119.99869 * 175.06135 * 17 16 15 20 20 N 1.31614 * 119.99798 * 6.79557 * 19 17 16 21 21 Si 1.86796 * 120.00029 * 186.80093 * 19 17 16 22 22 H 1.48506 * 109.47295 * 94.98206 * 21 19 17 23 23 H 1.48502 * 109.47086 * 214.98284 * 21 19 17 24 24 H 1.48503 * 109.47261 * 334.98179 * 21 19 17 25 25 C 1.47021 * 108.70388 * 24.35337 * 16 15 13 26 26 C 1.54339 * 107.26670 * 358.58733 * 25 16 15 27 27 H 1.08994 * 110.51724 * 96.45065 * 26 25 16 28 28 O 1.42900 * 111.00199 * 219.60517 * 26 25 16 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47369 * 299.99886 * 1 2 3 31 31 H 1.08997 * 109.47356 * 60.00274 * 1 2 3 32 32 H 1.08997 * 109.47369 * 240.00114 * 2 1 3 33 33 H 1.08998 * 109.46898 * 119.99992 * 2 1 3 34 34 H 1.08998 * 109.46273 * 54.14484 * 4 3 2 35 35 H 1.09006 * 109.45427 * 294.16928 * 4 3 2 36 36 H 1.08994 * 109.50003 * 299.23864 * 5 4 3 37 37 H 1.08994 * 109.53626 * 179.14067 * 5 4 3 38 38 H 1.08996 * 109.52292 * 182.44242 * 6 5 4 39 39 H 1.09001 * 109.57378 * 62.28263 * 6 5 4 40 40 H 1.09003 * 109.50359 * 297.71400 * 7 6 5 41 41 H 1.09005 * 109.53435 * 177.61450 * 7 6 5 42 42 H 0.97001 * 119.99769 * 0.02562 * 12 10 8 43 43 H 1.08997 * 110.36621 * 86.07755 * 15 13 12 44 44 H 1.08995 * 110.45686 * 323.79638 * 15 13 12 45 45 H 0.97000 * 120.00039 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88378 * 118.13137 * 25 16 15 47 47 H 1.09003 * 109.88279 * 239.29810 * 25 16 15 48 48 H 0.96707 * 113.99489 * 293.78062 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7946 2.0227 -1.3034 5 6 2.1814 3.5013 -1.2231 6 6 3.6553 3.6172 -0.8248 7 6 3.8723 2.9033 0.5123 8 6 3.4365 1.4422 0.3816 9 1 4.0385 0.9506 -0.3827 10 6 3.6299 0.7406 1.7012 11 8 2.7295 0.7176 2.5134 12 7 4.8034 0.1386 1.9788 13 6 4.9915 -0.5431 3.2618 14 1 4.0772 -1.0501 3.5702 15 6 5.4717 0.4476 4.3517 16 7 6.1834 -0.3892 5.3350 17 6 6.3765 -0.0799 6.6549 18 1 6.0665 0.8822 7.0351 19 6 6.9759 -1.0009 7.5031 20 7 7.4790 -2.1148 7.0149 21 14 7.0682 -0.6594 9.3372 22 1 5.9207 -1.3091 10.0202 23 1 8.3393 -1.2039 9.8787 24 1 7.0182 0.8062 9.5710 25 6 6.6569 -1.6077 4.6623 26 6 6.1830 -1.5346 3.1952 27 1 6.9752 -1.1434 2.5569 28 8 5.7497 -2.8153 2.7327 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 0.7419 1.9369 -1.5728 35 1 2.4045 1.5283 -2.0596 36 1 1.5625 3.9992 -0.4767 37 1 2.0288 3.9712 -2.1946 38 1 3.9238 4.6688 -0.7241 39 1 4.2780 3.1540 -1.5903 40 1 3.2801 3.3919 1.2860 41 1 4.9279 2.9456 0.7810 42 1 5.5236 0.1573 1.3293 43 1 4.6189 0.9399 4.8191 44 1 6.1478 1.1872 3.9230 45 1 7.8975 -2.7586 7.6076 46 1 7.7453 -1.6531 4.7004 47 1 6.2300 -2.4871 5.1444 48 1 6.4571 -3.4720 2.6731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078228564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:20 Heat of formation + Delta-G solvation = -81.616283 kcal Electronic energy + Delta-G solvation = -27336.721758 eV Core-core repulsion = 23619.014252 eV Total energy + Delta-G solvation = -3717.707506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56443 -39.99998 -38.71883 -36.70168 -35.65771 -35.15306 -33.70290 -32.25690 -30.71996 -30.16213 -28.79921 -26.59409 -25.52307 -24.81531 -22.62915 -22.37392 -21.98486 -21.45524 -20.61348 -19.13355 -18.51955 -18.06350 -17.46560 -16.96567 -16.42899 -16.32158 -15.80893 -15.69753 -15.48429 -15.34145 -14.90732 -14.58961 -14.47711 -14.40371 -14.14360 -14.07741 -13.76839 -13.61813 -13.19064 -13.13012 -12.79820 -12.77697 -12.75645 -12.68113 -12.33031 -12.09895 -12.06582 -11.90972 -11.74660 -11.57002 -11.55169 -11.21498 -11.04741 -10.77693 -10.59967 -10.17114 -9.26988 -8.98864 -7.92247 -5.28034 1.43941 1.47055 1.55196 1.58134 1.94783 2.45793 2.87618 3.10571 3.28234 3.51900 3.57771 3.81681 3.89300 3.97095 4.01869 4.03110 4.14150 4.16906 4.23246 4.31400 4.42138 4.42934 4.54642 4.57142 4.59434 4.73507 4.80022 4.80799 4.91811 4.96305 4.98718 5.10413 5.11497 5.21546 5.25143 5.32417 5.34900 5.41975 5.45801 5.49852 5.63692 5.97953 6.11448 6.16469 6.56653 6.84402 7.02588 7.26257 7.66933 8.29810 9.17999 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003188 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.293483 B = 8781.561040 C = 9116.445558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 N -0.536 5.536 4 C 0.055 3.945 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.106 4.106 8 C 0.081 3.919 9 H 0.082 0.918 10 C 0.513 3.487 11 O -0.565 6.565 12 N -0.702 5.702 13 C 0.157 3.843 14 H 0.065 0.935 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.251 4.251 18 H 0.080 0.920 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.268 1.268 25 C 0.160 3.840 26 C 0.093 3.907 27 H 0.096 0.904 28 O -0.569 6.569 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.415 0.585 43 H 0.030 0.970 44 H 0.042 0.958 45 H 0.250 0.750 46 H 0.026 0.974 47 H 0.022 0.978 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 7.577 -23.172 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 N -0.263 5.263 4 C -0.072 4.072 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.145 4.145 8 C -0.031 4.031 9 H 0.099 0.901 10 C 0.300 3.700 11 O -0.442 6.442 12 N -0.355 5.355 13 C 0.050 3.950 14 H 0.084 0.916 15 C 0.006 3.994 16 N -0.350 5.350 17 C -0.379 4.379 18 H 0.098 0.902 19 C -0.252 4.252 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.193 1.193 25 C 0.034 3.966 26 C 0.033 3.967 27 H 0.114 0.886 28 O -0.376 6.376 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.252 0.748 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.339 8.027 -22.106 24.637 hybrid contribution 1.385 -1.024 0.916 1.951 sum -5.955 7.003 -21.190 23.098 Atomic orbital electron populations 1.21660 0.93778 1.01834 1.02097 1.22112 0.97466 0.88479 1.00020 1.61678 1.15466 1.17889 1.31227 1.22264 1.02077 0.95237 0.87616 1.21628 0.96382 0.95001 1.02488 1.21564 0.96871 1.01176 0.95399 1.21574 1.01595 0.91493 0.99819 1.21593 0.91129 0.97958 0.92391 0.90061 1.21134 0.81442 0.77821 0.89595 1.90713 1.42795 1.60027 1.50664 1.45772 1.16324 1.55277 1.18155 1.21659 0.97596 0.91923 0.83798 0.91646 1.21907 0.94443 0.93317 0.89717 1.44511 1.63998 1.20273 1.06196 1.19431 1.34223 1.00076 0.84208 0.90204 1.25654 1.00478 0.96569 1.02513 1.70124 1.43470 1.11248 1.34483 0.85064 0.76737 0.77939 0.79614 1.21648 1.21487 1.19250 1.21641 0.96661 0.89403 0.88858 1.23115 0.94798 0.83947 0.94860 0.88647 1.86435 1.40816 1.22148 1.88238 0.91716 0.93774 0.91077 0.93638 0.93394 0.89603 0.93593 0.92367 0.89104 0.90174 0.90357 0.92708 0.89809 0.74756 0.95196 0.94045 0.94070 0.95612 0.95976 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.96 71.98 0.72 -2.12 16 2 C 0.05 1.11 5.33 86.30 0.46 1.57 16 3 N -0.54 -12.10 4.21 -875.53 -3.69 -15.79 16 4 C 0.05 0.84 5.30 86.33 0.46 1.30 16 5 C -0.12 -1.53 6.09 30.65 0.19 -1.35 16 6 C -0.11 -1.42 6.00 30.67 0.18 -1.24 16 7 C -0.11 -1.99 5.36 30.64 0.16 -1.83 16 8 C 0.08 1.77 2.23 44.19 0.10 1.87 16 9 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 10 C 0.51 15.75 5.66 87.66 0.50 16.24 16 11 O -0.56 -23.16 15.18 -3.04 -0.05 -23.20 16 12 N -0.70 -20.05 5.23 -435.96 -2.28 -22.33 16 13 C 0.16 5.97 3.04 46.38 0.14 6.11 16 14 H 0.07 2.99 7.73 -2.39 -0.02 2.98 16 15 C 0.13 5.84 6.93 86.85 0.60 6.44 16 16 N -0.62 -32.89 3.39 -691.96 -2.35 -35.24 16 17 C -0.25 -14.48 10.27 84.04 0.86 -13.62 16 18 H 0.08 4.48 7.84 -2.91 -0.02 4.45 16 19 C -0.06 -3.37 5.48 84.86 0.46 -2.90 16 20 N -0.95 -56.35 10.36 21.65 0.22 -56.12 16 21 Si 0.98 46.37 29.56 68.60 2.03 48.39 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.16 7.77 5.17 86.73 0.45 8.22 16 26 C 0.09 3.32 3.94 31.79 0.13 3.44 16 27 H 0.10 2.73 8.00 -2.39 -0.02 2.72 16 28 O -0.57 -18.76 13.40 -148.98 -2.00 -20.75 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.16 6.66 -2.39 -0.02 1.15 16 32 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 33 H 0.05 1.48 5.70 -2.39 -0.01 1.47 16 34 H 0.09 1.21 6.50 -2.39 -0.02 1.19 16 35 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.42 8.56 8.52 -92.71 -0.79 7.77 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.03 1.34 7.62 -2.39 -0.02 1.32 16 47 H 0.02 1.24 7.20 -2.39 -0.02 1.22 16 48 H 0.40 9.56 9.12 -74.05 -0.68 8.88 16 Total: -1.00 -75.92 372.36 -3.21 -79.13 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.51 Total: 23.78 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 5.41 Total: 22.14 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -8.09 Total: -129.48 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -2.04 Total: -43.96 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -75.92 -3.21 -79.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078228564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.488 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds