Wall clock time and date at job start Tue Mar 31 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47667 * 2 1 4 4 C 1.52999 * 109.47227 * 120.00247 * 2 1 3 5 5 N 1.46897 * 109.47276 * 294.99780 * 4 2 1 6 6 C 1.46894 * 111.00228 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47119 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00092 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00233 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00308 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00296 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00324 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00382 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99763 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.46973 * 89.99859 * 14 12 10 16 16 H 1.48497 * 109.46885 * 210.00164 * 14 12 10 17 17 H 1.48499 * 109.46983 * 329.99406 * 14 12 10 18 18 C 1.53001 * 109.47240 * 240.00226 * 2 1 3 19 19 N 1.46501 * 109.47054 * 65.00039 * 18 2 1 20 20 C 1.34779 * 120.00111 * 180.02562 * 19 18 2 21 21 O 1.21286 * 119.99725 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00312 * 179.97438 * 20 19 18 23 23 C 1.52993 * 109.47288 * 174.36567 * 22 20 19 24 24 C 1.53007 * 115.55897 * 81.81811 * 23 22 20 25 25 C 1.53000 * 117.50106 * 296.13488 * 23 22 20 26 26 C 1.52998 * 117.50141 * 227.50560 * 23 22 20 27 27 H 1.09003 * 109.47667 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47575 * 299.99748 * 1 2 3 29 29 H 1.09006 * 109.47660 * 59.99754 * 1 2 3 30 30 H 1.08999 * 109.47211 * 54.99878 * 4 2 1 31 31 H 1.09004 * 109.46937 * 175.00123 * 4 2 1 32 32 H 1.00904 * 110.99734 * 303.95705 * 5 4 2 33 33 H 1.09005 * 109.47160 * 299.99923 * 6 5 4 34 34 H 1.08995 * 109.47600 * 59.99756 * 6 5 4 35 35 H 0.97002 * 119.99824 * 0.02562 * 9 7 6 36 36 H 0.96995 * 119.99674 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.46721 * 305.00066 * 18 2 1 38 38 H 1.09000 * 109.47537 * 185.00289 * 18 2 1 39 39 H 0.96994 * 120.00197 * 359.97438 * 19 18 2 40 40 H 1.08998 * 109.46989 * 54.36427 * 22 20 19 41 41 H 1.09000 * 109.46682 * 294.37257 * 22 20 19 42 42 H 1.08997 * 109.47300 * 272.00049 * 24 23 22 43 43 H 1.09002 * 109.47126 * 32.00383 * 24 23 22 44 44 H 1.09007 * 109.46811 * 152.00439 * 24 23 22 45 45 H 1.09000 * 117.50012 * 145.02376 * 25 23 22 46 46 H 1.08994 * 117.49988 * 359.97438 * 25 23 22 47 47 H 1.09001 * 117.50009 * 0.02562 * 26 23 22 48 48 H 1.09001 * 117.50312 * 214.98117 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1258 -0.6266 3.6671 7 6 1.7088 0.1785 4.8708 8 8 1.0780 1.2042 4.7255 9 7 2.0358 -0.2417 6.1089 10 6 1.6569 0.4909 7.2039 11 1 1.0959 1.4047 7.0745 12 6 1.9946 0.0580 8.4803 13 7 1.6309 0.7600 9.5300 14 14 2.9655 -1.5222 8.7042 15 1 4.4185 -1.2161 8.6930 16 1 2.6012 -2.1474 10.0010 17 1 2.6483 -2.4591 7.5967 18 6 2.0399 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9955 -0.4134 -3.6660 21 8 2.6256 -1.4436 -3.7793 22 6 1.5964 0.3646 -4.8934 23 6 2.2238 -0.2788 -6.1315 24 6 1.4764 -1.4879 -6.6977 25 6 3.7508 -0.2836 -6.2283 26 6 2.9301 0.6444 -7.1264 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8900 30 1 1.6053 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2055 32 1 1.9882 0.9872 2.3966 33 1 1.6921 -1.6247 3.7300 34 1 3.2127 -0.7039 3.6400 35 1 2.5400 -1.0623 6.2252 36 1 1.8670 0.4579 10.4210 37 1 1.6053 -1.7198 -1.2952 38 1 3.1262 -0.7995 -1.2056 39 1 1.1482 0.8591 -2.3518 40 1 1.9462 1.3928 -4.8015 41 1 0.5108 0.3576 -4.9908 42 1 1.8250 -2.3947 -6.2035 43 1 0.4070 -1.3678 -6.5243 44 1 1.6647 -1.5625 -7.7688 45 1 4.2228 -1.1479 -6.6953 46 1 4.3083 0.1721 -5.4100 47 1 2.9481 1.7102 -6.8986 48 1 2.8623 0.3905 -8.1842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:47 Heat of formation + Delta-G solvation = -59.482269 kcal Electronic energy + Delta-G solvation = -24859.736508 eV Core-core repulsion = 21142.988805 eV Total energy + Delta-G solvation = -3716.747703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.29275 -38.61708 -38.11574 -37.06380 -34.91984 -33.92015 -32.49279 -31.64946 -30.13685 -28.55948 -27.56287 -26.48363 -24.71776 -23.03753 -22.75991 -21.06017 -20.68762 -19.44246 -19.23225 -18.31782 -17.19532 -16.53476 -16.13032 -15.87989 -15.78319 -15.36953 -14.98762 -14.67950 -14.49979 -14.37294 -14.01986 -13.63372 -13.39511 -13.20743 -13.11649 -12.84216 -12.65402 -12.61113 -12.31243 -12.08472 -12.00587 -11.85309 -11.78398 -11.57418 -11.25462 -11.10523 -11.08764 -10.93410 -10.64606 -10.60119 -10.26729 -9.98480 -9.81739 -9.58156 -9.30670 -8.60495 -8.20762 -8.14696 -6.32005 -3.83497 2.41931 2.81137 3.02383 3.06187 3.14649 3.49527 3.73274 4.06517 4.10414 4.21629 4.36542 4.47515 4.60884 4.65530 4.67093 4.80897 4.82911 5.00601 5.06763 5.18331 5.20998 5.28537 5.29929 5.40091 5.48028 5.53239 5.55199 5.60506 5.61330 5.63262 5.68295 5.77875 5.80507 5.81066 5.84551 5.92885 5.94409 6.05635 6.20727 6.35034 7.06009 7.22957 7.54304 7.57603 7.99398 8.13517 8.58876 8.94023 9.41579 9.81740 10.81087 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.040635 B = 0.001730 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.893781 B =16177.860838 C =16447.036441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.125 3.875 19 N -0.731 5.731 20 C 0.510 3.490 21 O -0.532 6.532 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.156 4.156 26 C -0.178 4.178 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.350 0.650 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.371 0.629 36 H 0.273 0.727 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.400 0.600 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -3.572 -30.741 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.384 5.384 20 C 0.297 3.703 21 O -0.408 6.408 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.169 4.169 25 C -0.193 4.193 26 C -0.215 4.215 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.169 0.831 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.569 -3.883 -30.627 30.912 hybrid contribution 1.502 -0.656 0.543 1.726 sum 3.070 -4.538 -30.084 30.579 Atomic orbital electron populations 1.21756 0.93681 1.02163 1.02137 1.21339 0.97658 0.99947 0.92951 0.90517 1.21902 0.97342 0.97973 0.89213 1.60033 1.64152 1.05921 0.99712 1.21701 0.97826 0.98718 0.90235 1.19711 0.85213 0.87879 0.83638 1.90561 1.42761 1.25946 1.85441 1.42210 1.51071 1.23718 1.06004 1.19433 1.33719 1.07590 0.82697 0.86287 1.25039 0.97858 0.98082 0.95155 1.69621 1.45568 1.38551 0.98376 0.86670 0.80789 0.83282 0.78643 1.19668 1.20151 1.19464 1.21363 0.99880 0.95430 0.83235 1.46062 1.58327 1.28058 1.05919 1.20642 0.79368 0.85918 0.84408 1.90707 1.39209 1.24228 1.86622 1.21266 1.02525 0.99498 0.91259 1.21041 0.94897 0.98978 0.96345 1.21320 0.99280 0.96443 0.99873 1.22874 0.93016 1.01610 1.01801 1.23243 1.04686 0.96922 0.96680 0.92816 0.90412 0.93655 0.90720 0.95262 0.83076 0.89461 0.93754 0.79681 0.91610 0.91328 0.91645 0.76517 0.88997 0.88298 0.91548 0.92461 0.92587 0.88795 0.89156 0.88904 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.95 37.15 0.33 -0.99 16 2 C -0.10 -0.89 2.57 -90.62 -0.23 -1.12 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.07 0.71 5.07 -3.83 -0.02 0.69 16 5 N -0.67 -9.69 5.58 -115.06 -0.64 -10.33 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.09 7.82 -10.98 -0.09 10.01 16 8 O -0.57 -14.99 15.78 5.55 0.09 -14.90 16 9 N -0.59 -14.01 5.09 -10.96 -0.06 -14.06 16 10 C -0.31 -8.64 10.16 -14.94 -0.15 -8.79 16 11 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 14 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.13 1.10 5.06 -4.04 -0.02 1.08 16 19 N -0.73 -5.59 5.28 -60.29 -0.32 -5.91 16 20 C 0.51 4.67 7.68 -10.98 -0.08 4.59 16 21 O -0.53 -6.89 15.39 5.55 0.09 -6.80 16 22 C -0.11 -0.66 5.65 -27.89 -0.16 -0.82 16 23 C -0.11 -0.82 1.60 -154.51 -0.25 -1.06 16 24 C -0.11 -0.80 9.77 37.16 0.36 -0.44 16 25 C -0.16 -1.23 9.10 -26.73 -0.24 -1.47 16 26 C -0.18 -1.08 9.82 -26.73 -0.26 -1.34 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 29 H 0.04 0.34 7.18 -51.93 -0.37 -0.03 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.35 5.27 8.43 -39.29 -0.33 4.94 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 2.17 7.65 -40.82 -0.31 1.85 16 40 H 0.09 0.43 7.93 -51.93 -0.41 0.01 16 41 H 0.10 0.47 7.97 -51.93 -0.41 0.05 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 44 H 0.06 0.34 7.89 -51.92 -0.41 -0.07 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 48 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -34.02 394.34 -8.12 -42.14 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -8.34 Total: 12.10 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.94 Total: 2.13 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.24 Total: -55.23 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.70 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.02 -8.12 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.343 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds