Wall clock time and date at job start Tue Mar 31 2020 05:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48562 * 111.00174 * 2 1 4 4 C 1.54380 * 104.59704 * 200.95953 * 3 2 1 5 5 C 1.54257 * 105.05744 * 23.84991 * 4 3 2 6 6 H 1.09002 * 110.32119 * 240.99898 * 5 4 3 7 7 C 1.53005 * 110.32388 * 118.90252 * 5 4 3 8 8 C 1.50695 * 109.47225 * 174.99970 * 7 5 4 9 9 O 1.21286 * 120.00013 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99901 * 179.97438 * 8 7 5 11 11 C 1.46507 * 119.99942 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47001 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.51848 * 305.09872 * 12 11 10 14 14 C 1.53294 * 109.51238 * 184.99643 * 12 11 10 15 15 N 1.47154 * 108.41914 * 187.75558 * 14 12 11 16 16 C 1.36935 * 120.98181 * 230.54736 * 15 14 12 17 17 H 1.07999 * 119.99965 * 153.28440 * 16 15 14 18 18 C 1.38815 * 119.99997 * 333.28020 * 16 15 14 19 19 N 1.31614 * 120.00002 * 343.56857 * 18 16 15 20 20 Si 1.86801 * 119.99701 * 163.57118 * 18 16 15 21 21 H 1.48500 * 109.47378 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47041 * 120.00233 * 20 18 16 23 23 H 1.48504 * 109.47184 * 239.99864 * 20 18 16 24 24 C 1.47230 * 117.98571 * 50.51930 * 15 14 12 25 25 C 1.53296 * 108.40320 * 309.48715 * 24 15 14 26 26 O 1.42961 * 109.51455 * 65.25161 * 12 11 10 27 27 C 1.48560 * 111.00410 * 244.57981 * 2 1 3 28 28 H 1.09001 * 109.46831 * 59.87929 * 1 2 3 29 29 H 1.09003 * 109.46595 * 179.87215 * 1 2 3 30 30 H 1.08995 * 109.47585 * 299.87509 * 1 2 3 31 31 H 1.08996 * 110.41088 * 82.17438 * 3 2 1 32 32 H 1.09000 * 110.50512 * 319.78817 * 3 2 1 33 33 H 1.08997 * 110.32188 * 264.95483 * 4 3 2 34 34 H 1.09002 * 110.41049 * 142.78852 * 4 3 2 35 35 H 1.08997 * 109.47290 * 54.98967 * 7 5 4 36 36 H 1.09007 * 109.46309 * 294.99538 * 7 5 4 37 37 H 0.96999 * 120.00127 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.46865 * 59.99545 * 11 10 8 39 39 H 1.09000 * 109.46652 * 299.99530 * 11 10 8 40 40 H 1.09001 * 109.68653 * 307.49897 * 14 12 11 41 41 H 1.09005 * 109.68219 * 68.01284 * 14 12 11 42 42 H 0.96999 * 119.99798 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.66530 * 189.75640 * 24 15 14 44 44 H 1.08997 * 109.70575 * 69.23661 * 24 15 14 45 45 H 1.08996 * 109.51289 * 292.38138 * 25 24 15 46 46 H 1.09003 * 109.50945 * 172.23029 * 25 24 15 47 47 H 1.09000 * 110.40846 * 40.25800 * 27 2 1 48 48 H 1.08999 * 110.41048 * 277.82000 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 1 4.1497 -0.7686 -0.9361 7 6 3.7949 0.2399 -2.8182 8 6 3.9099 -1.0565 -3.5779 9 8 3.7289 -2.1116 -3.0078 10 7 4.2138 -1.0434 -4.8909 11 6 4.3261 -2.3037 -5.6294 12 6 4.6764 -2.0098 -7.0894 13 1 3.9412 -1.3231 -7.5091 14 6 4.6716 -3.3170 -7.8902 15 7 5.1904 -3.0380 -9.2387 16 6 4.5077 -3.4433 -10.3544 17 1 4.6233 -2.9049 -11.2835 18 6 3.6670 -4.5461 -10.2912 19 7 3.7617 -5.3889 -9.2848 20 14 2.4016 -4.8340 -11.6348 21 1 2.4981 -3.7508 -12.6461 22 1 2.6603 -6.1432 -12.2863 23 1 1.0406 -4.8372 -11.0405 24 6 6.4649 -2.3096 -9.3516 25 6 6.3823 -1.0515 -8.4796 26 8 5.9767 -1.4199 -7.1592 27 6 2.0015 -0.5953 -1.2526 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3632 -1.0277 -0.0023 30 1 -0.3634 0.5119 0.8910 31 1 2.0078 1.7916 1.0120 32 1 1.4104 2.0228 -0.6591 33 1 4.1483 1.1749 0.2935 34 1 3.6954 2.0993 -1.1696 35 1 4.7446 0.7729 -2.8630 36 1 3.0122 0.8540 -3.2638 37 1 4.3581 -0.1996 -5.3470 38 1 3.3767 -2.8372 -5.5841 39 1 5.1093 -2.9172 -5.1839 40 1 5.3077 -4.0520 -7.3970 41 1 3.6538 -3.7008 -7.9606 42 1 3.1745 -6.1598 -9.2409 43 1 6.6345 -2.0260 -10.3903 44 1 7.2820 -2.9428 -9.0060 45 1 5.6540 -0.3610 -8.9049 46 1 7.3601 -0.5715 -8.4396 47 1 1.4099 -0.2713 -2.1089 48 1 2.0080 -1.6831 -1.1837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753656358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:27 Heat of formation + Delta-G solvation = -57.322275 kcal Electronic energy + Delta-G solvation = -26336.585315 eV Core-core repulsion = 22619.931276 eV Total energy + Delta-G solvation = -3716.654039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06108 -38.87280 -38.26021 -34.82226 -34.32792 -33.55888 -31.42067 -31.03251 -29.99231 -27.86880 -27.14242 -25.72749 -24.61212 -23.30730 -21.77668 -21.41908 -20.71953 -20.04843 -19.51434 -17.30688 -16.94051 -16.12621 -16.02008 -15.86061 -15.41324 -15.16082 -15.05087 -14.41014 -14.34813 -14.12659 -13.91828 -13.55072 -13.28971 -13.21981 -12.93108 -12.84435 -12.57164 -12.35517 -12.03690 -11.70997 -11.60231 -11.54994 -11.34300 -11.13775 -11.02751 -10.88959 -10.75381 -10.69039 -10.44868 -10.28099 -10.06880 -9.72915 -9.65521 -9.09828 -8.85163 -8.73314 -8.59159 -6.79049 -5.88183 -3.32574 2.77588 3.29265 3.33080 3.39188 3.41059 3.82137 4.22527 4.39939 4.40695 4.43776 4.65708 4.89020 4.93519 5.10079 5.16058 5.18391 5.21969 5.31212 5.33207 5.40076 5.44214 5.51452 5.55778 5.61211 5.62641 5.67447 5.77697 5.82659 5.89616 5.98046 6.02018 6.09389 6.16827 6.21617 6.34589 6.47684 6.60069 6.66762 6.74874 6.77463 7.02989 7.44364 7.66487 7.67799 7.80810 8.29310 8.37505 9.06991 9.69769 10.27135 11.19911 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002663 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.652483 B =10512.697908 C =11494.527826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.076 4.076 6 H 0.090 0.910 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.541 6.541 10 N -0.722 5.722 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.055 0.945 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.108 3.892 25 C 0.050 3.950 26 O -0.390 6.390 27 C 0.042 3.958 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.041 0.959 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 15.703 14.509 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.098 4.098 4 C -0.160 4.160 5 C -0.095 4.095 6 H 0.109 0.891 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.418 6.418 10 N -0.373 5.373 11 C 0.008 3.992 12 C -0.004 4.004 13 H 0.073 0.927 14 C 0.026 3.974 15 N -0.319 5.319 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 C -0.085 4.085 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.234 0.766 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.719 14.482 15.544 21.314 hybrid contribution -1.037 0.569 -2.015 2.337 sum -2.756 15.051 13.529 20.424 Atomic orbital electron populations 1.22496 0.88121 1.02358 1.00557 1.65390 1.08106 1.14983 1.35780 1.23127 0.95316 0.90416 1.00950 1.22404 0.96625 0.97270 0.99695 1.21634 0.97727 0.97149 0.92995 0.89132 1.21836 1.03937 0.96036 0.95681 1.20625 0.76605 0.91398 0.82099 1.90706 1.49857 1.32930 1.68329 1.46046 1.71249 1.10359 1.09694 1.21391 1.02114 0.85655 0.90009 1.23138 0.84627 0.98460 0.94183 0.92718 1.21303 1.01742 0.90398 0.83968 1.44073 1.19664 1.65912 1.02220 1.19220 1.21289 1.07782 0.90289 0.91324 1.25083 1.01434 0.95050 0.98059 1.70021 1.39142 1.13080 1.32263 0.86192 0.81390 0.77758 0.81239 1.20230 1.21566 1.21422 1.21619 0.89738 0.92491 0.97945 1.23001 0.98709 0.97174 0.83893 1.87785 1.34140 1.80991 1.28039 1.23202 0.93976 1.01322 0.90020 0.95446 0.91132 0.91443 0.90291 0.93973 0.90726 0.91049 0.88617 0.89206 0.76573 0.90032 0.90764 0.95052 0.88652 0.93420 0.91978 0.95525 0.93908 0.90018 0.94112 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.06 0.57 0.69 16 2 N -0.52 -5.38 5.66 -238.24 -1.35 -6.72 16 3 C 0.03 0.25 6.49 -2.18 -0.01 0.23 16 4 C -0.12 -0.95 6.65 -25.35 -0.17 -1.12 16 5 C -0.08 -0.76 2.66 -89.24 -0.24 -1.00 16 6 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 7 C -0.13 -1.26 4.88 -27.88 -0.14 -1.40 16 8 C 0.51 6.90 7.63 -10.99 -0.08 6.81 16 9 O -0.54 -9.40 14.95 5.55 0.08 -9.32 16 10 N -0.72 -9.85 5.51 -60.29 -0.33 -10.18 16 11 C 0.13 2.21 5.34 -4.04 -0.02 2.19 16 12 C 0.06 1.03 2.81 -26.58 -0.07 0.96 16 13 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.15 3.57 4.72 -3.53 -0.02 3.55 16 15 N -0.59 -14.71 3.05 -171.76 -0.52 -15.23 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 20 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.11 2.23 6.74 -3.49 -0.02 2.20 16 25 C 0.05 0.86 6.99 37.31 0.26 1.12 16 26 O -0.39 -7.12 10.33 -35.23 -0.36 -7.49 16 27 C 0.04 0.48 5.18 -2.19 -0.01 0.47 16 28 H 0.03 0.23 7.98 -51.93 -0.41 -0.19 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.33 7.97 -51.93 -0.41 -0.09 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.45 7.71 -51.93 -0.40 0.05 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.70 7.98 -51.93 -0.41 0.29 16 37 H 0.40 4.60 8.47 -40.82 -0.35 4.25 16 38 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 2.46 6.16 -51.93 -0.32 2.14 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.04 0.46 7.51 -51.93 -0.39 0.07 16 48 H 0.09 1.24 7.74 -51.93 -0.40 0.83 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -31.52 377.08 -9.95 -41.46 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.55 Total: 3.04 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.19 Total: 7.66 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -1.59 Total: -57.26 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.28 Total: -16.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.52 -9.95 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753656358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.859 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds