Wall clock time and date at job start Tue Mar 31 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48567 * 110.99770 * 2 1 4 4 C 1.54375 * 104.59060 * 200.95905 * 3 2 1 5 5 C 1.54255 * 105.06407 * 23.85158 * 4 3 2 6 6 H 1.09002 * 110.32709 * 241.00031 * 5 4 3 7 7 C 1.53005 * 110.32478 * 118.89368 * 5 4 3 8 8 C 1.50705 * 109.46860 * 174.99953 * 7 5 4 9 9 O 1.21278 * 120.00235 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99625 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99631 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46954 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.51478 * 59.89049 * 12 11 10 14 14 C 1.53295 * 109.51135 * 179.97438 * 12 11 10 15 15 N 1.47158 * 108.37998 * 172.27377 * 14 12 11 16 16 C 1.36940 * 120.97855 * 129.44341 * 15 14 12 17 17 H 1.08001 * 120.00057 * 333.93031 * 16 15 14 18 18 C 1.38808 * 119.99573 * 154.20547 * 16 15 14 19 19 N 1.31625 * 119.99689 * 159.34017 * 18 16 15 20 20 Si 1.86797 * 120.00343 * 339.33380 * 18 16 15 21 21 H 1.48501 * 109.47277 * 91.90185 * 20 18 16 22 22 H 1.48507 * 109.47150 * 211.90277 * 20 18 16 23 23 H 1.48499 * 109.47111 * 331.89926 * 20 18 16 24 24 C 1.47148 * 118.03820 * 309.71339 * 15 14 12 25 25 C 1.52873 * 108.60687 * 50.22735 * 24 15 14 26 26 O 1.42960 * 109.55023 * 299.76709 * 12 11 10 27 27 C 1.48554 * 111.00186 * 244.58055 * 2 1 3 28 28 H 1.08996 * 109.46905 * 59.87863 * 1 2 3 29 29 H 1.09003 * 109.46783 * 179.88088 * 1 2 3 30 30 H 1.09000 * 109.47212 * 299.87747 * 1 2 3 31 31 H 1.08997 * 110.41056 * 82.17905 * 3 2 1 32 32 H 1.09004 * 110.50676 * 319.78571 * 3 2 1 33 33 H 1.08999 * 110.32359 * 264.95240 * 4 3 2 34 34 H 1.09008 * 110.32290 * 142.74749 * 4 3 2 35 35 H 1.09003 * 109.47072 * 55.00193 * 7 5 4 36 36 H 1.08996 * 109.47161 * 295.00050 * 7 5 4 37 37 H 0.97004 * 120.00129 * 359.97438 * 10 8 7 38 38 H 1.08993 * 109.47877 * 59.99774 * 11 10 8 39 39 H 1.09005 * 109.46953 * 299.99304 * 11 10 8 40 40 H 1.08996 * 109.68606 * 52.55333 * 14 12 11 41 41 H 1.08993 * 109.71044 * 292.01097 * 14 12 11 42 42 H 0.97000 * 119.99602 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.68426 * 170.01030 * 24 15 14 44 44 H 1.09001 * 109.67965 * 290.56138 * 24 15 14 45 45 H 1.09008 * 109.58505 * 187.92189 * 25 24 15 46 46 H 1.08999 * 109.41025 * 67.84467 * 25 24 15 47 47 H 1.08996 * 110.41134 * 40.25700 * 27 2 1 48 48 H 1.09000 * 110.40832 * 277.81852 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 1 4.1497 -0.7686 -0.9361 7 6 3.7948 0.2400 -2.8183 8 6 3.9099 -1.0565 -3.5779 9 8 3.7282 -2.1115 -3.0080 10 7 4.2147 -1.0434 -4.8907 11 6 4.3260 -2.3037 -5.6293 12 6 4.6789 -2.0099 -7.0889 13 1 5.6281 -1.4761 -7.1337 14 6 4.7962 -3.3281 -7.8625 15 7 4.9501 -3.0150 -9.2922 16 6 5.9588 -3.5730 -10.0314 17 1 6.8705 -3.8911 -9.5476 18 6 5.8117 -3.7245 -11.4033 19 7 6.8741 -3.8663 -12.1673 20 14 4.1062 -3.7274 -12.1652 21 1 3.7425 -2.3456 -12.5700 22 1 4.0987 -4.6110 -13.3587 23 1 3.1215 -4.2278 -11.1726 24 6 3.9918 -2.0799 -9.9025 25 6 3.9103 -0.8268 -9.0307 26 8 3.6519 -1.2081 -7.6773 27 6 2.0014 -0.5953 -1.2526 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3633 -1.0277 -0.0021 30 1 -0.3633 0.5119 0.8911 31 1 2.0078 1.7917 1.0120 32 1 1.4104 2.0229 -0.6592 33 1 4.1483 1.1749 0.2935 34 1 3.6936 2.0996 -1.1700 35 1 4.7446 0.7729 -2.8631 36 1 3.0122 0.8540 -3.2639 37 1 4.3597 -0.1996 -5.3467 38 1 3.3760 -2.8361 -5.5849 39 1 5.1082 -2.9182 -5.1835 40 1 3.8958 -3.9236 -7.7121 41 1 5.6664 -3.8835 -7.5127 42 1 6.7713 -3.9718 -13.1261 43 1 4.3297 -1.8086 -10.9026 44 1 3.0089 -2.5477 -9.9608 45 1 3.1051 -0.1847 -9.3881 46 1 4.8561 -0.2875 -9.0823 47 1 1.4099 -0.2713 -2.1088 48 1 2.0079 -1.6831 -1.1836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753656359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:31 Heat of formation + Delta-G solvation = -51.047108 kcal Electronic energy + Delta-G solvation = -26259.269237 eV Core-core repulsion = 22542.887310 eV Total energy + Delta-G solvation = -3716.381927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19783 -39.09095 -38.47819 -35.12045 -34.46136 -33.64955 -31.78143 -31.33222 -30.12991 -28.15959 -27.38572 -25.95031 -24.81763 -23.21191 -22.10578 -21.49477 -20.87601 -20.24782 -19.78824 -17.44280 -16.97828 -16.37793 -16.15038 -16.09914 -15.56215 -15.46233 -15.39656 -14.51592 -14.31218 -14.19346 -14.13964 -13.94760 -13.63049 -13.33040 -13.29261 -12.81951 -12.45502 -12.44960 -12.24732 -11.94600 -11.78326 -11.76799 -11.65579 -11.44247 -11.28480 -11.10871 -10.90237 -10.77130 -10.48072 -10.34761 -9.92865 -9.79647 -9.59774 -9.48565 -9.03686 -8.80071 -8.64782 -7.10777 -6.04695 -3.42103 2.62500 3.13957 3.23048 3.42056 3.45137 3.75075 3.97954 4.32194 4.35191 4.43306 4.57322 4.70068 4.77995 4.85922 5.02656 5.11853 5.12669 5.16764 5.24702 5.26953 5.31763 5.32566 5.37887 5.47345 5.53933 5.56130 5.59341 5.70327 5.71009 5.75504 5.83238 5.90577 5.96810 6.07418 6.07863 6.13338 6.37846 6.43736 6.45377 6.53482 6.64226 6.70569 7.49951 7.51970 7.78297 8.20278 8.21775 8.78332 9.59340 9.94788 11.10760 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.002350 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.988559 B =11912.751783 C =12089.383066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.076 4.076 6 H 0.090 0.910 7 C -0.135 4.135 8 C 0.509 3.491 9 O -0.541 6.541 10 N -0.722 5.722 11 C 0.131 3.869 12 C 0.062 3.938 13 H 0.064 0.936 14 C 0.125 3.875 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 0.884 3.116 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.271 1.271 24 C 0.088 3.912 25 C 0.050 3.950 26 O -0.386 6.386 27 C 0.042 3.958 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.264 0.736 43 H 0.082 0.918 44 H 0.034 0.966 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.041 0.959 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 13.115 20.674 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.098 4.098 4 C -0.160 4.160 5 C -0.095 4.095 6 H 0.109 0.891 7 C -0.175 4.175 8 C 0.295 3.705 9 O -0.419 6.419 10 N -0.374 5.374 11 C 0.007 3.993 12 C 0.003 3.997 13 H 0.082 0.918 14 C -0.002 4.002 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.106 0.894 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.715 3.285 21 H -0.216 1.216 22 H -0.229 1.229 23 H -0.196 1.196 24 C -0.037 4.037 25 C -0.028 4.028 26 O -0.306 6.306 27 C -0.085 4.085 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.899 12.026 21.472 26.169 hybrid contribution -0.979 0.780 -1.914 2.287 sum -9.877 12.806 19.558 25.378 Atomic orbital electron populations 1.22498 0.88093 1.02342 1.00607 1.65393 1.08134 1.15022 1.35703 1.23134 0.95298 0.90394 1.01013 1.22406 0.96673 0.97230 0.99701 1.21636 0.97735 0.97206 0.92927 0.89143 1.21842 1.04058 0.95925 0.95701 1.20645 0.76389 0.91467 0.82009 1.90701 1.49773 1.32954 1.68446 1.45964 1.71550 1.10292 1.09555 1.21394 1.02762 0.86074 0.89106 1.22857 0.91096 0.94675 0.91096 0.91789 1.21477 1.00489 0.93218 0.85029 1.44342 1.33698 1.49671 1.05473 1.18906 0.93526 1.36747 0.89968 0.89376 1.25240 0.96911 0.99167 0.96214 1.69831 1.28049 1.52149 1.04768 0.86961 0.86385 0.76796 0.78393 1.21578 1.22935 1.19562 1.21944 0.93746 0.90533 0.97477 1.22981 1.00619 0.97017 0.82178 1.87799 1.45160 1.70427 1.27167 1.23196 0.93976 1.01247 0.90089 0.95423 0.91154 0.91406 0.90246 0.93930 0.90679 0.91013 0.88576 0.89038 0.76255 0.90783 0.89987 0.94730 0.90736 0.92612 0.90030 0.94808 0.89542 0.93031 0.94109 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 60.07 0.57 0.68 16 2 N -0.52 -4.95 5.66 -238.23 -1.35 -6.30 16 3 C 0.03 0.22 6.49 -2.18 -0.01 0.21 16 4 C -0.12 -0.85 6.65 -25.35 -0.17 -1.02 16 5 C -0.08 -0.68 2.66 -89.24 -0.24 -0.92 16 6 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 7 C -0.13 -1.10 4.89 -27.88 -0.14 -1.24 16 8 C 0.51 6.05 7.63 -10.98 -0.08 5.96 16 9 O -0.54 -8.36 14.95 5.56 0.08 -8.28 16 10 N -0.72 -8.41 5.45 -60.29 -0.33 -8.74 16 11 C 0.13 1.79 5.37 -4.04 -0.02 1.77 16 12 C 0.06 0.98 2.86 -26.58 -0.08 0.91 16 13 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.12 2.38 6.03 -3.53 -0.02 2.36 16 15 N -0.61 -14.14 2.84 -172.09 -0.49 -14.63 16 16 C -0.26 -7.21 10.09 -15.06 -0.15 -7.36 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 19 N -0.91 -27.22 13.97 55.49 0.78 -26.44 16 20 Si 0.88 22.01 24.30 -169.99 -4.13 17.88 16 21 H -0.29 -6.82 6.58 56.52 0.37 -6.44 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.27 -6.71 6.60 56.52 0.37 -6.34 16 24 C 0.09 1.88 4.36 -3.75 -0.02 1.87 16 25 C 0.05 0.85 6.97 37.09 0.26 1.11 16 26 O -0.39 -6.41 10.15 -35.23 -0.36 -6.76 16 27 C 0.04 0.44 5.18 -2.19 -0.01 0.43 16 28 H 0.03 0.21 7.98 -51.93 -0.41 -0.20 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.30 7.97 -51.93 -0.41 -0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.39 7.71 -51.92 -0.40 -0.01 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 37 H 0.40 3.99 8.36 -40.82 -0.34 3.64 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.38 7.96 -51.93 -0.41 0.96 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.86 4.63 -51.93 -0.24 1.62 16 44 H 0.03 0.73 6.91 -51.93 -0.36 0.38 16 45 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.42 7.51 -51.93 -0.39 0.03 16 48 H 0.09 1.12 7.74 -51.93 -0.40 0.72 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -32.38 370.13 -8.88 -41.26 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.47 Total: 1.09 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.20 Total: 5.35 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -1.39 Total: -56.11 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.27 Total: -15.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.38 -8.88 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753656359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.786 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds