Wall clock time and date at job start Tue Mar 31 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48554 * 111.00337 * 2 1 4 4 C 1.54376 * 104.59875 * 159.04046 * 3 2 1 5 5 C 1.54263 * 105.05811 * 336.14634 * 4 3 2 6 6 H 1.09001 * 110.32471 * 118.89843 * 5 4 3 7 7 C 1.52995 * 110.32433 * 241.10329 * 5 4 3 8 8 C 1.50701 * 109.47429 * 184.99790 * 7 5 4 9 9 O 1.21290 * 119.99593 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00580 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00377 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46909 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.51160 * 304.99486 * 12 11 10 14 14 C 1.53295 * 109.50769 * 184.90217 * 12 11 10 15 15 N 1.47157 * 108.38431 * 187.77201 * 14 12 11 16 16 C 1.36928 * 120.98132 * 230.51197 * 15 14 12 17 17 H 1.07998 * 120.00727 * 26.25202 * 16 15 14 18 18 C 1.38814 * 119.99933 * 206.24684 * 16 15 14 19 19 N 1.31617 * 119.99849 * 16.92233 * 18 16 15 20 20 Si 1.86797 * 120.00300 * 196.92358 * 18 16 15 21 21 H 1.48498 * 109.47254 * 59.99905 * 20 18 16 22 22 H 1.48504 * 109.47609 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47336 * 300.00143 * 20 18 16 24 24 C 1.47147 * 118.03114 * 50.53381 * 15 14 12 25 25 C 1.53294 * 108.38763 * 309.46324 * 24 15 14 26 26 O 1.42950 * 109.51463 * 65.10354 * 12 11 10 27 27 C 1.48558 * 111.00245 * 115.41820 * 2 1 3 28 28 H 1.09005 * 109.47066 * 59.87607 * 1 2 3 29 29 H 1.08998 * 109.47360 * 179.87048 * 1 2 3 30 30 H 1.08996 * 109.47247 * 299.87923 * 1 2 3 31 31 H 1.09000 * 110.41193 * 40.26022 * 3 2 1 32 32 H 1.09002 * 110.41329 * 277.81861 * 3 2 1 33 33 H 1.08999 * 110.32774 * 95.03855 * 4 3 2 34 34 H 1.08999 * 110.32799 * 217.15194 * 4 3 2 35 35 H 1.08997 * 109.47494 * 305.00367 * 7 5 4 36 36 H 1.09001 * 109.47387 * 65.00343 * 7 5 4 37 37 H 0.97007 * 119.99614 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47053 * 300.00095 * 11 10 8 39 39 H 1.08994 * 109.46879 * 60.00351 * 11 10 8 40 40 H 1.09001 * 109.68120 * 307.49594 * 14 12 11 41 41 H 1.09001 * 109.68545 * 68.04872 * 14 12 11 42 42 H 0.97004 * 119.99906 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.68614 * 69.19267 * 24 15 14 44 44 H 1.09007 * 109.68177 * 189.70677 * 24 15 14 45 45 H 1.08994 * 109.51470 * 172.22970 * 25 24 15 46 46 H 1.09000 * 109.51351 * 292.32903 * 25 24 15 47 47 H 1.09005 * 110.41488 * 82.17455 * 27 2 1 48 48 H 1.09007 * 110.40886 * 319.74143 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3868 0.0000 4 6 3.4432 1.2501 0.5344 5 6 3.4432 -0.0540 1.3585 6 1 4.1483 -0.7694 0.9352 7 6 3.7947 0.2399 2.8183 8 6 3.9096 -1.0564 3.5781 9 8 3.7287 -2.1116 3.0080 10 7 4.2144 -1.0434 4.8908 11 6 4.3267 -2.3037 5.6294 12 6 4.6781 -2.0097 7.0892 13 1 5.5809 -1.4001 7.1308 14 6 4.9160 -3.3282 7.8340 15 7 5.0659 -3.0311 9.2675 16 6 6.1281 -3.5184 9.9810 17 1 7.0562 -3.7485 9.4788 18 6 6.0122 -3.7168 11.3500 19 7 4.8220 -3.7623 11.9099 20 14 7.5455 -3.9190 12.3976 21 1 8.3884 -2.7019 12.2816 22 1 7.1533 -4.1166 13.8163 23 1 8.3138 -5.0997 11.9279 24 6 4.0404 -2.1951 9.9114 25 6 3.8452 -0.9318 9.0653 26 8 3.5982 -1.3066 7.7080 27 6 2.0014 -0.5953 1.2526 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3634 -1.0276 -0.0023 30 1 -0.3633 0.5119 0.8910 31 1 1.4099 2.0212 0.6602 32 1 2.0079 1.7916 -1.0121 33 1 4.1483 1.1746 -0.2934 34 1 3.6943 2.1004 1.1684 35 1 4.7444 0.7728 2.8631 36 1 3.0121 0.8540 3.2639 37 1 4.3595 -0.1995 5.3467 38 1 3.3770 -2.8367 5.5849 39 1 5.1092 -2.9175 5.1835 40 1 4.0655 -3.9932 7.6840 41 1 5.8237 -3.8023 7.4605 42 1 4.7409 -3.9012 12.8665 43 1 3.1017 -2.7460 9.9705 44 1 4.3678 -1.9193 10.9138 45 1 2.9956 -0.3656 9.4470 46 1 4.7442 -0.3174 9.1156 47 1 2.0078 -1.6831 1.1839 48 1 1.4098 -0.2712 2.1089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753656360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:34 Heat of formation + Delta-G solvation = -57.217987 kcal Electronic energy + Delta-G solvation = -26161.766091 eV Core-core repulsion = 22445.116574 eV Total energy + Delta-G solvation = -3716.649517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14027 -38.92821 -38.29961 -34.93119 -34.30531 -33.61294 -31.63011 -30.82474 -30.02609 -27.98537 -27.20699 -25.72847 -24.66074 -23.20787 -21.89397 -21.46037 -20.80307 -20.09693 -19.54742 -17.37786 -16.89453 -16.20617 -16.03240 -16.02100 -15.38828 -15.33189 -14.98019 -14.49987 -14.38557 -14.06290 -13.94171 -13.66831 -13.28941 -13.25168 -13.01991 -12.80845 -12.64322 -12.40628 -12.12663 -11.74859 -11.62948 -11.60184 -11.39263 -11.15604 -11.07950 -10.87115 -10.76512 -10.73923 -10.44413 -10.32301 -10.02077 -9.84743 -9.65474 -9.11275 -8.97001 -8.76989 -8.57799 -6.79782 -5.88068 -3.31850 2.67877 3.20941 3.32566 3.38483 3.39308 3.78237 4.19319 4.35545 4.38304 4.40305 4.60922 4.82356 4.89110 5.05666 5.10517 5.15432 5.17605 5.27771 5.29847 5.35596 5.40440 5.45632 5.47644 5.51316 5.59168 5.62547 5.73795 5.76733 5.84223 5.94194 6.00869 6.11211 6.11860 6.25503 6.32766 6.44604 6.52420 6.56733 6.71753 6.73667 7.06042 7.47186 7.56206 7.66684 7.81172 8.26945 8.29533 9.07399 9.70075 10.26911 11.20078 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.002231 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.237915 B =12548.379112 C =12713.193536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.075 4.075 6 H 0.090 0.910 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.542 6.542 10 N -0.722 5.722 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.058 0.942 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C 0.042 3.958 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.256 0.744 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 12.762 -19.250 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.098 4.098 4 C -0.160 4.160 5 C -0.095 4.095 6 H 0.108 0.892 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.419 6.419 10 N -0.373 5.373 11 C 0.006 3.994 12 C 0.005 3.995 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.085 4.085 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.657 11.671 -20.021 23.638 hybrid contribution 0.644 0.680 1.923 2.139 sum -4.013 12.351 -18.099 22.276 Atomic orbital electron populations 1.22496 0.88091 1.02360 1.00592 1.65384 1.08137 1.15024 1.35733 1.23133 0.95300 0.90422 1.00980 1.22404 0.96663 0.97244 0.99695 1.21630 0.97748 0.97165 0.92942 0.89161 1.21837 1.04022 0.95974 0.95691 1.20637 0.76436 0.91439 0.82054 1.90701 1.49833 1.32950 1.68463 1.46004 1.71440 1.10333 1.09556 1.21402 1.02695 0.85876 0.89401 1.22801 0.89906 0.96142 0.90622 0.92411 1.21447 0.99680 0.92860 0.86596 1.44061 1.26945 1.57094 1.03673 1.19152 0.90221 1.38870 0.90359 0.91365 1.25056 0.96554 0.99960 0.98082 1.70024 1.21075 1.52697 1.10894 0.86308 0.82501 0.78194 0.79404 1.20969 1.21535 1.20762 1.21444 0.91975 0.88482 0.96751 1.23319 0.99691 0.98585 0.82210 1.87782 1.40638 1.75637 1.26888 1.23201 0.93979 1.01258 0.90081 0.91428 0.91144 0.95406 0.93929 0.90252 0.90720 0.91025 0.88626 0.89041 0.76374 0.90772 0.90192 0.95241 0.91771 0.93408 0.95376 0.88755 0.90071 0.94123 0.89079 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 60.06 0.57 0.68 16 2 N -0.52 -5.11 5.66 -238.24 -1.35 -6.46 16 3 C 0.03 0.23 6.49 -2.19 -0.01 0.22 16 4 C -0.12 -0.89 6.64 -25.35 -0.17 -1.06 16 5 C -0.08 -0.71 2.66 -89.24 -0.24 -0.94 16 6 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 7 C -0.13 -1.16 4.89 -27.88 -0.14 -1.30 16 8 C 0.51 6.35 7.63 -10.99 -0.08 6.26 16 9 O -0.54 -8.70 14.95 5.55 0.08 -8.62 16 10 N -0.72 -8.96 5.50 -60.29 -0.33 -9.29 16 11 C 0.13 1.92 5.35 -4.04 -0.02 1.90 16 12 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 15 N -0.59 -14.69 3.05 -171.83 -0.52 -15.22 16 16 C -0.26 -6.91 9.65 -15.06 -0.15 -7.05 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 19 N -0.90 -25.76 11.14 55.49 0.62 -25.14 16 20 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.14 3.27 5.45 -3.54 -0.02 3.25 16 25 C 0.04 0.74 6.98 37.31 0.26 1.01 16 26 O -0.39 -7.13 10.33 -35.23 -0.36 -7.49 16 27 C 0.04 0.45 5.18 -2.19 -0.01 0.44 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.22 7.97 -51.93 -0.41 -0.19 16 31 H 0.04 0.31 7.97 -51.93 -0.41 -0.10 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.41 7.71 -51.93 -0.40 0.01 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.68 7.98 -51.93 -0.41 0.27 16 37 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.16 7.74 -51.93 -0.40 0.76 16 48 H 0.04 0.44 7.51 -51.93 -0.39 0.05 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -31.44 377.04 -9.95 -41.39 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.55 Total: 2.05 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.19 Total: 6.90 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -1.59 Total: -56.11 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.28 Total: -16.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.44 -9.95 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753656360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.833 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds