Wall clock time and date at job start Tue Mar 31 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47015 * 111.00450 * 2 1 4 4 C 1.53097 * 109.26000 * 182.39187 * 3 2 1 5 5 O 1.43014 * 109.29460 * 303.12960 * 4 3 2 6 6 C 1.43100 * 113.68506 * 58.64921 * 5 4 3 7 7 H 1.09001 * 109.49563 * 61.30239 * 6 5 4 8 8 C 1.50705 * 109.49087 * 181.41492 * 6 5 4 9 9 O 1.21281 * 119.99737 * 4.80210 * 8 6 5 10 10 N 1.34772 * 119.99821 * 184.80477 * 8 6 5 11 11 C 1.46508 * 120.00028 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47098 * 175.12432 * 11 10 8 13 13 N 1.46501 * 110.01968 * 303.90710 * 12 11 10 14 14 C 1.36933 * 119.99926 * 301.45734 * 13 12 11 15 15 H 1.08005 * 119.99984 * 354.61450 * 14 13 12 16 16 C 1.38811 * 119.99926 * 174.60506 * 14 13 12 17 17 N 1.31614 * 120.00348 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46927 * 60.00116 * 18 16 14 20 20 H 1.48492 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46899 * 300.00566 * 18 16 14 22 22 C 1.54267 * 110.02975 * 182.45938 * 12 11 10 23 23 C 1.54883 * 104.19689 * 217.10617 * 22 12 11 24 24 C 1.54890 * 102.74759 * 37.94704 * 23 22 12 25 25 C 1.53882 * 110.02891 * 65.29946 * 12 11 10 26 26 C 1.47018 * 111.00261 * 123.63900 * 2 1 3 27 27 H 1.09000 * 109.46890 * 63.95310 * 1 2 3 28 28 H 1.08998 * 109.47272 * 183.95050 * 1 2 3 29 29 H 1.09001 * 109.46696 * 303.95315 * 1 2 3 30 30 H 1.09007 * 109.50028 * 62.45642 * 3 2 1 31 31 H 1.08994 * 109.53970 * 302.35213 * 3 2 1 32 32 H 1.09001 * 109.50440 * 63.08902 * 4 3 2 33 33 H 1.09002 * 109.50126 * 183.17353 * 4 3 2 34 34 H 0.97004 * 120.00487 * 0.02562 * 10 8 6 35 35 H 1.08998 * 109.47074 * 295.13184 * 11 10 8 36 36 H 1.09002 * 109.46790 * 55.12679 * 11 10 8 37 37 H 0.97000 * 119.99478 * 121.46181 * 13 12 11 38 38 H 0.96992 * 120.00292 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.48847 * 335.79222 * 22 12 11 40 40 H 1.09005 * 110.48110 * 98.43058 * 22 12 11 41 41 H 1.08996 * 110.76081 * 279.63485 * 23 22 12 42 42 H 1.09003 * 110.75979 * 156.25786 * 23 22 12 43 43 H 1.09003 * 110.48423 * 203.37757 * 24 23 22 44 44 H 1.08996 * 110.49075 * 80.73444 * 24 23 22 45 45 H 1.09002 * 110.02578 * 238.56375 * 25 12 11 46 46 H 1.08995 * 110.03202 * 359.94588 * 25 12 11 47 47 H 1.08997 * 109.50540 * 297.54376 * 26 2 1 48 48 H 1.09008 * 109.50379 * 57.62390 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0184 0.5578 1.0403 6 6 3.5250 -0.7850 1.0708 7 1 3.8385 -1.3084 0.1676 8 6 4.0742 -1.4952 2.2813 9 8 4.7437 -0.8869 3.0893 10 7 3.8214 -2.8060 2.4659 11 6 4.3558 -3.4965 3.6424 12 6 3.8264 -4.9317 3.6756 13 7 2.3616 -4.9266 3.6505 14 6 1.6623 -4.2759 4.6317 15 1 2.1860 -3.8410 5.4702 16 6 0.2804 -4.1751 4.5484 17 7 -0.3579 -4.7053 3.5268 18 14 -0.6736 -3.2867 5.8865 19 1 -0.2152 -1.8766 5.9681 20 1 -2.1230 -3.3188 5.5655 21 1 -0.4406 -3.9592 7.1899 22 6 4.3319 -5.6521 4.9426 23 6 4.6053 -7.1020 4.4716 24 6 5.1891 -6.8958 3.0518 25 6 4.3715 -5.7224 2.4733 26 6 1.9959 -0.7603 1.1427 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8525 30 1 1.6828 1.8825 0.9111 31 1 1.6135 1.9098 -0.8677 32 1 3.8386 0.8643 -0.9965 33 1 3.9222 2.3398 -0.0037 34 1 3.2863 -3.2926 1.8195 35 1 5.4445 -3.5118 3.5914 36 1 4.0417 -2.9724 4.5451 37 1 1.8872 -5.3843 2.9389 38 1 -1.3235 -4.6351 3.4688 39 1 5.2499 -5.1889 5.3043 40 1 3.5665 -5.6410 5.7187 41 1 3.6794 -7.6755 4.4289 42 1 5.3328 -7.5886 5.1213 43 1 5.0493 -7.7924 2.4479 44 1 6.2455 -6.6335 3.1080 45 1 3.5461 -6.1032 1.8718 46 1 5.0123 -5.0835 1.8658 47 1 1.6828 -0.2844 2.0719 48 1 1.6127 -1.7803 1.1090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753663126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:45 Heat of formation + Delta-G solvation = -65.880544 kcal Electronic energy + Delta-G solvation = -27828.878474 eV Core-core repulsion = 24111.853321 eV Total energy + Delta-G solvation = -3717.025153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12121 -38.89285 -37.82885 -35.63877 -34.06151 -33.33727 -31.61151 -30.53448 -28.88984 -28.26901 -27.67686 -25.30385 -24.14044 -23.96976 -23.05583 -20.82910 -20.39044 -19.66836 -18.65097 -17.24803 -16.95187 -16.53319 -15.93338 -15.66857 -15.37734 -14.95161 -14.81886 -14.68778 -14.40308 -14.15480 -13.82489 -13.69456 -13.34199 -13.07184 -12.71506 -12.58901 -12.34123 -12.04208 -11.82454 -11.66339 -11.46874 -11.36090 -11.12631 -10.82153 -10.75727 -10.72659 -10.65413 -10.55393 -10.25824 -10.14631 -9.89326 -9.69322 -9.67050 -9.29741 -8.93050 -8.48286 -8.43161 -7.04123 -5.83836 -3.12501 2.99098 3.19822 3.39528 3.44003 3.46712 3.78241 4.25961 4.53896 4.80237 4.90355 4.95960 5.05928 5.09798 5.12173 5.19873 5.22528 5.32706 5.44845 5.49439 5.53534 5.59471 5.66335 5.66805 5.76127 5.84014 5.91137 5.92957 5.93683 5.96145 6.08321 6.17142 6.25142 6.30349 6.42594 6.54896 6.59298 6.76365 6.81025 6.82440 6.86615 6.97623 7.03149 7.14355 7.68056 8.04553 8.34749 8.70278 9.46855 10.00535 10.36288 11.37857 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.005395 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.098622 B = 5189.013162 C = 6818.585854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.013 3.987 4 C 0.063 3.937 5 O -0.357 6.357 6 C 0.081 3.919 7 H 0.088 0.912 8 C 0.518 3.482 9 O -0.535 6.535 10 N -0.695 5.695 11 C 0.122 3.878 12 C 0.189 3.811 13 N -0.710 5.710 14 C -0.231 4.231 15 H 0.068 0.932 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.132 4.132 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.126 4.126 26 C 0.029 3.971 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.402 0.598 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 3.919 -8.986 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.115 4.115 4 C -0.014 4.014 5 O -0.275 6.275 6 C 0.019 3.981 7 H 0.106 0.894 8 C 0.301 3.699 9 O -0.411 6.411 10 N -0.347 5.347 11 C -0.004 4.004 12 C 0.097 3.903 13 N -0.352 5.352 14 C -0.362 4.362 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.579 5.579 18 Si 0.729 3.271 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.164 4.164 26 C -0.099 4.099 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.237 0.763 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.450 4.301 -8.558 12.135 hybrid contribution -1.714 0.523 0.794 1.960 sum 5.736 4.824 -7.765 10.792 Atomic orbital electron populations 1.22393 0.86314 1.02954 1.00700 1.62240 1.08719 1.13176 1.42296 1.22849 0.96619 0.90302 1.01772 1.22702 0.92237 0.96470 0.89996 1.88132 1.69146 1.22108 1.48117 1.21954 0.93282 0.85153 0.97712 0.89433 1.19891 0.80991 0.82423 0.86562 1.90677 1.39293 1.65983 1.45158 1.45615 1.53690 1.08806 1.26549 1.21904 0.95936 0.94564 0.88026 1.20468 0.86141 0.90697 0.93033 1.42536 0.98075 1.63423 1.31118 1.19038 0.89086 1.27429 1.00654 0.91360 1.24643 0.96533 1.01273 0.97873 1.69629 1.07774 1.49916 1.30584 0.86412 0.79157 0.79784 0.81742 1.21394 1.21807 1.21270 1.22821 1.00222 0.94830 0.99304 1.22383 1.00105 0.97477 0.95486 1.22299 0.98845 0.97824 0.96851 1.22436 0.99425 0.96820 0.97740 1.22700 0.93599 1.00949 0.92661 0.91249 0.90464 0.95344 0.93782 0.89608 0.92206 0.88164 0.76279 0.93021 0.91422 0.78103 0.93583 0.92894 0.90293 0.91409 0.92737 0.92365 0.92275 0.91267 0.92015 0.93065 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.63 60.07 0.58 0.88 16 2 N -0.54 -7.23 4.99 -242.59 -1.21 -8.44 16 3 C 0.01 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.06 0.75 7.00 37.21 0.26 1.01 16 5 O -0.36 -5.88 10.02 -55.06 -0.55 -6.43 16 6 C 0.08 1.28 3.22 -27.83 -0.09 1.19 16 7 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 8 C 0.52 9.72 7.18 -10.99 -0.08 9.64 16 9 O -0.53 -12.09 16.50 -14.28 -0.24 -12.32 16 10 N -0.70 -12.18 5.06 -60.29 -0.31 -12.49 16 11 C 0.12 2.22 3.99 -4.04 -0.02 2.20 16 12 C 0.19 3.32 0.68 -130.70 -0.09 3.24 16 13 N -0.71 -15.39 4.76 -46.19 -0.22 -15.61 16 14 C -0.23 -5.81 8.39 -15.06 -0.13 -5.94 16 15 H 0.07 1.75 7.23 -52.48 -0.38 1.37 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 18 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.13 -2.22 5.94 -25.07 -0.15 -2.37 16 23 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 24 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 25 C -0.13 -1.86 5.80 -25.61 -0.15 -2.01 16 26 C 0.03 0.46 4.89 -3.71 -0.02 0.44 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.62 7.86 -40.82 -0.32 6.30 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.44 7.49 -51.93 -0.39 1.05 16 37 H 0.38 8.92 7.28 -40.82 -0.30 8.63 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 40 H 0.08 1.53 7.12 -51.93 -0.37 1.16 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 46 H 0.06 0.84 7.54 -51.93 -0.39 0.45 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.10 1.66 7.98 -51.92 -0.41 1.24 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.29 376.92 -9.88 -40.17 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -8.41 Total: 13.26 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.33 Total: 4.49 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.01 Total: -61.66 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.79 Total: -18.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.29 -9.88 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.714 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds