Wall clock time and date at job start Tue Mar 31 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00492 * 2 1 4 4 C 1.38746 * 120.05291 * 359.71600 * 3 2 1 5 5 C 1.38129 * 119.94330 * 179.74777 * 4 3 2 6 6 C 1.38279 * 120.05316 * 0.53712 * 5 4 3 7 7 C 1.38252 * 120.11389 * 359.73925 * 6 5 4 8 8 C 1.38160 * 120.05165 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02436 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47097 * 186.02894 * 9 8 7 11 11 C 1.50703 * 109.47176 * 306.03181 * 9 8 7 12 12 H 1.07997 * 119.99661 * 55.27504 * 11 9 8 13 13 C 1.37876 * 119.99667 * 235.27872 * 11 9 8 14 14 N 1.31514 * 119.99522 * 173.33904 * 13 11 9 15 15 Si 1.86795 * 120.00413 * 353.33793 * 13 11 9 16 16 H 1.48508 * 109.47196 * 86.01314 * 15 13 11 17 17 H 1.48495 * 109.47396 * 206.01393 * 15 13 11 18 18 H 1.48499 * 109.47202 * 326.01670 * 15 13 11 19 19 C 1.50697 * 109.47288 * 66.03424 * 9 8 7 20 20 C 1.38258 * 119.92520 * 292.12362 * 19 9 8 21 21 C 1.38237 * 120.14257 * 179.97438 * 20 19 9 22 22 C 1.38549 * 120.03149 * 0.02562 * 21 20 19 23 23 C 1.39273 * 119.82292 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.93225 * 111.84474 * 19 9 8 25 25 O 1.36502 * 108.63579 * 180.02562 * 23 22 21 26 26 C 1.43988 * 105.48650 * 342.71904 * 25 23 22 27 27 O 1.36499 * 131.53667 * 179.97438 * 22 21 20 28 28 H 1.08993 * 109.47668 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47081 * 300.00637 * 1 2 3 30 30 H 1.09006 * 109.46509 * 60.00049 * 1 2 3 31 31 H 1.08006 * 120.03383 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.97100 * 180.29645 * 5 4 3 33 33 H 1.08008 * 119.94724 * 179.76850 * 6 5 4 34 34 H 1.07996 * 119.96695 * 180.02562 * 7 6 5 35 35 H 0.97010 * 119.99598 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.93081 * 359.95092 * 20 19 9 37 37 H 1.07993 * 119.98727 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.98314 * 0.02562 * 24 19 9 39 39 H 1.08999 * 110.57425 * 268.55446 * 26 25 23 40 40 H 1.08995 * 110.57283 * 145.68224 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3752 -0.0060 5 6 1.9211 3.6047 -0.0007 6 6 3.3021 3.6756 -0.0007 7 6 4.0561 2.5169 -0.0005 8 6 3.4312 1.2847 0.0002 9 6 4.2537 0.0220 0.0009 10 1 3.5957 -0.8404 -0.1065 11 6 5.2283 0.0566 -1.1481 12 1 5.9117 0.8864 -1.2517 13 6 5.2472 -0.9711 -2.0671 14 7 6.0030 -0.8802 -3.1395 15 14 4.1997 -2.4924 -1.7888 16 1 2.8344 -2.2580 -2.3241 17 1 4.8131 -3.6504 -2.4873 18 1 4.1185 -2.7782 -0.3339 19 6 5.0115 -0.0832 1.2993 20 6 6.0271 0.8120 1.5796 21 6 6.7248 0.7199 2.7694 22 6 6.4076 -0.2710 3.6843 23 6 5.3845 -1.1727 3.4019 24 6 4.6857 -1.0708 2.2099 25 8 5.2671 -2.0410 4.4486 26 6 6.4949 -1.9171 5.1905 27 8 6.9315 -0.5747 4.9076 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 0.2129 2.3204 -0.0102 32 1 1.3342 4.5114 -0.0005 33 1 3.7925 4.6379 -0.0003 34 1 5.1345 2.5750 -0.0001 35 1 6.0161 -1.6031 -3.7863 36 1 6.2763 1.5846 0.8673 37 1 7.5180 1.4202 2.9856 38 1 3.8891 -1.7662 1.9901 39 1 7.2299 -2.6408 4.8383 40 1 6.3120 -2.0438 6.2575 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000169016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:46 Heat of formation + Delta-G solvation = -42.926279 kcal Electronic energy + Delta-G solvation = -25906.304700 eV Core-core repulsion = 22231.739330 eV Total energy + Delta-G solvation = -3674.565370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72479 -39.80512 -37.85169 -36.70202 -35.90290 -33.83225 -31.79769 -30.18943 -29.53926 -29.31277 -27.36328 -26.69616 -25.35639 -23.50624 -22.53171 -21.94002 -21.40694 -20.00438 -17.83119 -17.41944 -17.21503 -17.01231 -16.35871 -15.87072 -15.58744 -15.31531 -15.08846 -14.25178 -14.16646 -13.96864 -13.81114 -13.40128 -13.13961 -12.94667 -12.83479 -12.63008 -12.46897 -12.20694 -12.09069 -11.82645 -11.48950 -11.08875 -10.94173 -10.86824 -10.68871 -10.58163 -10.37565 -9.88829 -9.78764 -9.27796 -8.64969 -8.26641 -8.18262 -7.52481 -7.42598 -6.19097 -4.19304 1.74037 1.80674 1.96239 2.04912 3.13929 3.29762 3.35308 3.39702 3.75345 3.77490 4.21691 4.36026 4.38635 4.87416 4.98858 5.04370 5.16360 5.20890 5.31111 5.37253 5.40566 5.54571 5.59081 5.65923 5.67743 5.76821 5.89877 5.96391 6.01832 6.17576 6.27344 6.42941 6.58058 6.63408 6.67050 6.86746 6.92235 7.03739 7.08207 7.16512 7.35846 7.40294 7.57849 7.65965 7.94228 8.36242 8.82869 9.42264 10.92238 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.006076 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.383540 B = 4607.209922 C = 5448.993123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.106 4.106 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.059 4.059 9 C 0.084 3.916 10 H 0.064 0.936 11 C -0.502 4.502 12 H 0.083 0.917 13 C 0.080 3.920 14 N -0.888 5.888 15 Si 0.870 3.130 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.261 1.261 19 C -0.019 4.019 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.001 4.001 23 C 0.025 3.975 24 C -0.109 4.109 25 O -0.316 6.316 26 C 0.214 3.786 27 O -0.317 6.317 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 2.979 10.711 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.068 3.932 4 C -0.230 4.230 5 C -0.125 4.125 6 C -0.177 4.177 7 C -0.089 4.089 8 C -0.060 4.060 9 C 0.065 3.935 10 H 0.082 0.918 11 C -0.539 4.539 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.524 5.524 15 Si 0.697 3.303 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.186 1.186 19 C -0.019 4.019 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.044 4.044 23 C -0.019 4.019 24 C -0.128 4.128 25 O -0.233 6.233 26 C 0.102 3.898 27 O -0.234 6.234 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.551 2.650 10.739 12.376 hybrid contribution -0.683 -0.957 0.128 1.182 sum -6.234 1.693 10.868 12.643 Atomic orbital electron populations 1.22953 0.79679 1.03250 1.00761 1.86116 1.20213 1.27267 1.89014 1.18900 0.92113 0.83753 0.98407 1.21039 0.99134 0.92600 1.10188 1.20684 0.94662 0.96301 1.00813 1.20981 0.93814 0.98147 1.04714 1.20943 1.00187 0.90792 0.97004 1.19713 0.89778 0.97119 0.99372 1.17238 0.93592 0.92274 0.90414 0.91755 1.20796 1.18504 1.08348 1.06263 0.89918 1.25029 0.94875 0.98061 0.94415 1.69885 1.39389 1.33022 1.10072 0.86928 0.81090 0.83051 0.79236 1.19621 1.21550 1.18616 1.20355 0.95292 0.91752 0.94550 1.20899 0.95257 1.00082 0.95090 1.20034 1.01534 0.98104 0.92181 1.19640 0.97631 1.00416 0.86746 1.19741 0.98847 0.92793 0.90474 1.20068 1.01631 1.01437 0.89662 1.87294 1.38167 1.60738 1.37094 1.25443 0.83090 0.83191 0.98081 1.87263 1.72451 1.31352 1.32328 0.88891 0.93172 0.93070 0.86463 0.86902 0.86709 0.85223 0.92369 0.84297 0.85550 0.85630 0.90637 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.31 -5.90 9.27 -19.43 -0.18 -6.08 16 3 C 0.11 2.18 6.66 -39.22 -0.26 1.92 16 4 C -0.21 -3.44 9.04 -39.43 -0.36 -3.79 16 5 C -0.11 -1.63 10.04 -39.61 -0.40 -2.02 16 6 C -0.16 -2.55 10.04 -39.56 -0.40 -2.95 16 7 C -0.07 -1.33 8.37 -39.60 -0.33 -1.67 16 8 C -0.06 -1.22 4.78 -104.48 -0.50 -1.72 16 9 C 0.08 1.91 2.07 -94.07 -0.19 1.71 16 10 H 0.06 1.53 3.48 -51.93 -0.18 1.35 16 11 C -0.50 -13.08 7.78 -34.44 -0.27 -13.35 16 12 H 0.08 2.25 7.13 -52.49 -0.37 1.88 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 15 Si 0.87 21.25 26.94 -169.99 -4.58 16.67 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.17 6.82 56.52 0.39 -5.79 16 19 C -0.02 -0.39 4.77 -104.62 -0.50 -0.89 16 20 C -0.10 -1.81 8.32 -39.57 -0.33 -2.14 16 21 C -0.10 -1.74 10.06 -39.47 -0.40 -2.14 16 22 C 0.00 -0.02 7.15 -39.08 -0.28 -0.30 16 23 C 0.03 0.48 7.15 -39.08 -0.28 0.20 16 24 C -0.11 -2.23 9.68 -39.47 -0.38 -2.61 16 25 O -0.32 -5.47 11.40 -45.70 -0.52 -5.99 16 26 C 0.21 2.86 8.89 101.05 0.90 3.76 16 27 O -0.32 -5.21 11.40 -45.69 -0.52 -5.73 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 30 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.12 1.58 6.30 -52.48 -0.33 1.25 16 32 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.13 2.33 5.26 -52.49 -0.28 2.06 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 2.50 5.34 -52.49 -0.28 2.22 16 37 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.13 2.52 7.96 -52.49 -0.42 2.10 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -31.36 331.78 -7.45 -38.81 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.34 Total: 4.96 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.08 Total: -22.50 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.77 Total: -25.14 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.22 Total: -17.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.58 Total: 16.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.36 -7.45 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.112 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds