Wall clock time and date at job start Tue Mar 31 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35890 * 117.00567 * 2 1 4 4 C 1.38759 * 120.05465 * 359.72584 * 3 2 1 5 5 C 1.38121 * 119.94259 * 179.69948 * 4 3 2 6 6 C 1.38282 * 120.05680 * 0.59754 * 5 4 3 7 7 C 1.38243 * 120.11326 * 359.67843 * 6 5 4 8 8 C 1.38164 * 120.05433 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.02994 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47513 * 173.74614 * 9 8 7 11 11 C 1.50704 * 109.46842 * 53.74516 * 9 8 7 12 12 H 1.07996 * 120.00139 * 329.67415 * 11 9 8 13 13 C 1.37882 * 119.99890 * 149.67575 * 11 9 8 14 14 N 1.31519 * 120.00140 * 353.57874 * 13 11 9 15 15 Si 1.86794 * 120.00151 * 173.58363 * 13 11 9 16 16 H 1.48505 * 109.47077 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47410 * 119.99704 * 15 13 11 18 18 H 1.48500 * 109.47201 * 239.99977 * 15 13 11 19 19 C 1.50701 * 109.47250 * 293.74835 * 9 8 7 20 20 C 1.38255 * 119.92541 * 248.52383 * 19 9 8 21 21 C 1.38242 * 120.13844 * 179.69090 * 20 19 9 22 22 C 1.38542 * 120.02840 * 0.58993 * 21 20 19 23 23 C 1.39261 * 119.83078 * 359.68638 * 22 21 20 24 24 C 1.38233 * 119.92854 * 68.79477 * 19 9 8 25 25 O 1.36500 * 108.64513 * 179.97438 * 23 22 21 26 26 C 1.43996 * 105.48077 * 342.72225 * 25 23 22 27 27 O 1.36503 * 131.52875 * 179.68689 * 22 21 20 28 28 H 1.08994 * 109.47018 * 59.99677 * 1 2 3 29 29 H 1.09004 * 109.46688 * 299.99829 * 1 2 3 30 30 H 1.08995 * 109.47589 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02490 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.97202 * 180.29853 * 5 4 3 33 33 H 1.08001 * 119.94636 * 179.69947 * 6 5 4 34 34 H 1.07998 * 119.97194 * 179.97438 * 7 6 5 35 35 H 0.96988 * 120.00109 * 180.02562 * 14 13 11 36 36 H 1.07993 * 119.92747 * 359.97438 * 20 19 9 37 37 H 1.07999 * 119.98630 * 180.27258 * 21 20 19 38 38 H 1.08002 * 119.98519 * 0.02562 * 24 19 9 39 39 H 1.09004 * 110.57123 * 268.55411 * 26 25 23 40 40 H 1.09001 * 110.57315 * 145.68186 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2915 2.3752 -0.0057 5 6 1.9211 3.6046 0.0005 6 6 3.3021 3.6756 0.0001 7 6 4.0561 2.5169 0.0000 8 6 3.4312 1.2846 -0.0001 9 6 4.2537 0.0219 -0.0007 10 1 3.5961 -0.8401 0.1112 11 6 5.2323 0.0594 1.1447 12 1 5.6199 1.0052 1.4931 13 6 5.6328 -1.1141 1.7479 14 7 5.0682 -2.2530 1.4105 15 14 6.9772 -1.0862 3.0445 16 1 7.4461 0.3090 3.2415 17 1 6.4412 -1.6142 4.3248 18 1 8.1135 -1.9314 2.5975 19 6 5.0068 -0.0864 -1.3015 20 6 4.6726 -1.0716 -2.2121 21 6 5.3564 -1.1709 -3.4094 22 6 6.3871 -0.2901 -3.6944 23 6 6.7275 0.6986 -2.7747 24 6 6.0340 0.7960 -1.5792 25 8 7.7625 1.4294 -3.2827 26 6 8.3198 0.6242 -4.3384 27 8 7.2084 -0.1786 -4.7790 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2130 2.3203 -0.0106 32 1 1.3342 4.5113 0.0009 33 1 3.7925 4.6378 0.0001 34 1 5.1345 2.5750 -0.0008 35 1 5.3497 -3.0783 1.8350 36 1 3.8727 -1.7621 -1.9894 37 1 5.0904 -1.9387 -4.1208 38 1 6.2961 1.5616 -0.8640 39 1 9.1213 -0.0077 -3.9557 40 1 8.6823 1.2546 -5.1504 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000169019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:49 Heat of formation + Delta-G solvation = -45.319804 kcal Electronic energy + Delta-G solvation = -25874.601152 eV Core-core repulsion = 22199.931991 eV Total energy + Delta-G solvation = -3674.669161 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55274 -39.68049 -37.62910 -36.61173 -35.74237 -33.78079 -31.59390 -29.81290 -29.45793 -29.22935 -27.07612 -26.43999 -25.28498 -23.64751 -22.30327 -21.79611 -21.31655 -20.05125 -17.55714 -17.26924 -16.97192 -16.76211 -16.33640 -15.61135 -15.50137 -15.18312 -14.97069 -14.41660 -14.10757 -13.77015 -13.53075 -13.18396 -13.05944 -12.83670 -12.74522 -12.47859 -12.21872 -12.11295 -11.85448 -11.49163 -11.27613 -10.97514 -10.94243 -10.78561 -10.60620 -10.58087 -10.28466 -10.09938 -9.52305 -9.21403 -8.54727 -8.15499 -8.00769 -7.43719 -7.25437 -6.11733 -4.15335 1.93020 1.97581 2.05760 2.12834 3.25522 3.31110 3.34880 3.38317 3.86722 3.92984 4.32178 4.45613 4.49084 4.99894 5.16555 5.16621 5.23360 5.27555 5.39708 5.46062 5.48150 5.66337 5.72227 5.76810 5.82770 5.93204 6.08505 6.11219 6.20115 6.28643 6.38691 6.65521 6.75681 6.84337 6.88769 6.98540 7.10170 7.20550 7.29658 7.38170 7.47118 7.75726 7.80802 7.91910 8.07179 8.23497 8.90743 9.47854 10.96114 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006365 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.527409 B = 4398.038938 C = 5717.331787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.119 3.881 4 C -0.214 4.214 5 C -0.108 4.108 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.059 4.059 9 C 0.103 3.897 10 H 0.090 0.910 11 C -0.508 4.508 12 H 0.062 0.938 13 C 0.071 3.929 14 N -0.878 5.878 15 Si 0.889 3.111 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.005 4.005 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.007 4.007 23 C 0.019 3.981 24 C -0.088 4.088 25 O -0.317 6.317 26 C 0.215 3.785 27 O -0.320 6.320 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.263 0.737 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 5.553 -6.687 9.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.215 6.215 3 C 0.074 3.926 4 C -0.233 4.233 5 C -0.126 4.126 6 C -0.180 4.180 7 C -0.098 4.098 8 C -0.060 4.060 9 C 0.085 3.915 10 H 0.108 0.892 11 C -0.546 4.546 12 H 0.080 0.920 13 C -0.133 4.133 14 N -0.514 5.514 15 Si 0.717 3.283 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.006 4.006 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.051 4.051 23 C -0.025 4.025 24 C -0.106 4.106 25 O -0.233 6.233 26 C 0.102 3.898 27 O -0.237 6.237 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.332 5.279 -6.809 9.237 hybrid contribution 0.821 0.070 0.629 1.036 sum -2.512 5.349 -6.180 8.551 Atomic orbital electron populations 1.22939 0.79980 1.03239 1.00438 1.86202 1.19838 1.26791 1.88697 1.18914 0.92158 0.83788 0.97744 1.21060 0.99128 0.92664 1.10432 1.20660 0.94583 0.96314 1.01047 1.20963 0.93858 0.98076 1.05061 1.21004 1.00107 0.91069 0.97660 1.19816 0.90092 0.97227 0.98828 1.17013 0.93451 0.92134 0.88906 0.89171 1.21012 1.25319 0.93121 1.15113 0.91963 1.24967 0.96178 0.95656 0.96467 1.69928 1.40540 0.98336 1.42573 0.86570 0.82016 0.78395 0.81339 1.19488 1.20931 1.20900 1.20483 0.93390 0.91379 0.95376 1.20910 1.00327 0.99497 0.92127 1.19951 0.95847 0.98058 0.98261 1.19602 0.98606 1.00089 0.86769 1.19832 0.93323 0.93045 0.96275 1.20057 0.96505 1.01910 0.92142 1.87282 1.45558 1.41279 1.49211 1.25406 0.88876 0.87313 0.88191 1.87249 1.33285 1.70518 1.32617 0.93448 0.93329 0.88793 0.86518 0.87040 0.86954 0.85491 0.92724 0.85025 0.86060 0.85126 0.90846 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -5.79 9.28 -19.39 -0.18 -5.97 16 3 C 0.12 2.33 6.66 -39.21 -0.26 2.07 16 4 C -0.21 -3.54 9.04 -39.43 -0.36 -3.90 16 5 C -0.11 -1.69 10.04 -39.61 -0.40 -2.09 16 6 C -0.16 -2.69 10.04 -39.56 -0.40 -3.08 16 7 C -0.08 -1.56 8.19 -39.61 -0.32 -1.88 16 8 C -0.06 -1.25 4.78 -104.48 -0.50 -1.75 16 9 C 0.10 2.44 2.23 -94.07 -0.21 2.23 16 10 H 0.09 2.36 5.99 -51.93 -0.31 2.05 16 11 C -0.51 -13.05 7.25 -34.44 -0.25 -13.30 16 12 H 0.06 1.58 6.99 -52.49 -0.37 1.21 16 13 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 14 N -0.88 -24.12 12.83 55.43 0.71 -23.41 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.01 -0.12 4.77 -104.62 -0.50 -0.62 16 20 C -0.11 -2.28 9.66 -39.57 -0.38 -2.67 16 21 C -0.10 -1.95 10.06 -39.47 -0.40 -2.35 16 22 C -0.01 -0.15 7.15 -39.09 -0.28 -0.43 16 23 C 0.02 0.38 7.15 -39.09 -0.28 0.10 16 24 C -0.09 -1.87 8.34 -39.47 -0.33 -2.20 16 25 O -0.32 -5.79 11.40 -45.69 -0.52 -6.31 16 26 C 0.21 3.11 8.89 101.05 0.90 4.00 16 27 O -0.32 -5.64 11.40 -45.70 -0.52 -6.16 16 28 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 29 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.12 1.60 6.30 -52.49 -0.33 1.27 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 2.42 5.37 -52.49 -0.28 2.13 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.13 2.63 7.96 -52.49 -0.42 2.21 16 37 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.13 2.71 5.70 -52.49 -0.30 2.41 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -30.09 335.82 -8.01 -38.10 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.47 Total: 5.65 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -3.07 Total: -22.67 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.71 Total: -23.41 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.22 Total: -18.45 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.09 -8.01 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.218 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds