Wall clock time and date at job start Tue Mar 31 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48509 * 109.46854 * 269.99987 * 3 2 1 5 5 H 1.48499 * 109.47243 * 29.99687 * 3 2 1 6 6 H 1.48500 * 109.47096 * 149.99851 * 3 2 1 7 7 C 1.40116 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.46217 * 119.99867 * 0.02562 * 7 2 1 10 10 O 1.21601 * 120.00469 * 359.97438 * 9 7 2 11 11 O 1.34995 * 119.99726 * 180.02562 * 9 7 2 12 12 C 1.42900 * 116.99927 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.38268 * 119.94286 * 90.00455 * 13 12 11 15 15 C 1.38139 * 120.05510 * 180.02562 * 14 13 12 16 16 C 1.38733 * 119.94507 * 359.97438 * 15 14 13 17 17 O 1.35905 * 120.05258 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99604 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.46937 * 180.02562 * 18 17 16 20 20 C 1.38231 * 120.00133 * 269.72850 * 19 18 17 21 21 C 1.38244 * 119.99987 * 179.76846 * 20 19 18 22 22 C 1.38227 * 119.99797 * 0.48258 * 21 20 19 23 23 C 1.38231 * 120.00402 * 359.79362 * 22 21 20 24 24 C 1.38236 * 119.99981 * 359.95057 * 23 22 21 25 25 C 1.38723 * 119.88799 * 0.25807 * 16 15 14 26 26 C 1.38145 * 119.94323 * 359.49123 * 25 16 15 27 27 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47395 * 60.00035 * 12 11 9 29 29 H 1.08997 * 109.47031 * 299.99743 * 12 11 9 30 30 H 1.08008 * 119.96969 * 0.04028 * 14 13 12 31 31 H 1.08001 * 120.02451 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.47144 * 300.00205 * 18 17 16 33 33 H 1.08998 * 109.47043 * 59.99803 * 18 17 16 34 34 H 1.08001 * 119.99928 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.99637 * 180.24883 * 21 20 19 36 36 H 1.08005 * 119.99984 * 179.76664 * 22 21 20 37 37 H 1.08004 * 120.00572 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.00466 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.02769 * 179.72249 * 25 16 15 40 40 H 1.08006 * 119.97076 * 180.25587 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0463 -1.4002 5 1 1.4380 2.6527 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2759 -2.4797 0.0005 10 8 0.0599 -2.4797 0.0005 11 8 1.9508 -3.6488 0.0016 12 6 1.1725 -4.8472 0.0021 13 6 2.0906 -6.0424 0.0026 14 6 2.5109 -6.5893 1.2010 15 6 3.3528 -7.6844 1.2042 16 6 3.7762 -8.2359 0.0036 17 8 4.6049 -9.3131 0.0042 18 6 5.0006 -9.8278 -1.2688 19 6 5.9111 -11.0121 -1.0708 20 6 7.2782 -10.8264 -0.9855 21 6 8.1130 -11.9124 -0.7991 22 6 7.5814 -13.1851 -0.7079 23 6 6.2148 -13.3715 -0.7988 24 6 5.3795 -12.2851 -0.9800 25 6 3.3569 -7.6825 -1.1973 26 6 2.5108 -6.5904 -1.1952 27 1 -0.4850 0.8400 -0.0004 28 1 0.5440 -4.8727 -0.8881 29 1 0.5434 -4.8715 0.8918 30 1 2.1805 -6.1599 2.1353 31 1 3.6812 -8.1109 2.1405 32 1 4.1167 -10.1385 -1.8258 33 1 5.5274 -9.0532 -1.8261 34 1 7.6939 -9.8324 -1.0613 35 1 9.1808 -11.7667 -0.7285 36 1 8.2339 -14.0340 -0.5660 37 1 5.7994 -14.3660 -0.7280 38 1 4.3118 -12.4307 -1.0515 39 1 3.6887 -8.1072 -2.1332 40 1 2.1808 -6.1617 -2.1299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000403989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:35 Heat of formation + Delta-G solvation = -82.497087 kcal Electronic energy + Delta-G solvation = -23287.018178 eV Core-core repulsion = 19610.736889 eV Total energy + Delta-G solvation = -3676.281289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33997 -39.38578 -38.32087 -37.23593 -34.55119 -32.67249 -32.54757 -31.27906 -30.90213 -30.64970 -27.17392 -26.66669 -24.99415 -22.96517 -22.86947 -21.62948 -21.08386 -20.31228 -18.24135 -17.33211 -17.24577 -16.23155 -16.15173 -15.81721 -15.44759 -15.29772 -14.81032 -14.63490 -14.54669 -14.17009 -13.77437 -13.63803 -13.54297 -13.24370 -13.07312 -12.57404 -12.54971 -12.03595 -11.56158 -11.54328 -11.41029 -11.35200 -11.10846 -11.04297 -10.84934 -10.71019 -10.41848 -10.16336 -9.29127 -9.23866 -9.19290 -8.89145 -8.85415 -8.24003 -7.90443 -6.44448 -4.89320 0.84544 1.03276 1.47526 1.51448 3.01347 3.06911 3.13259 3.18658 3.63028 3.78936 4.00474 4.29638 4.37297 4.42346 4.62869 4.73805 4.83352 4.85699 4.86932 4.95451 5.04221 5.14544 5.26323 5.43742 5.46314 5.53574 5.57021 5.57888 5.65995 5.76676 5.97950 6.05775 6.12730 6.19606 6.22981 6.26648 6.37504 6.48913 6.59414 6.85847 6.90954 7.27496 7.40773 7.77322 8.16997 8.77675 8.79721 10.30455 10.52145 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.031222 B = 0.001990 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.577265 B =14067.936635 C =14581.209702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.080 3.920 3 Si 0.925 3.075 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.480 3.520 10 O -0.563 6.563 11 O -0.381 6.381 12 C 0.115 3.885 13 C -0.109 4.109 14 C -0.060 4.060 15 C -0.153 4.153 16 C 0.122 3.878 17 O -0.311 6.311 18 C 0.101 3.899 19 C -0.093 4.093 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.212 4.212 26 C -0.060 4.060 27 H 0.274 0.726 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.857 -23.268 -2.536 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.140 4.140 3 Si 0.748 3.252 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.540 4.540 8 H 0.100 0.900 9 C 0.339 3.661 10 O -0.458 6.458 11 O -0.302 6.302 12 C 0.040 3.960 13 C -0.109 4.109 14 C -0.078 4.078 15 C -0.172 4.172 16 C 0.078 3.922 17 O -0.225 6.225 18 C 0.026 3.974 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.230 4.230 26 C -0.078 4.078 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.385 -23.326 -2.378 26.517 hybrid contribution 0.191 0.724 -0.262 0.794 sum 12.576 -22.602 -2.639 25.999 Atomic orbital electron populations 1.70015 1.07247 1.28150 1.33531 1.25853 0.94893 1.00769 0.92533 0.86082 0.80059 0.79910 0.79148 1.19376 1.20149 1.18462 1.20435 0.94264 0.86385 1.52882 0.90042 1.21229 0.86649 0.81990 0.76188 1.90659 1.14914 1.86368 1.53875 1.86316 1.41885 1.14138 1.87857 1.20825 0.91504 0.82230 1.01468 1.19796 1.00764 0.97226 0.93139 1.20936 0.94861 0.93850 0.98191 1.20359 1.02078 0.98664 0.96085 1.18962 0.91401 0.87518 0.94341 1.86118 1.62100 1.43519 1.30795 1.21553 0.97242 0.93759 0.84884 1.19537 0.93734 0.93649 1.02408 1.21136 0.92791 0.99341 0.98065 1.21178 0.99965 0.92652 1.00390 1.21236 0.95378 0.97292 0.99172 1.21167 0.93705 0.98871 1.00509 1.21112 1.00055 0.91988 0.98241 1.21151 1.04360 1.00805 0.96703 1.20896 0.94827 0.94015 0.98091 0.91507 0.92553 0.92465 0.85089 0.85323 0.91119 0.91020 0.85667 0.85735 0.85916 0.85778 0.85758 0.85671 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.34 11.83 55.55 0.66 -21.68 16 2 C 0.08 2.21 5.50 -17.35 -0.10 2.11 16 3 Si 0.92 19.85 29.56 -169.99 -5.02 14.83 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.51 -14.73 9.67 -35.67 -0.34 -15.07 16 8 H 0.08 2.22 7.85 -52.49 -0.41 1.80 16 9 C 0.48 14.35 7.88 33.93 0.27 14.62 16 10 O -0.56 -18.25 14.80 -19.34 -0.29 -18.53 16 11 O -0.38 -9.88 10.11 -41.31 -0.42 -10.30 16 12 C 0.12 2.45 5.50 36.01 0.20 2.65 16 13 C -0.11 -1.91 5.51 -104.60 -0.58 -2.49 16 14 C -0.06 -0.94 9.69 -39.61 -0.38 -1.33 16 15 C -0.15 -2.17 9.99 -39.44 -0.39 -2.56 16 16 C 0.12 1.69 6.69 -39.22 -0.26 1.43 16 17 O -0.31 -3.95 10.12 -19.44 -0.20 -4.14 16 18 C 0.10 0.97 4.87 36.00 0.18 1.14 16 19 C -0.09 -0.86 5.51 -104.63 -0.58 -1.44 16 20 C -0.10 -0.82 9.70 -39.58 -0.38 -1.20 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.10 -0.80 9.70 -39.58 -0.38 -1.19 16 25 C -0.21 -2.83 9.04 -39.44 -0.36 -3.19 16 26 C -0.06 -0.93 9.69 -39.61 -0.38 -1.31 16 27 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 28 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.07 0.59 7.62 -51.93 -0.40 0.20 16 33 H 0.07 0.63 7.59 -51.93 -0.39 0.23 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 40 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -34.87 355.06 -9.50 -44.37 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.89 Total: 1.76 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -4.69 Total: -11.64 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.66 Total: -21.68 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.90 Total: -32.98 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.87 -9.50 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000403989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.125 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds