Wall clock time and date at job start Tue Mar 31 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00479 * 2 1 4 4 C 1.38730 * 120.06001 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.94591 * 180.25715 * 4 3 2 6 6 C 1.38268 * 120.05492 * 359.42302 * 5 4 3 7 7 C 1.50700 * 119.94636 * 180.27623 * 6 5 4 8 8 H 1.09004 * 109.47111 * 172.30805 * 7 6 5 9 9 C 1.50699 * 109.46974 * 52.31041 * 7 6 5 10 10 H 1.08003 * 119.99603 * 329.71764 * 9 7 6 11 11 C 1.37879 * 120.00247 * 149.72222 * 9 7 6 12 12 N 1.31508 * 120.00123 * 353.73811 * 11 9 7 13 13 Si 1.86805 * 119.99900 * 173.73479 * 11 9 7 14 14 H 1.48493 * 109.46982 * 60.00241 * 13 11 9 15 15 H 1.48503 * 109.46517 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46980 * 300.00150 * 13 11 9 17 17 C 1.50699 * 109.47513 * 292.30745 * 7 6 5 18 18 C 1.38250 * 119.92742 * 68.41467 * 17 7 6 19 19 C 1.38240 * 120.14674 * 179.97438 * 18 17 7 20 20 C 1.38545 * 120.02355 * 0.02562 * 19 18 17 21 21 C 1.39268 * 119.83152 * 359.97438 * 20 19 18 22 22 C 1.38229 * 119.93003 * 248.14293 * 17 7 6 23 23 O 1.36500 * 108.64010 * 179.97438 * 21 20 19 24 24 C 1.43983 * 105.48837 * 342.72071 * 23 21 20 25 25 O 1.36504 * 131.53059 * 179.97438 * 20 19 18 26 26 C 1.38269 * 120.11149 * 0.60099 * 6 5 4 27 27 C 1.38142 * 120.05387 * 359.67492 * 26 6 5 28 28 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46755 * 300.00100 * 1 2 3 30 30 H 1.09001 * 109.46736 * 60.00036 * 1 2 3 31 31 H 1.08001 * 120.02255 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.97637 * 179.72354 * 5 4 3 33 33 H 0.96995 * 120.00523 * 180.02562 * 12 11 9 34 34 H 1.08005 * 119.93153 * 359.95882 * 18 17 7 35 35 H 1.07992 * 119.98781 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.98392 * 359.97438 * 22 17 7 37 37 H 1.08999 * 110.57264 * 268.56049 * 24 23 21 38 38 H 1.08989 * 110.57752 * 145.67943 * 24 23 21 39 39 H 1.08003 * 119.97563 * 179.69746 * 26 6 5 40 40 H 1.08001 * 120.03137 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5167 0.0059 6 6 3.3021 3.6757 -0.0013 7 6 3.9863 5.0184 -0.0017 8 1 3.2445 5.8041 -0.1453 9 6 4.9940 5.0683 -1.1211 10 1 5.4882 4.1637 -1.4435 11 6 5.2852 6.2688 -1.7336 12 7 4.5974 7.3470 -1.4276 13 14 6.6570 6.3636 -2.9980 14 1 6.3529 5.4490 -4.1277 15 1 6.7679 7.7552 -3.5045 16 1 7.9400 5.9619 -2.3675 17 6 4.6882 5.2250 1.3157 18 6 5.7903 4.4552 1.6383 19 6 6.4379 4.6413 2.8453 20 6 5.9829 5.6005 3.7355 21 6 4.8727 6.3760 3.4106 22 6 4.2321 6.1877 2.1966 23 8 4.6261 7.2377 4.4401 24 6 5.3439 6.7042 5.5685 25 8 6.4323 5.9768 4.9683 26 6 1.9212 3.6047 -0.0014 27 6 1.2916 2.3751 -0.0010 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0208 0.3798 0.0014 32 1 5.1346 2.5749 0.0108 33 1 4.8019 8.1915 -1.8587 34 1 6.1460 3.7066 0.9458 35 1 7.2989 4.0389 3.0944 36 1 3.3738 6.7909 1.9400 37 1 4.7069 6.0338 6.1454 38 1 5.7227 7.5098 6.1973 39 1 1.3343 4.5114 -0.0021 40 1 0.2130 2.3201 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000536103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:54 Heat of formation + Delta-G solvation = -48.381173 kcal Electronic energy + Delta-G solvation = -25266.433233 eV Core-core repulsion = 21591.631321 eV Total energy + Delta-G solvation = -3674.801912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59027 -39.70399 -38.06750 -36.61731 -35.77840 -33.55651 -31.34734 -30.59702 -29.87470 -28.82576 -27.40508 -26.28973 -25.21269 -23.53910 -22.50557 -21.76476 -21.61522 -20.00310 -17.84352 -17.31989 -17.17782 -16.87427 -16.13052 -15.77444 -15.47388 -15.41201 -15.00706 -14.38060 -13.95819 -13.88003 -13.50988 -13.23573 -13.22920 -12.99694 -12.85287 -12.51423 -12.31494 -12.23801 -12.01813 -11.79116 -11.34136 -11.15432 -11.01721 -10.73656 -10.61562 -10.41421 -10.26065 -10.13353 -9.58945 -9.36154 -8.59370 -8.40155 -8.08066 -7.44798 -7.27826 -6.18001 -4.21989 1.89994 1.93368 1.98717 2.11151 3.26419 3.27367 3.31970 3.34243 3.58193 3.89506 4.28176 4.40487 4.44315 4.93779 5.11910 5.12129 5.15102 5.19862 5.23550 5.32010 5.42597 5.52037 5.67499 5.76223 5.83830 5.95356 5.98760 6.09129 6.14958 6.24437 6.35354 6.55400 6.70285 6.79661 6.82255 6.95521 7.05336 7.14720 7.25074 7.34559 7.42170 7.68270 7.76942 7.80928 7.85800 8.17058 8.82463 9.42109 10.90104 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.005616 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.081908 B = 4984.660765 C = 7160.021238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.095 3.905 4 C -0.153 4.153 5 C -0.075 4.075 6 C -0.061 4.061 7 C 0.103 3.897 8 H 0.076 0.924 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.007 4.007 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.007 4.007 21 C 0.023 3.977 22 C -0.099 4.099 23 O -0.316 6.316 24 C 0.214 3.786 25 O -0.319 6.319 26 C -0.089 4.089 27 C -0.207 4.207 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.266 0.734 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -7.504 7.643 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.051 3.949 4 C -0.172 4.172 5 C -0.093 4.093 6 C -0.062 4.062 7 C 0.084 3.916 8 H 0.094 0.906 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.008 4.008 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.050 4.050 21 C -0.021 4.021 22 C -0.117 4.117 23 O -0.233 6.233 24 C 0.102 3.898 25 O -0.236 6.236 26 C -0.107 4.107 27 C -0.226 4.226 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.156 -7.309 7.723 11.417 hybrid contribution 0.511 0.550 -0.450 0.875 sum -3.645 -6.759 7.274 10.577 Atomic orbital electron populations 1.22922 0.79384 1.03020 1.01107 1.86001 1.20597 1.27737 1.89687 1.18897 0.92339 0.83604 1.00040 1.20361 0.91085 0.98448 1.07309 1.20976 1.00222 0.90711 0.97419 1.20318 0.92765 0.96714 0.96370 1.17060 0.95565 0.90154 0.88772 0.90595 1.20918 1.23181 0.94221 1.16382 0.91821 1.24980 0.96032 0.95824 0.96449 1.69882 1.38881 1.00204 1.42727 0.86641 0.82675 0.77226 0.81528 1.20029 1.21222 1.19901 1.20485 0.94308 0.91552 0.94427 1.20860 0.95820 1.00836 0.94450 1.19995 1.01680 0.96990 0.93658 1.19612 0.96664 1.00597 0.88167 1.19808 0.97513 0.92261 0.92483 1.20083 1.00962 1.00454 0.90238 1.87298 1.70104 1.46565 1.19327 1.25403 0.82427 0.93318 0.88653 1.87262 1.37732 1.70887 1.27704 1.20906 0.94568 0.96452 0.98808 1.21080 0.99106 0.92607 1.09822 0.88987 0.93078 0.93013 0.86220 0.85250 0.92469 0.84770 0.85985 0.85496 0.90899 0.86223 0.86249 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.33 -4.89 10.50 -19.42 -0.20 -5.09 16 3 C 0.10 1.58 6.69 -39.21 -0.26 1.32 16 4 C -0.15 -2.60 9.99 -39.44 -0.39 -2.99 16 5 C -0.08 -1.38 8.16 -39.61 -0.32 -1.71 16 6 C -0.06 -1.22 4.77 -104.60 -0.50 -1.72 16 7 C 0.10 2.31 2.27 -94.08 -0.21 2.10 16 8 H 0.08 1.87 6.87 -51.93 -0.36 1.52 16 9 C -0.51 -12.54 7.26 -34.44 -0.25 -12.79 16 10 H 0.06 1.53 6.89 -52.48 -0.36 1.17 16 11 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 12 N -0.88 -23.84 12.83 55.43 0.71 -23.13 16 13 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.01 -0.14 4.77 -104.62 -0.50 -0.64 16 18 C -0.10 -1.98 8.36 -39.58 -0.33 -2.31 16 19 C -0.10 -1.91 10.06 -39.47 -0.40 -2.31 16 20 C -0.01 -0.14 7.15 -39.09 -0.28 -0.42 16 21 C 0.02 0.46 7.15 -39.08 -0.28 0.18 16 22 C -0.10 -2.08 9.68 -39.47 -0.38 -2.46 16 23 O -0.32 -5.77 11.40 -45.69 -0.52 -6.29 16 24 C 0.21 3.01 8.89 101.05 0.90 3.91 16 25 O -0.32 -5.55 11.40 -45.70 -0.52 -6.07 16 26 C -0.09 -1.62 9.66 -39.61 -0.38 -2.01 16 27 C -0.21 -3.37 9.04 -39.43 -0.36 -3.73 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.13 2.26 5.36 -52.48 -0.28 1.98 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.13 2.44 5.71 -52.48 -0.30 2.14 16 35 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.13 2.63 7.96 -52.49 -0.42 2.21 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 1.25 8.14 -51.94 -0.42 0.82 16 39 H 0.12 2.05 7.96 -52.48 -0.42 1.63 16 40 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -29.32 337.38 -8.04 -37.36 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.51 Total: 5.38 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.06 Total: -22.51 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.71 Total: -23.13 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.25 Total: -17.45 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.32 -8.04 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000536103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.024 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds