Wall clock time and date at job start Tue Mar 31 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99848 * 2 1 4 4 O 1.21548 * 119.99751 * 175.56071 * 3 2 1 5 5 C 1.47867 * 120.00243 * 355.56295 * 3 2 1 6 6 C 1.40629 * 120.26124 * 220.59973 * 5 3 2 7 7 N 1.30847 * 121.65997 * 179.68559 * 6 5 3 8 8 C 1.33601 * 121.58185 * 0.60207 * 7 6 5 9 9 C 1.40636 * 121.62976 * 179.67659 * 8 7 6 10 10 N 1.31150 * 120.03867 * 180.02562 * 9 8 7 11 11 C 1.32490 * 122.89061 * 0.02562 * 10 9 8 12 12 C 1.36313 * 121.71382 * 0.02562 * 11 10 9 13 13 C 1.40604 * 118.65092 * 359.97438 * 12 11 10 14 14 C 1.38989 * 120.25763 * 40.87679 * 5 3 2 15 15 C 1.46499 * 119.99812 * 180.02562 * 2 1 3 16 16 C 1.53939 * 113.74263 * 321.25728 * 15 2 1 17 17 N 1.47815 * 86.03555 * 90.88448 * 16 15 2 18 18 C 1.36938 * 134.45672 * 204.64047 * 17 16 15 19 19 H 1.08006 * 119.99557 * 179.86940 * 18 17 16 20 20 C 1.38804 * 119.99987 * 359.87080 * 18 17 16 21 21 N 1.31619 * 120.00429 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46862 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46971 * 119.99879 * 22 20 18 25 25 H 1.48494 * 109.47199 * 239.99966 * 22 20 18 26 26 C 1.47582 * 91.04941 * 24.55161 * 17 16 15 27 27 H 1.09001 * 109.47662 * 274.97119 * 1 2 3 28 28 H 1.09005 * 109.47115 * 34.97204 * 1 2 3 29 29 H 1.09001 * 109.47081 * 154.96600 * 1 2 3 30 30 H 1.08006 * 119.17131 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.98070 * 0.02562 * 9 8 7 32 32 H 1.08003 * 119.14370 * 180.02562 * 11 10 9 33 33 H 1.07997 * 120.67906 * 179.97438 * 12 11 10 34 34 H 1.08002 * 121.11447 * 0.02562 * 14 5 3 35 35 H 1.09003 * 112.94203 * 189.66902 * 15 2 1 36 36 H 1.08998 * 113.76887 * 205.14610 * 16 15 2 37 37 H 1.08993 * 113.77365 * 336.55058 * 16 15 2 38 38 H 0.96993 * 120.00389 * 180.02562 * 21 20 18 39 39 H 1.09006 * 113.76615 * 221.15357 * 26 17 16 40 40 H 1.09001 * 113.77280 * 89.75846 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1688 0.0815 5 6 1.4028 2.4459 -0.0991 6 6 1.9006 3.4899 -0.8990 7 7 1.2687 4.6302 -1.0112 8 6 0.1248 4.8632 -0.3615 9 6 -0.5516 6.0909 -0.4761 10 7 -1.6725 6.2862 0.1763 11 6 -2.2188 5.3676 0.9592 12 6 -1.6430 4.1453 1.1394 13 6 -0.4383 3.8625 0.4717 14 6 0.2166 2.6273 0.6022 15 6 2.1974 -1.2687 -0.0006 16 6 1.5555 -2.3554 0.8808 17 7 0.8156 -2.7586 -0.3337 18 6 -0.3674 -3.4086 -0.5645 19 1 -0.6980 -3.5848 -1.5775 20 6 -1.1416 -3.8409 0.5034 21 7 -0.7385 -3.6266 1.7379 22 14 -2.7557 -4.7270 0.1885 23 1 -2.9798 -4.8421 -1.2749 24 1 -2.7006 -6.0842 0.7887 25 1 -3.8694 -3.9595 0.8015 26 6 1.8621 -2.1776 -1.1970 27 1 -0.3634 0.0890 1.0238 28 1 -0.3633 0.8421 -0.5891 29 1 -0.3633 -0.9311 -0.4349 30 1 2.8253 3.3453 -1.4379 31 1 -0.1479 6.8732 -1.1016 32 1 -3.1444 5.5931 1.4680 33 1 -2.1026 3.4089 1.7819 34 1 -0.1870 1.8451 1.2280 35 1 3.2668 -1.1420 0.1681 36 1 2.2609 -3.1070 1.2352 37 1 0.9197 -1.9599 1.6728 38 1 -1.2793 -3.9290 2.4841 39 1 1.4706 -1.6401 -2.0608 40 1 2.6577 -2.8768 -1.4543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043338708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:56 Heat of formation + Delta-G solvation = 111.197831 kcal Electronic energy + Delta-G solvation = -25351.274859 eV Core-core repulsion = 21747.978315 eV Total energy + Delta-G solvation = -3603.296545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50458 -39.97142 -38.29649 -37.42795 -34.71444 -33.62037 -32.27812 -31.57094 -30.61741 -28.04026 -26.61543 -25.45930 -24.91938 -24.79461 -23.15084 -22.80896 -20.99439 -18.97665 -18.48295 -17.71344 -17.40091 -16.90023 -16.45114 -15.79395 -15.29756 -15.26766 -14.94353 -14.76433 -14.47496 -14.11237 -13.80438 -13.61389 -13.23881 -12.95153 -12.82540 -12.71359 -12.59219 -12.40238 -11.70687 -11.47674 -11.37362 -10.98417 -10.90953 -10.68410 -10.28454 -10.24359 -10.04689 -9.88072 -9.66406 -9.60606 -9.41800 -8.93049 -8.69792 -8.21775 -7.01303 -5.91921 -3.25663 -0.14565 0.30801 1.52335 2.44324 2.96683 3.20562 3.28150 3.35294 3.36842 3.80275 3.87819 4.10441 4.19912 4.30124 4.32695 4.49023 4.51415 4.78246 5.00720 5.05202 5.18197 5.29039 5.34547 5.39575 5.45565 5.55386 5.66782 5.77603 5.95820 5.99157 6.05587 6.08716 6.29207 6.33508 6.39393 6.58349 6.80259 7.04904 7.15752 7.40387 7.41766 7.65949 7.71444 7.82487 8.27019 8.89409 9.55345 10.42746 11.24064 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003918 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.743541 B = 7144.212702 C = 8510.601822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.565 5.565 3 C 0.556 3.444 4 O -0.540 6.540 5 C -0.155 4.155 6 C 0.180 3.820 7 N -0.461 5.461 8 C 0.079 3.921 9 C 0.160 3.840 10 N -0.471 5.471 11 C 0.069 3.931 12 C -0.131 4.131 13 C -0.085 4.085 14 C -0.024 4.024 15 C 0.086 3.914 16 C 0.154 3.846 17 N -0.609 5.609 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.106 3.894 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.047 0.953 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 15.009 -1.848 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.295 5.295 3 C 0.342 3.658 4 O -0.418 6.418 5 C -0.162 4.162 6 C 0.006 3.994 7 N -0.170 5.170 8 C -0.045 4.045 9 C -0.013 4.013 10 N -0.180 5.180 11 C -0.074 4.074 12 C -0.152 4.152 13 C -0.092 4.092 14 C -0.050 4.050 15 C -0.019 4.019 16 C 0.028 3.972 17 N -0.336 5.336 18 C -0.355 4.355 19 H 0.098 0.902 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.020 4.020 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.190 0.810 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.075 16.310 -2.210 16.459 hybrid contribution -0.873 -2.347 0.600 2.575 sum -0.797 13.963 -1.610 14.078 Atomic orbital electron populations 1.22350 0.78546 1.05710 1.01355 1.47348 1.07604 1.04687 1.69840 1.18037 0.86969 0.83157 0.77615 1.90772 1.13198 1.87086 1.50777 1.21161 0.96669 0.97077 1.01287 1.23093 0.97674 0.86188 0.92440 1.67964 1.06900 1.21542 1.20578 1.20060 0.93399 0.95703 0.95302 1.23103 0.89343 0.93844 0.95019 1.67441 1.10415 1.33702 1.06410 1.22276 0.99795 0.89466 0.95830 1.22026 0.94552 0.98977 0.99629 1.18924 0.96763 0.94886 0.98599 1.22389 0.91785 0.95718 0.95147 1.23022 0.95748 0.83022 1.00086 1.22674 0.92244 0.90320 0.91968 1.46271 1.17898 1.67996 1.01484 1.19055 0.93352 1.30291 0.92816 0.90171 1.24756 0.99020 1.01043 0.95147 1.69815 1.38463 1.50853 0.97253 0.86116 0.83234 0.79342 0.77479 1.20451 1.21698 1.21651 1.23017 0.91699 0.93039 0.94290 0.92685 0.92927 0.85752 0.81027 0.81013 0.82320 0.83657 0.82266 0.88383 0.94187 0.90246 0.93569 0.93471 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 7.97 59.85 0.48 1.49 16 2 N -0.57 -9.54 3.09 -176.86 -0.55 -10.09 16 3 C 0.56 9.02 7.34 -12.32 -0.09 8.93 16 4 O -0.54 -10.07 16.42 5.32 0.09 -9.99 16 5 C -0.16 -2.12 5.19 -104.78 -0.54 -2.66 16 6 C 0.18 2.30 10.77 -17.07 -0.18 2.11 16 7 N -0.46 -5.91 10.33 -10.65 -0.11 -6.02 16 8 C 0.08 0.97 6.62 -84.80 -0.56 0.41 16 9 C 0.16 1.74 11.25 -16.94 -0.19 1.55 16 10 N -0.47 -5.22 10.28 -13.11 -0.13 -5.35 16 11 C 0.07 0.65 11.08 -17.96 -0.20 0.46 16 12 C -0.13 -1.27 9.88 -39.38 -0.39 -1.66 16 13 C -0.08 -1.00 5.75 -106.80 -0.61 -1.61 16 14 C -0.02 -0.29 7.52 -38.48 -0.29 -0.58 16 15 C 0.09 1.57 4.53 -70.16 -0.32 1.25 16 16 C 0.15 3.32 6.77 -2.84 -0.02 3.30 16 17 N -0.61 -13.96 2.27 -177.90 -0.40 -14.36 16 18 C -0.23 -5.76 9.69 -15.06 -0.15 -5.91 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 21 N -0.92 -24.82 11.39 55.49 0.63 -24.18 16 22 Si 0.91 20.58 29.55 -169.99 -5.02 15.56 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.11 2.03 8.38 -2.97 -0.02 2.01 16 27 H 0.05 0.86 6.88 -51.93 -0.36 0.51 16 28 H 0.05 0.73 5.96 -51.93 -0.31 0.42 16 29 H 0.12 2.46 5.12 -51.93 -0.27 2.19 16 30 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.16 1.80 5.55 -52.49 -0.29 1.51 16 35 H 0.10 1.76 7.20 -51.93 -0.37 1.38 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.87 6.90 -51.93 -0.36 1.52 16 38 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -30.00 333.30 -8.13 -38.13 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.46 Total: 2.37 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -3.19 Total: 8.92 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.56 Total: -60.01 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.00 -8.13 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043338708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.325 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds