Wall clock time and date at job start Tue Mar 31 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99848 * 2 1 4 4 O 1.21548 * 119.99751 * 175.56071 * 3 2 1 5 5 C 1.47867 * 120.00243 * 355.56295 * 3 2 1 6 6 C 1.40629 * 120.26124 * 220.59973 * 5 3 2 7 7 N 1.30847 * 121.65997 * 179.68559 * 6 5 3 8 8 C 1.33601 * 121.58185 * 0.60207 * 7 6 5 9 9 C 1.40636 * 121.62976 * 179.67659 * 8 7 6 10 10 N 1.31150 * 120.03867 * 180.02562 * 9 8 7 11 11 C 1.32490 * 122.89061 * 0.02562 * 10 9 8 12 12 C 1.36313 * 121.71382 * 0.02562 * 11 10 9 13 13 C 1.40604 * 118.65092 * 359.97438 * 12 11 10 14 14 C 1.38989 * 120.25763 * 40.87679 * 5 3 2 15 15 C 1.46499 * 119.99812 * 180.02562 * 2 1 3 16 16 C 1.53939 * 113.74263 * 321.25728 * 15 2 1 17 17 N 1.47815 * 86.03555 * 90.88448 * 16 15 2 18 18 C 1.36938 * 134.45672 * 204.64047 * 17 16 15 19 19 H 1.08006 * 119.99557 * 179.86940 * 18 17 16 20 20 C 1.38804 * 119.99987 * 359.87080 * 18 17 16 21 21 N 1.31619 * 120.00429 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46862 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46971 * 119.99879 * 22 20 18 25 25 H 1.48494 * 109.47199 * 239.99966 * 22 20 18 26 26 C 1.47582 * 91.04941 * 24.55161 * 17 16 15 27 27 H 1.09001 * 109.47662 * 274.97119 * 1 2 3 28 28 H 1.09005 * 109.47115 * 34.97204 * 1 2 3 29 29 H 1.09001 * 109.47081 * 154.96600 * 1 2 3 30 30 H 1.08006 * 119.17131 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.98070 * 0.02562 * 9 8 7 32 32 H 1.08003 * 119.14370 * 180.02562 * 11 10 9 33 33 H 1.07997 * 120.67906 * 179.97438 * 12 11 10 34 34 H 1.08002 * 121.11447 * 0.02562 * 14 5 3 35 35 H 1.09003 * 112.94203 * 189.66902 * 15 2 1 36 36 H 1.08998 * 113.76887 * 205.14610 * 16 15 2 37 37 H 1.08993 * 113.77365 * 336.55058 * 16 15 2 38 38 H 0.96993 * 120.00389 * 180.02562 * 21 20 18 39 39 H 1.09006 * 113.76615 * 221.15357 * 26 17 16 40 40 H 1.09001 * 113.77280 * 89.75846 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1688 0.0815 5 6 1.4028 2.4459 -0.0991 6 6 1.9006 3.4899 -0.8990 7 7 1.2687 4.6302 -1.0112 8 6 0.1248 4.8632 -0.3615 9 6 -0.5516 6.0909 -0.4761 10 7 -1.6725 6.2862 0.1763 11 6 -2.2188 5.3676 0.9592 12 6 -1.6430 4.1453 1.1394 13 6 -0.4383 3.8625 0.4717 14 6 0.2166 2.6273 0.6022 15 6 2.1974 -1.2687 -0.0006 16 6 1.5555 -2.3554 0.8808 17 7 0.8156 -2.7586 -0.3337 18 6 -0.3674 -3.4086 -0.5645 19 1 -0.6980 -3.5848 -1.5775 20 6 -1.1416 -3.8409 0.5034 21 7 -0.7385 -3.6266 1.7379 22 14 -2.7557 -4.7270 0.1885 23 1 -2.9798 -4.8421 -1.2749 24 1 -2.7006 -6.0842 0.7887 25 1 -3.8694 -3.9595 0.8015 26 6 1.8621 -2.1776 -1.1970 27 1 -0.3634 0.0890 1.0238 28 1 -0.3633 0.8421 -0.5891 29 1 -0.3633 -0.9311 -0.4349 30 1 2.8253 3.3453 -1.4379 31 1 -0.1479 6.8732 -1.1016 32 1 -3.1444 5.5931 1.4680 33 1 -2.1026 3.4089 1.7819 34 1 -0.1870 1.8451 1.2280 35 1 3.2668 -1.1420 0.1681 36 1 2.2609 -3.1070 1.2352 37 1 0.9197 -1.9599 1.6728 38 1 -1.2793 -3.9290 2.4841 39 1 1.4706 -1.6401 -2.0608 40 1 2.6577 -2.8768 -1.4543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043338708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:56 Heat of formation + Delta-G solvation = 93.274958 kcal Electronic energy + Delta-G solvation = -25352.052053 eV Core-core repulsion = 21747.978315 eV Total energy + Delta-G solvation = -3604.073739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45289 -41.26815 -39.54857 -38.63715 -36.00674 -34.76529 -33.98361 -32.63053 -31.48111 -29.76784 -27.95537 -26.61482 -26.57023 -25.75686 -24.68482 -23.70650 -22.34689 -20.23118 -19.68630 -18.87408 -18.54166 -18.34949 -17.68646 -17.08908 -16.76610 -16.46233 -16.15562 -15.79088 -15.67017 -15.43817 -15.15715 -14.64737 -14.55112 -14.36653 -14.05296 -13.92307 -13.71969 -13.44442 -13.22128 -13.05037 -13.00071 -12.76835 -12.38804 -12.01476 -11.86537 -11.63006 -11.47750 -11.38137 -11.02705 -10.82961 -10.52913 -10.41759 -9.64997 -9.53069 -8.86535 -7.87409 -5.20910 -1.04789 -0.60061 0.63856 1.36627 1.47743 1.51106 1.58678 1.77401 2.03919 2.48293 2.91959 2.98056 3.16545 3.28407 3.30960 3.42259 3.47809 3.55673 3.60646 3.81186 3.90475 4.22486 4.25916 4.32047 4.41385 4.45192 4.53463 4.62438 4.67780 4.79750 4.83591 4.87282 4.94150 5.03863 5.19948 5.24754 5.31419 5.47316 5.50299 5.65942 5.91906 6.35315 6.52248 6.84694 6.94206 6.94872 7.62817 8.56026 9.28300 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003918 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.743541 B = 7144.212702 C = 8510.601822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.570 5.570 3 C 0.563 3.437 4 O -0.566 6.566 5 C -0.169 4.169 6 C 0.176 3.824 7 N -0.467 5.467 8 C 0.064 3.936 9 C 0.155 3.845 10 N -0.481 5.481 11 C 0.068 3.932 12 C -0.129 4.129 13 C -0.096 4.096 14 C -0.014 4.014 15 C 0.105 3.895 16 C 0.155 3.845 17 N -0.627 5.627 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.051 4.051 21 N -0.945 5.945 22 Si 0.966 3.034 23 H -0.270 1.270 24 H -0.300 1.300 25 H -0.290 1.290 26 C 0.111 3.889 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.106 0.894 36 H 0.031 0.969 37 H 0.056 0.944 38 H 0.248 0.752 39 H 0.055 0.945 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 16.305 -2.327 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.299 5.299 3 C 0.351 3.649 4 O -0.446 6.446 5 C -0.176 4.176 6 C 0.002 3.998 7 N -0.176 5.176 8 C -0.059 4.059 9 C -0.017 4.017 10 N -0.190 5.190 11 C -0.074 4.074 12 C -0.149 4.149 13 C -0.103 4.103 14 C -0.040 4.040 15 C 0.000 4.000 16 C 0.028 3.972 17 N -0.354 5.354 18 C -0.356 4.356 19 H 0.099 0.901 20 C -0.245 4.245 21 N -0.594 5.594 22 Si 0.796 3.204 23 H -0.194 1.194 24 H -0.227 1.227 25 H -0.217 1.217 26 C -0.015 4.015 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.199 0.801 31 H 0.207 0.793 32 H 0.207 0.793 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.124 0.876 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.987 17.632 -2.722 17.868 hybrid contribution -0.570 -2.655 0.752 2.818 sum -1.557 14.977 -1.970 15.186 Atomic orbital electron populations 1.22208 0.78044 1.04892 1.01640 1.47360 1.07855 1.04476 1.70177 1.18301 0.86661 0.83543 0.76386 1.90753 1.14445 1.87508 1.51877 1.20920 0.97467 0.96042 1.03146 1.23211 0.98056 0.86005 0.92518 1.67978 1.07294 1.21391 1.20899 1.20345 0.93496 0.96508 0.95575 1.23393 0.89284 0.93827 0.95229 1.67515 1.10447 1.34353 1.06689 1.22814 1.00501 0.89014 0.95073 1.22317 0.93622 0.99673 0.99302 1.19101 0.97634 0.94520 0.99003 1.22470 0.91055 0.96141 0.94360 1.22701 0.95964 0.83006 0.98300 1.22556 0.91760 0.91270 0.91565 1.46447 1.18243 1.67786 1.02928 1.19305 0.94260 1.29228 0.92804 0.90093 1.25382 1.01756 1.02330 0.95052 1.69970 1.39431 1.52227 0.97734 0.85195 0.80064 0.77550 0.77592 1.19424 1.22748 1.21669 1.23123 0.90891 0.93054 0.94413 0.92455 0.90513 0.88989 0.80144 0.79307 0.79341 0.81177 0.81502 0.87592 0.95171 0.92592 0.94280 0.92630 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.35 7.97 127.77 1.02 3.37 16 2 N -0.57 -18.82 3.09 -831.75 -2.57 -21.39 16 3 C 0.56 17.80 7.34 86.79 0.64 18.44 16 4 O -0.57 -20.77 16.42 -3.87 -0.06 -20.83 16 5 C -0.17 -4.42 5.19 -19.96 -0.10 -4.53 16 6 C 0.18 4.33 10.77 85.42 0.92 5.25 16 7 N -0.47 -11.41 10.33 -187.60 -1.94 -13.35 16 8 C 0.06 1.47 6.62 40.36 0.27 1.74 16 9 C 0.16 3.09 11.25 85.38 0.96 4.05 16 10 N -0.48 -9.51 10.28 -195.40 -2.01 -11.52 16 11 C 0.07 1.09 11.08 84.14 0.93 2.03 16 12 C -0.13 -2.13 9.88 22.40 0.22 -1.91 16 13 C -0.10 -2.06 5.75 -21.27 -0.12 -2.18 16 14 C -0.01 -0.32 7.52 22.98 0.17 -0.15 16 15 C 0.11 3.81 4.53 46.75 0.21 4.02 16 16 C 0.15 6.75 6.77 86.44 0.59 7.34 16 17 N -0.63 -28.70 2.27 -716.76 -1.63 -30.32 16 18 C -0.23 -11.50 9.69 84.03 0.81 -10.69 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.05 -2.65 5.50 84.86 0.47 -2.18 16 21 N -0.95 -51.89 11.39 21.65 0.25 -51.64 16 22 Si 0.97 42.35 29.55 68.60 2.03 44.38 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 26 C 0.11 4.14 8.38 86.48 0.73 4.86 16 27 H 0.06 1.76 6.88 -2.39 -0.02 1.75 16 28 H 0.08 2.02 5.96 -2.38 -0.01 2.00 16 29 H 0.09 3.61 5.12 -2.39 -0.01 3.59 16 30 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.17 3.47 5.55 -2.91 -0.02 3.46 16 35 H 0.11 3.72 7.20 -2.39 -0.02 3.70 16 36 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 2.70 6.90 -2.39 -0.02 2.69 16 38 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -63.71 333.30 2.85 -60.86 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.08 Total: 14.36 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 7.71 Total: 29.46 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -7.90 Total: -128.23 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -63.71 2.85 -60.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043338708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.135 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds