Wall clock time and date at job start Tue Mar 31 2020 04:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.46883 * 120.46394 * 359.45195 * 4 2 1 6 6 C 1.52858 * 109.01793 * 235.48731 * 5 4 2 7 7 C 1.52666 * 109.17360 * 307.81893 * 6 5 4 8 8 C 1.53485 * 113.62500 * 188.99382 * 7 6 5 9 9 N 1.47667 * 85.98729 * 137.70512 * 8 7 6 10 10 C 1.34783 * 134.45265 * 155.71526 * 9 8 7 11 11 O 1.21280 * 119.99702 * 179.97438 * 10 9 8 12 12 C 1.50696 * 120.00321 * 359.95661 * 10 9 8 13 13 S 1.80998 * 109.47223 * 179.97438 * 12 10 9 14 14 C 1.76197 * 99.99979 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00194 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00033 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00085 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47401 * 89.99926 * 18 16 14 20 20 H 1.48499 * 109.46891 * 210.00078 * 18 16 14 21 21 H 1.48500 * 109.47185 * 329.99850 * 18 16 14 22 22 C 1.47664 * 91.08878 * 335.68577 * 9 8 7 23 23 C 1.52673 * 113.18861 * 57.46256 * 7 6 5 24 24 C 1.46877 * 120.46720 * 179.72696 * 4 2 1 25 25 H 1.08993 * 109.47525 * 239.72573 * 1 2 3 26 26 H 1.09006 * 109.46968 * 359.73136 * 1 2 3 27 27 H 1.09001 * 109.46809 * 119.72132 * 1 2 3 28 28 H 1.09001 * 109.58936 * 355.30981 * 5 4 2 29 29 H 1.08997 * 109.59035 * 115.74455 * 5 4 2 30 30 H 1.09002 * 109.61034 * 187.84375 * 6 5 4 31 31 H 1.08999 * 109.44514 * 67.69524 * 6 5 4 32 32 H 1.08996 * 113.79382 * 251.97235 * 8 7 6 33 33 H 1.08999 * 113.78533 * 23.44085 * 8 7 6 34 34 H 1.09004 * 109.46717 * 299.99739 * 12 10 9 35 35 H 1.09001 * 109.46932 * 59.99842 * 12 10 9 36 36 H 0.96993 * 120.00046 * 179.97438 * 17 16 14 37 37 H 1.09000 * 113.78803 * 270.04935 * 22 9 8 38 38 H 1.08992 * 113.79362 * 138.57862 * 22 9 8 39 39 H 1.08998 * 109.53639 * 182.51873 * 23 7 6 40 40 H 1.08999 * 109.53278 * 62.29672 * 23 7 6 41 41 H 1.09000 * 109.59335 * 244.25923 * 24 4 2 42 42 H 1.09004 * 109.59022 * 4.69137 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 1.4568 -2.4452 0.0005 6 6 1.9334 -3.2822 1.1875 7 6 3.4571 -3.3727 1.1575 8 6 4.0343 -4.3675 2.1738 9 7 4.9469 -4.7851 1.0907 10 6 6.1618 -5.3676 1.0520 11 8 6.6887 -5.6009 -0.0152 12 6 6.8656 -5.7285 2.3347 13 16 8.4630 -6.4892 1.9530 14 6 9.0515 -6.8000 3.5845 15 1 8.4486 -6.5256 4.4374 16 6 10.2900 -7.3976 3.7734 17 7 10.7294 -7.6302 4.9922 18 14 11.3332 -7.8716 2.2981 19 1 12.2151 -6.7351 1.9297 20 1 12.1651 -9.0534 2.6394 21 1 10.4485 -8.2032 1.1524 22 6 3.9949 -4.3097 0.0669 23 6 4.1410 -2.0079 1.1813 24 6 3.6496 -1.1793 -0.0116 25 1 -0.3634 -0.5180 0.8874 26 1 -0.3633 1.0277 0.0048 27 1 -0.3633 -0.5095 -0.8925 28 1 0.3869 -2.2586 0.0934 29 1 1.6570 -2.9831 -0.9261 30 1 1.5076 -4.2835 1.1235 31 1 1.6147 -2.8092 2.1163 32 1 4.5390 -3.8932 3.0155 33 1 3.3308 -5.1420 2.4791 34 1 7.0242 -4.8278 2.9279 35 1 6.2540 -6.4324 2.8991 36 1 11.5947 -8.0481 5.1243 37 1 3.2797 -5.0671 -0.2538 38 1 4.4681 -3.7894 -0.7657 39 1 5.2208 -2.1400 1.1131 40 1 3.8938 -1.4926 2.1095 41 1 4.0076 -1.6261 -0.9391 42 1 4.0238 -0.1590 0.0732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060911221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:10 Heat of formation + Delta-G solvation = -37.261380 kcal Electronic energy + Delta-G solvation = -23587.875581 eV Core-core repulsion = 20081.292562 eV Total energy + Delta-G solvation = -3506.583019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36252 -39.84699 -38.11401 -36.27399 -32.55655 -32.45113 -31.99904 -30.14910 -29.44688 -27.15783 -26.26177 -25.57363 -23.88285 -23.60291 -20.51051 -19.34428 -18.40481 -17.72771 -17.36875 -16.62412 -16.29233 -16.12903 -15.84244 -15.54961 -14.96262 -14.70309 -14.36776 -14.14151 -13.95212 -13.81754 -13.45546 -13.29510 -13.00831 -12.82480 -12.79518 -12.54787 -12.47623 -12.21567 -12.00700 -11.66734 -11.30179 -11.16300 -11.04425 -11.01996 -10.83464 -10.61781 -10.15343 -9.86593 -9.49189 -9.04323 -9.01859 -8.68552 -8.51949 -6.94133 -6.30426 -4.02456 2.26171 2.55198 2.61274 2.91931 3.09822 3.32181 3.49334 3.55477 3.83167 4.11479 4.20780 4.31397 4.40141 4.43224 4.59953 4.68136 4.77499 4.83580 4.90488 4.98179 5.02157 5.08589 5.09357 5.14935 5.20067 5.24865 5.33739 5.36816 5.45128 5.47503 5.50872 5.65191 5.72634 5.78361 5.89210 5.93766 5.99682 6.14433 7.00216 7.71659 7.80023 7.92654 8.39855 8.40872 9.15677 10.78788 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.034692 B = 0.002548 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.897167 B =10985.095973 C =11014.770614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.548 6.548 4 N -0.612 5.612 5 C 0.107 3.893 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.112 3.888 9 N -0.647 5.647 10 C 0.554 3.446 11 O -0.518 6.518 12 C -0.116 4.116 13 S -0.143 6.143 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.117 3.883 23 C -0.108 4.108 24 C 0.111 3.889 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.120 11.136 -8.237 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.347 5.347 5 C -0.016 4.016 6 C -0.159 4.159 7 C -0.095 4.095 8 C -0.012 4.012 9 N -0.386 5.386 10 C 0.343 3.657 11 O -0.392 6.392 12 C -0.266 4.266 13 S 0.084 5.916 14 C -0.668 4.668 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.517 5.517 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.006 4.006 23 C -0.147 4.147 24 C -0.011 4.011 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.639 11.171 -9.713 27.892 hybrid contribution 0.005 -0.283 1.011 1.050 sum -23.634 10.888 -8.702 27.438 Atomic orbital electron populations 1.21947 0.91848 1.05459 1.04102 1.20839 0.90653 0.83051 0.75429 1.90727 1.70770 1.31103 1.49929 1.48144 1.07052 1.05990 1.73479 1.21686 0.96796 0.84096 0.99010 1.21770 0.94016 1.00947 0.99174 1.22123 0.95070 0.95156 0.97173 1.23230 0.90594 0.94990 0.92356 1.49964 1.16184 1.62676 1.09766 1.20003 0.79253 0.75305 0.91117 1.90710 1.64718 1.52104 1.31710 1.23211 1.01493 1.04523 0.97392 1.84794 1.15077 1.77900 1.13847 1.22297 1.07297 1.46939 0.90301 0.89410 1.24715 0.96571 0.93916 0.96115 1.69935 1.20081 1.41319 1.20323 0.86732 0.81867 0.79261 0.83978 1.19178 1.19910 1.15939 1.23143 0.89735 0.94454 0.93230 1.21649 1.00843 0.93084 0.99074 1.21616 0.79061 1.02181 0.98272 0.89328 0.89058 0.89374 0.89258 0.90871 0.89746 0.90587 0.89713 0.89492 0.88695 0.88673 0.91918 0.89946 0.90192 0.89780 0.90693 0.91180 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 8.66 36.00 0.31 -0.45 16 2 C 0.51 4.46 7.80 -10.98 -0.09 4.37 16 3 O -0.55 -7.36 16.48 5.56 0.09 -7.27 16 4 N -0.61 -4.38 2.95 -172.95 -0.51 -4.89 16 5 C 0.11 0.43 6.19 -3.91 -0.02 0.41 16 6 C -0.12 -0.51 5.24 -26.98 -0.14 -0.65 16 7 C -0.09 -0.66 0.77 -154.43 -0.12 -0.78 16 8 C 0.11 0.97 7.75 -3.16 -0.02 0.95 16 9 N -0.65 -8.36 3.44 -180.23 -0.62 -8.98 16 10 C 0.55 10.12 8.07 -10.98 -0.09 10.03 16 11 O -0.52 -11.51 16.59 5.56 0.09 -11.42 16 12 C -0.12 -2.29 5.90 36.00 0.21 -2.07 16 13 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 14 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 15 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 18 Si 0.86 21.87 27.74 -169.99 -4.72 17.16 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 22 C 0.12 1.10 7.62 -3.15 -0.02 1.07 16 23 C -0.11 -0.88 5.21 -26.72 -0.14 -1.02 16 24 C 0.11 0.93 6.30 -3.66 -0.02 0.91 16 25 H 0.09 0.23 7.70 -51.93 -0.40 -0.17 16 26 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.09 0.23 7.92 -51.93 -0.41 -0.19 16 28 H 0.09 0.17 5.89 -51.93 -0.31 -0.14 16 29 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.08 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 35 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.08 0.82 7.41 -51.93 -0.38 0.43 16 39 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 42 H 0.10 0.97 6.98 -51.93 -0.36 0.61 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -37.31 354.60 -7.93 -45.24 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -6.46 Total: -4.44 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 0.07 Total: 0.72 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.36 Total: -39.68 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.31 -7.93 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060911221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.977 kcal (2) G-P(sol) polarization free energy of solvation -37.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds