Wall clock time and date at job start Tue Mar 31 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46763 * 2 1 4 4 N 1.46495 * 109.47329 * 240.00674 * 2 1 3 5 5 C 1.36934 * 120.00354 * 84.99415 * 4 2 1 6 6 H 1.07996 * 120.00100 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99955 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99766 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99838 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47055 * 89.99693 * 9 7 5 11 11 H 1.48499 * 109.46652 * 209.99579 * 9 7 5 12 12 H 1.48503 * 109.47077 * 329.99221 * 9 7 5 13 13 C 1.53002 * 109.47431 * 119.99858 * 2 1 3 14 14 H 1.08994 * 109.51096 * 299.90032 * 13 2 1 15 15 C 1.53294 * 109.51162 * 179.74833 * 13 2 1 16 16 N 1.47158 * 108.38174 * 187.77502 * 15 13 2 17 17 C 1.34780 * 120.98075 * 230.51367 * 16 15 13 18 18 O 1.21577 * 119.99995 * 355.92962 * 17 16 15 19 19 C 1.47610 * 119.99825 * 175.92789 * 17 16 15 20 20 N 1.31867 * 126.46093 * 6.25576 * 19 17 16 21 21 N 1.28467 * 110.15993 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.93808 * 180.02562 * 21 20 19 23 23 C 1.35733 * 110.12775 * 0.02562 * 21 20 19 24 24 C 1.35541 * 107.11769 * 359.72460 * 23 21 20 25 25 F 1.35098 * 127.24293 * 180.29242 * 24 23 21 26 26 C 1.47144 * 118.03343 * 50.53673 * 16 15 13 27 27 C 1.53293 * 108.38771 * 309.46320 * 26 16 15 28 28 O 1.42957 * 109.50767 * 60.00641 * 13 2 1 29 29 H 1.09001 * 109.47326 * 60.00087 * 1 2 3 30 30 H 1.08998 * 109.47238 * 299.99237 * 1 2 3 31 31 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99558 * 264.99540 * 4 2 1 33 33 H 0.96998 * 119.99403 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.68451 * 307.50081 * 15 13 2 35 35 H 1.08998 * 109.68107 * 68.05386 * 15 13 2 36 36 H 1.08002 * 126.43893 * 179.97438 * 23 21 20 37 37 H 1.09008 * 109.68023 * 189.73617 * 26 16 15 38 38 H 1.09005 * 109.68443 * 69.19265 * 26 16 15 39 39 H 1.08994 * 109.51447 * 292.37811 * 27 26 16 40 40 H 1.09003 * 109.55445 * 172.25103 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8917 1.0405 -2.4243 7 6 2.6124 -0.6615 -3.5091 8 7 2.7385 -0.0047 -4.6427 9 14 3.0568 -2.4739 -3.4252 10 1 1.8598 -3.2924 -3.7451 11 1 4.1326 -2.7656 -4.4064 12 1 3.5314 -2.8044 -2.0574 13 6 2.0401 -0.7212 1.2492 14 1 1.6786 -0.2069 2.1396 15 6 3.5730 -0.7272 1.2469 16 7 4.0354 -1.5828 2.3513 17 6 4.9545 -1.1415 3.2328 18 8 5.4688 -0.0505 3.0799 19 6 5.3367 -1.9829 4.3839 20 7 4.9509 -3.2234 4.6102 21 7 5.4708 -3.6565 5.7023 22 1 5.3299 -4.5423 6.0715 23 6 6.2459 -2.6944 6.2643 24 6 6.1915 -1.6121 5.4501 25 9 6.8189 -0.4279 5.6212 26 6 3.4650 -2.9345 2.4645 27 6 1.9373 -2.8210 2.4074 28 8 1.5641 -2.0692 1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6316 -1.1526 33 1 3.0618 -0.4620 -5.4346 34 1 3.9372 -1.1228 0.2988 35 1 3.9443 0.2877 1.3887 36 1 6.8046 -2.7772 7.1849 37 1 3.7648 -3.3813 3.4125 38 1 3.8183 -3.5524 1.6389 39 1 1.5761 -2.3146 3.3025 40 1 1.4993 -3.8175 2.3511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485644660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:18 Heat of formation + Delta-G solvation = -5.317022 kcal Electronic energy + Delta-G solvation = -26732.506545 eV Core-core repulsion = 22693.388313 eV Total energy + Delta-G solvation = -4039.118232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.92579 -43.16932 -40.14004 -38.32503 -35.63824 -34.61716 -32.51725 -32.09898 -31.11259 -30.30618 -28.86561 -27.87173 -24.84842 -23.89701 -23.21540 -22.40756 -21.79010 -19.98499 -19.75551 -18.77443 -17.79025 -17.25743 -16.80976 -16.39537 -16.24975 -15.79364 -15.49263 -15.32434 -14.91188 -14.76018 -14.58357 -14.29760 -14.04143 -13.56035 -13.30933 -12.99493 -12.80309 -12.43963 -12.18061 -12.03057 -11.62137 -11.24694 -11.02797 -10.82759 -10.79131 -10.55261 -10.37594 -10.08315 -10.04279 -9.91175 -9.77989 -9.50593 -9.40243 -8.89997 -8.43285 -7.19181 -5.70538 -3.05114 0.99066 1.40184 2.11927 2.77335 3.09903 3.44114 3.48941 3.51187 3.65800 3.96093 4.11714 4.34529 4.48489 4.66306 4.79744 4.85332 5.08940 5.18794 5.25888 5.30449 5.52201 5.60282 5.65757 5.66996 5.80168 5.90151 5.97587 6.17393 6.23473 6.32368 6.36355 6.50103 6.55444 6.76070 7.09211 7.12037 7.33650 7.39985 8.03270 8.06754 8.48944 9.28620 10.00784 10.22125 11.47888 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.003753 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.898383 B = 7459.513774 C = 7573.610680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.241 4.241 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.276 1.276 13 C 0.075 3.925 14 H 0.061 0.939 15 C 0.085 3.915 16 N -0.596 5.596 17 C 0.596 3.404 18 O -0.521 6.521 19 C -0.016 4.016 20 N -0.236 5.236 21 N -0.373 5.373 22 H 0.456 0.544 23 C -0.032 4.032 24 C 0.039 3.961 25 F -0.098 7.098 26 C 0.041 3.959 27 C 0.050 3.950 28 O -0.365 6.365 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.367 0.633 33 H 0.258 0.742 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.200 0.800 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -10.620 26.667 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.386 5.386 5 C -0.371 4.371 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.203 1.203 13 C 0.016 3.984 14 H 0.078 0.922 15 C -0.037 4.037 16 N -0.329 5.329 17 C 0.381 3.619 18 O -0.395 6.395 19 C -0.178 4.178 20 N -0.072 5.072 21 N -0.088 5.088 22 H 0.302 0.698 23 C -0.178 4.178 24 C 0.009 3.991 25 F -0.076 7.076 26 C -0.082 4.082 27 C -0.028 4.028 28 O -0.284 6.284 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.201 0.799 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.216 0.784 37 H 0.154 0.846 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.291 -10.674 25.789 28.104 hybrid contribution 1.020 -1.036 0.721 1.623 sum 4.311 -11.711 26.510 29.300 Atomic orbital electron populations 1.22312 0.97968 1.01579 1.00171 1.20241 0.92960 0.94927 0.84058 0.91263 1.42736 1.79324 1.09804 1.06785 1.19087 1.36783 0.95591 0.85636 0.89133 1.24633 1.01479 0.97349 0.95543 1.69702 1.52796 1.35516 1.00238 0.86565 0.78038 0.87093 0.76966 1.21132 1.21989 1.20255 1.22974 0.92026 0.83461 0.99929 0.92158 1.22520 0.95047 0.96763 0.89345 1.48011 1.40597 1.16069 1.28272 1.16827 0.79750 0.84894 0.80446 1.90860 1.53460 1.20777 1.74367 1.22282 1.03467 0.92646 0.99396 1.73326 1.19189 1.11627 1.03103 1.43250 1.34188 1.14926 1.16454 0.69785 1.22700 1.03024 0.89456 1.02606 1.17145 1.00642 0.84564 0.96766 1.91559 1.79606 1.41652 1.94827 1.23348 0.94864 0.83582 1.06438 1.22900 0.93384 0.97283 0.89274 1.88052 1.75333 1.23782 1.41190 0.92254 0.94511 0.92661 0.79936 0.93150 0.88771 0.87998 0.78357 0.84610 0.90610 0.93264 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.35 37.16 0.35 -2.55 16 2 C 0.19 3.67 2.73 -67.93 -0.19 3.48 16 3 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 4 N -0.74 -17.67 4.09 -53.43 -0.22 -17.89 16 5 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 9 Si 0.88 22.69 27.74 -169.99 -4.71 17.97 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.28 -6.74 6.52 56.52 0.37 -6.38 16 13 C 0.08 1.26 2.53 -26.58 -0.07 1.19 16 14 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 15 C 0.08 1.49 5.85 -3.53 -0.02 1.46 16 16 N -0.60 -9.21 3.02 -173.48 -0.52 -9.73 16 17 C 0.60 9.60 7.71 -12.43 -0.10 9.50 16 18 O -0.52 -10.12 16.17 5.30 0.09 -10.03 16 19 C -0.02 -0.21 6.90 -82.75 -0.57 -0.78 16 20 N -0.24 -2.16 8.58 33.43 0.29 -1.88 16 21 N -0.37 -1.86 6.87 30.64 0.21 -1.65 16 22 H 0.46 0.22 8.96 -190.44 -1.71 -1.48 16 23 C -0.03 -0.18 12.06 -16.79 -0.20 -0.39 16 24 C 0.04 0.42 8.03 -39.26 -0.32 0.11 16 25 F -0.10 -1.28 17.05 2.25 0.04 -1.24 16 26 C 0.04 0.52 6.49 -3.54 -0.02 0.50 16 27 C 0.05 0.61 6.98 37.31 0.26 0.87 16 28 O -0.37 -6.00 9.22 -35.23 -0.32 -6.33 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 32 H 0.37 8.84 5.06 -40.82 -0.21 8.63 16 33 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 34 H 0.09 1.88 7.26 -51.93 -0.38 1.51 16 35 H 0.10 1.85 7.11 -51.93 -0.37 1.48 16 36 H 0.20 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.14 1.42 3.86 -103.27 -0.40 1.02 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -36.74 333.27 -6.92 -43.65 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.43 Total: 4.51 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.13 Total: 6.50 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.53 Total: -60.05 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.24 Total: -16.36 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.74 -6.92 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485644660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.338 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds