Wall clock time and date at job start Tue Mar 31 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46763 * 2 1 4 4 N 1.46495 * 109.47329 * 240.00674 * 2 1 3 5 5 C 1.36934 * 120.00354 * 84.99415 * 4 2 1 6 6 H 1.07996 * 120.00100 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99955 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99766 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99838 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47055 * 89.99693 * 9 7 5 11 11 H 1.48499 * 109.46652 * 209.99579 * 9 7 5 12 12 H 1.48503 * 109.47077 * 329.99221 * 9 7 5 13 13 C 1.53002 * 109.47431 * 119.99858 * 2 1 3 14 14 H 1.08994 * 109.51096 * 299.90032 * 13 2 1 15 15 C 1.53294 * 109.51162 * 179.74833 * 13 2 1 16 16 N 1.47158 * 108.38174 * 187.77502 * 15 13 2 17 17 C 1.34780 * 120.98075 * 230.51367 * 16 15 13 18 18 O 1.21577 * 119.99995 * 355.92962 * 17 16 15 19 19 C 1.47610 * 119.99825 * 175.92789 * 17 16 15 20 20 N 1.31867 * 126.46093 * 6.25576 * 19 17 16 21 21 N 1.28467 * 110.15993 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.93808 * 180.02562 * 21 20 19 23 23 C 1.35733 * 110.12775 * 0.02562 * 21 20 19 24 24 C 1.35541 * 107.11769 * 359.72460 * 23 21 20 25 25 F 1.35098 * 127.24293 * 180.29242 * 24 23 21 26 26 C 1.47144 * 118.03343 * 50.53673 * 16 15 13 27 27 C 1.53293 * 108.38771 * 309.46320 * 26 16 15 28 28 O 1.42957 * 109.50767 * 60.00641 * 13 2 1 29 29 H 1.09001 * 109.47326 * 60.00087 * 1 2 3 30 30 H 1.08998 * 109.47238 * 299.99237 * 1 2 3 31 31 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99558 * 264.99540 * 4 2 1 33 33 H 0.96998 * 119.99403 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.68451 * 307.50081 * 15 13 2 35 35 H 1.08998 * 109.68107 * 68.05386 * 15 13 2 36 36 H 1.08002 * 126.43893 * 179.97438 * 23 21 20 37 37 H 1.09008 * 109.68023 * 189.73617 * 26 16 15 38 38 H 1.09005 * 109.68443 * 69.19265 * 26 16 15 39 39 H 1.08994 * 109.51447 * 292.37811 * 27 26 16 40 40 H 1.09003 * 109.55445 * 172.25103 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8917 1.0405 -2.4243 7 6 2.6124 -0.6615 -3.5091 8 7 2.7385 -0.0047 -4.6427 9 14 3.0568 -2.4739 -3.4252 10 1 1.8598 -3.2924 -3.7451 11 1 4.1326 -2.7656 -4.4064 12 1 3.5314 -2.8044 -2.0574 13 6 2.0401 -0.7212 1.2492 14 1 1.6786 -0.2069 2.1396 15 6 3.5730 -0.7272 1.2469 16 7 4.0354 -1.5828 2.3513 17 6 4.9545 -1.1415 3.2328 18 8 5.4688 -0.0505 3.0799 19 6 5.3367 -1.9829 4.3839 20 7 4.9509 -3.2234 4.6102 21 7 5.4708 -3.6565 5.7023 22 1 5.3299 -4.5423 6.0715 23 6 6.2459 -2.6944 6.2643 24 6 6.1915 -1.6121 5.4501 25 9 6.8189 -0.4279 5.6212 26 6 3.4650 -2.9345 2.4645 27 6 1.9373 -2.8210 2.4074 28 8 1.5641 -2.0692 1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6316 -1.1526 33 1 3.0618 -0.4620 -5.4346 34 1 3.9372 -1.1228 0.2988 35 1 3.9443 0.2877 1.3887 36 1 6.8046 -2.7772 7.1849 37 1 3.7648 -3.3813 3.4125 38 1 3.8183 -3.5524 1.6389 39 1 1.5761 -2.3146 3.3025 40 1 1.4993 -3.8175 2.3511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485644660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:18 Heat of formation + Delta-G solvation = -34.249639 kcal Electronic energy + Delta-G solvation = -26733.761158 eV Core-core repulsion = 22693.388313 eV Total energy + Delta-G solvation = -4040.372845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.75051 -43.84505 -41.35566 -39.61707 -37.26752 -35.91110 -34.25326 -33.16184 -32.02298 -31.62696 -30.48244 -29.06795 -26.12322 -25.20053 -24.84447 -23.26524 -22.81095 -21.36603 -20.82889 -19.89088 -19.53177 -18.36079 -17.70609 -17.59470 -17.06145 -17.00065 -16.64430 -16.37525 -16.21876 -15.98258 -15.87351 -15.50090 -15.33385 -15.07387 -14.68579 -14.39202 -14.25560 -14.02783 -13.60368 -13.39438 -13.01794 -12.83593 -12.56273 -12.51246 -12.15326 -12.04773 -11.79042 -11.70042 -11.66051 -11.24201 -11.01070 -10.91626 -10.74864 -10.10298 -9.69531 -9.26528 -7.99802 -5.31248 0.15209 0.76204 1.37510 1.39967 1.47195 1.48667 1.83961 1.99808 2.49867 2.71920 2.86546 3.32548 3.47610 3.50848 3.61170 3.75870 3.80166 3.91431 3.99616 4.14956 4.23771 4.37376 4.46102 4.50993 4.61314 4.77103 4.80525 4.82676 4.95578 5.03464 5.09935 5.21095 5.31486 5.57687 5.80205 5.87144 6.13942 6.18235 6.26681 6.55508 6.86644 7.11187 7.87487 8.08166 9.22033 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.003753 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.898383 B = 7459.513774 C = 7573.610680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.178 3.822 3 H 0.061 0.939 4 N -0.744 5.744 5 C -0.222 4.222 6 H 0.061 0.939 7 C -0.063 4.063 8 N -0.984 5.984 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.258 1.258 13 C 0.092 3.908 14 H 0.083 0.917 15 C 0.089 3.911 16 N -0.598 5.598 17 C 0.589 3.411 18 O -0.570 6.570 19 C -0.051 4.051 20 N -0.235 5.235 21 N -0.340 5.340 22 H 0.480 0.520 23 C 0.019 3.981 24 C -0.008 4.008 25 F -0.120 7.120 26 C 0.041 3.959 27 C 0.046 3.954 28 O -0.384 6.384 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.368 0.632 33 H 0.256 0.744 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.252 0.748 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -14.080 30.660 33.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 H 0.079 0.921 4 N -0.388 5.388 5 C -0.353 4.353 6 H 0.079 0.921 7 C -0.254 4.254 8 N -0.636 5.636 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.183 1.183 13 C 0.033 3.967 14 H 0.101 0.899 15 C -0.034 4.034 16 N -0.330 5.330 17 C 0.377 3.623 18 O -0.448 6.448 19 C -0.209 4.209 20 N -0.073 5.073 21 N -0.059 5.059 22 H 0.332 0.668 23 C -0.128 4.128 24 C -0.038 4.038 25 F -0.099 7.099 26 C -0.082 4.082 27 C -0.031 4.031 28 O -0.303 6.303 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.268 0.732 37 H 0.178 0.822 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.004 -14.196 29.854 33.193 hybrid contribution 1.102 0.011 -0.343 1.154 sum 4.106 -14.185 29.511 33.000 Atomic orbital electron populations 1.22143 0.96245 1.01683 1.00767 1.20477 0.94062 0.94718 0.83801 0.92061 1.42695 1.79619 1.09751 1.06701 1.19062 1.34552 0.94526 0.87197 0.92146 1.25388 1.02655 1.02064 0.95265 1.69874 1.55062 1.37513 1.01111 0.85470 0.77619 0.81516 0.77547 1.20422 1.22554 1.18320 1.22636 0.90959 0.84264 0.98847 0.89916 1.22228 0.95864 0.96259 0.89042 1.48081 1.40600 1.16840 1.27444 1.17374 0.78955 0.84809 0.81184 1.90815 1.55116 1.23087 1.75761 1.21776 1.06038 0.93824 0.99312 1.73071 1.19530 1.10068 1.04621 1.43417 1.32051 1.15722 1.14669 0.66821 1.23342 1.00472 0.86782 1.02214 1.17642 1.02288 0.85556 0.98275 1.91491 1.80169 1.43246 1.95018 1.23587 0.95145 0.81911 1.07530 1.23214 0.93060 0.98385 0.88402 1.88009 1.75433 1.23366 1.43475 0.94480 0.91079 0.92697 0.79853 0.93503 0.91760 0.89659 0.73199 0.82224 0.91300 0.91700 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.35 71.98 0.67 -4.55 16 2 C 0.18 6.94 2.73 44.99 0.12 7.06 16 3 H 0.06 2.48 8.08 -2.38 -0.02 2.46 16 4 N -0.74 -35.76 4.09 -322.94 -1.32 -37.08 16 5 C -0.22 -12.94 10.41 84.04 0.87 -12.07 16 6 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 7 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.98 -64.79 13.97 21.65 0.30 -64.49 16 9 Si 0.95 47.70 27.74 68.60 1.90 49.60 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 12 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 13 C 0.09 3.00 2.53 30.69 0.08 3.08 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.09 3.19 5.85 86.35 0.51 3.69 16 16 N -0.60 -18.31 3.02 -821.02 -2.48 -20.79 16 17 C 0.59 19.29 7.71 86.72 0.67 19.95 16 18 O -0.57 -23.39 16.17 -3.96 -0.06 -23.46 16 19 C -0.05 -1.20 6.90 42.44 0.29 -0.91 16 20 N -0.23 -3.51 8.58 -48.16 -0.41 -3.92 16 21 N -0.34 -1.67 6.87 -56.99 -0.39 -2.06 16 22 H 0.48 -2.43 8.96 -219.99 -1.97 -4.40 16 23 C 0.02 0.12 12.06 83.47 1.01 1.13 16 24 C -0.01 -0.16 8.03 22.47 0.18 0.02 16 25 F -0.12 -3.16 17.05 44.97 0.77 -2.39 16 26 C 0.04 0.93 6.49 86.35 0.56 1.49 16 27 C 0.05 0.98 6.98 72.08 0.50 1.48 16 28 O -0.38 -11.75 9.22 -148.98 -1.37 -13.13 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.93 7.68 -2.38 -0.02 1.91 16 32 H 0.37 17.55 5.06 -92.71 -0.47 17.08 16 33 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 34 H 0.06 2.66 7.26 -2.39 -0.02 2.64 16 35 H 0.08 3.29 7.11 -2.39 -0.02 3.27 16 36 H 0.25 -1.03 8.06 -2.91 -0.02 -1.06 16 37 H 0.16 2.85 3.86 -68.81 -0.27 2.59 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -86.35 333.27 1.21 -85.14 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -1.65 Total: 15.52 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.93 Total: 17.06 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -4.30 Total: -128.34 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.44 Total: -36.58 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.77 Total: -2.39 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.90 Total: 49.60 kcal Total: -86.35 1.21 -85.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485644660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.891 kcal (2) G-P(sol) polarization free energy of solvation -86.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds