Wall clock time and date at job start Tue Mar 31 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00422 * 2 1 4 4 O 1.21280 * 120.00179 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99720 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.47163 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99933 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00353 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99705 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00132 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00133 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00126 * 11 9 7 15 15 C 1.46500 * 119.99827 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.64665 * 183.14183 * 15 2 1 17 17 C 1.55157 * 110.72332 * 306.48340 * 15 2 1 18 18 C 1.54910 * 101.58411 * 153.86309 * 17 15 2 19 19 N 1.47423 * 104.83226 * 322.99100 * 18 17 15 20 20 C 1.34776 * 125.64827 * 204.16415 * 19 18 17 21 21 O 1.21277 * 119.99974 * 179.97438 * 20 19 18 22 22 C 1.50704 * 119.99807 * 359.95680 * 20 19 18 23 23 C 1.52998 * 117.49618 * 248.74541 * 22 20 19 24 24 C 1.53002 * 117.49829 * 180.08676 * 22 20 19 25 25 C 1.47018 * 108.70325 * 24.12917 * 19 18 17 26 26 H 1.09007 * 109.47160 * 90.00427 * 1 2 3 27 27 H 1.09004 * 109.47849 * 210.00032 * 1 2 3 28 28 H 1.08998 * 109.47141 * 330.00687 * 1 2 3 29 29 H 1.08995 * 109.47138 * 59.99991 * 5 3 2 30 30 H 1.08998 * 109.47102 * 300.00238 * 5 3 2 31 31 H 0.97001 * 120.00200 * 359.97438 * 10 9 7 32 32 H 1.09000 * 111.00262 * 271.94099 * 17 15 2 33 33 H 1.08993 * 111.00539 * 35.78884 * 17 15 2 34 34 H 1.09002 * 110.36820 * 204.14813 * 18 17 15 35 35 H 1.09005 * 110.45915 * 81.87412 * 18 17 15 36 36 H 1.08998 * 115.55168 * 34.41632 * 22 20 19 37 37 H 1.08998 * 117.50100 * 0.02562 * 23 22 20 38 38 H 1.08999 * 117.49713 * 145.02400 * 23 22 20 39 39 H 1.08991 * 117.50333 * 214.98187 * 24 22 20 40 40 H 1.09007 * 117.49367 * 359.97438 * 24 22 20 41 41 H 1.09001 * 109.87940 * 239.52685 * 25 19 18 42 42 H 1.08997 * 110.01221 * 118.43173 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2081 -0.0026 8 1 0.3763 5.0305 -0.0024 9 6 1.9284 6.5080 -0.0028 10 7 3.2267 6.7245 -0.0026 11 14 0.7409 7.9500 -0.0050 12 1 1.5071 9.2221 -0.0043 13 1 -0.1155 7.8879 1.2066 14 1 -0.1128 7.8864 -1.2184 15 6 2.1974 -1.2688 0.0006 16 1 3.2716 -1.0924 0.0564 17 6 1.7246 -2.1751 1.1678 18 6 2.0497 -3.5861 0.6172 19 7 1.7500 -3.5072 -0.8241 20 6 1.4391 -4.5494 -1.6200 21 8 1.2098 -4.3665 -2.7967 22 6 1.3770 -5.9422 -1.0477 23 6 2.4545 -6.9353 -1.4875 24 6 1.0207 -7.0832 -2.0028 25 6 1.8455 -2.1030 -1.2492 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3635 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 0.7585 2.5302 0.8891 30 1 0.7591 2.5298 -0.8908 31 1 3.8433 5.9757 -0.0018 32 1 2.2914 -1.9699 2.0760 33 1 0.6549 -2.0609 1.3425 34 1 1.4182 -4.3348 1.0956 35 1 3.1022 -3.8229 0.7734 36 1 1.0156 -6.0133 -0.0219 37 1 3.2086 -6.5813 -2.1904 38 1 2.8017 -7.6601 -0.7511 39 1 0.4253 -7.9050 -1.6054 40 1 0.8309 -6.8262 -3.0451 41 1 0.8901 -1.7736 -1.6577 42 1 2.6274 -1.9931 -2.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687190849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:24 Heat of formation + Delta-G solvation = -37.569673 kcal Electronic energy + Delta-G solvation = -23244.655763 eV Core-core repulsion = 19738.059376 eV Total energy + Delta-G solvation = -3506.596387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77118 -39.66787 -37.91924 -36.32602 -35.10576 -32.55333 -31.61512 -29.83360 -28.61115 -27.03076 -25.22784 -24.78023 -23.05052 -22.82369 -21.45615 -19.40134 -19.29741 -18.29699 -17.91744 -17.31705 -16.22631 -16.02919 -15.94721 -15.50213 -14.95218 -14.61993 -14.30992 -13.85661 -13.77558 -13.65770 -13.36273 -13.24916 -12.85470 -12.66991 -12.48843 -12.36020 -12.25610 -12.12889 -11.97177 -11.81240 -11.75216 -11.18061 -10.98684 -10.93729 -10.93550 -10.18987 -10.18016 -9.59915 -9.58503 -9.03756 -9.01200 -8.74371 -8.25401 -6.70652 -6.64360 -4.02814 2.15318 2.38471 2.80578 2.84209 3.29811 3.36431 3.39773 3.43243 3.56365 3.97689 4.11066 4.22305 4.33833 4.43498 4.44487 4.56160 4.65239 4.76413 4.82005 4.92894 5.00764 5.14076 5.16064 5.19913 5.26369 5.29363 5.37655 5.41038 5.48579 5.51354 5.61583 5.65005 5.69424 5.73782 5.78244 5.91168 5.96174 6.43871 7.12371 7.30843 7.83329 7.89142 8.33397 8.47681 9.24593 10.79481 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.039891 B = 0.002329 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.746233 B =12019.873228 C =12148.099364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.535 3.465 4 O -0.514 6.514 5 C -0.127 4.127 6 S -0.117 6.117 7 C -0.607 4.607 8 H 0.066 0.934 9 C 0.035 3.965 10 N -0.883 5.883 11 Si 1.084 2.916 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.134 3.866 16 H 0.119 0.881 17 C -0.147 4.147 18 C 0.103 3.897 19 N -0.614 5.614 20 C 0.557 3.443 21 O -0.538 6.538 22 C -0.192 4.192 23 C -0.151 4.151 24 C -0.148 4.148 25 C 0.097 3.903 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.278 0.722 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -26.976 2.865 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.323 3.677 4 O -0.388 6.388 5 C -0.278 4.278 6 S 0.109 5.891 7 C -0.755 4.755 8 H 0.084 0.916 9 C -0.175 4.175 10 N -0.517 5.517 11 Si 0.910 3.090 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.028 3.972 16 H 0.137 0.863 17 C -0.186 4.186 18 C -0.020 4.020 19 N -0.348 5.348 20 C 0.346 3.654 21 O -0.415 6.415 22 C -0.213 4.213 23 C -0.189 4.189 24 C -0.185 4.185 25 C -0.027 4.027 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.049 -25.258 2.173 25.849 hybrid contribution -1.684 -1.600 0.137 2.327 sum -6.733 -26.858 2.310 27.785 Atomic orbital electron populations 1.21828 0.79478 1.03409 1.02156 1.47729 1.06850 1.04840 1.75557 1.20378 0.87947 0.84522 0.74812 1.90697 1.13702 1.86686 1.47675 1.23345 1.03581 0.95703 1.05185 1.84830 1.10829 0.96180 1.97224 1.23683 0.94727 0.93370 1.63746 0.91603 1.26061 0.99061 0.99421 0.92995 1.70801 1.02022 1.35650 1.43240 0.83331 0.74081 0.74884 0.76719 1.20265 1.21130 1.21112 1.21970 0.99134 0.82958 0.93107 0.86296 1.23227 1.03118 0.93367 0.98850 1.22351 1.01432 0.97962 0.80272 1.48316 1.69352 1.06986 1.10184 1.19346 0.76024 0.84671 0.85324 1.90721 1.49618 1.85096 1.16088 1.22155 1.08730 0.89135 1.01274 1.22960 0.92577 0.99913 1.03440 1.22986 0.97844 0.97649 1.00062 1.22287 1.02866 0.80095 0.97442 0.92451 0.91016 0.90215 0.88837 0.88848 0.90990 0.88861 0.89704 0.90110 0.90574 0.85855 0.88187 0.87653 0.87802 0.87360 0.90671 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.19 59.84 0.55 1.29 16 2 N -0.61 -8.08 2.88 -171.83 -0.49 -8.58 16 3 C 0.54 9.72 7.69 -10.99 -0.08 9.64 16 4 O -0.51 -11.21 15.23 5.56 0.08 -11.13 16 5 C -0.13 -2.52 4.71 36.01 0.17 -2.35 16 6 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 7 C -0.61 -17.35 9.50 30.94 0.29 -17.06 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.39 16 9 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 10 N -0.88 -27.37 13.67 55.49 0.76 -26.62 16 11 Si 1.08 24.78 29.92 -169.99 -5.09 19.69 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.13 1.50 3.36 -66.09 -0.22 1.28 16 16 H 0.12 1.56 7.00 -51.93 -0.36 1.19 16 17 C -0.15 -1.12 6.60 -24.58 -0.16 -1.28 16 18 C 0.10 0.68 6.69 -2.53 -0.02 0.66 16 19 N -0.61 -6.07 3.33 -170.52 -0.57 -6.64 16 20 C 0.56 6.25 7.63 -10.98 -0.08 6.16 16 21 O -0.54 -8.24 16.58 5.56 0.09 -8.14 16 22 C -0.19 -1.43 5.53 -91.77 -0.51 -1.93 16 23 C -0.15 -0.94 10.24 -26.69 -0.27 -1.21 16 24 C -0.15 -1.01 10.05 -26.69 -0.27 -1.28 16 25 C 0.10 1.11 6.51 -3.06 -0.02 1.09 16 26 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 27 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 28 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 29 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 30 H 0.09 1.75 8.11 -51.92 -0.42 1.32 16 31 H 0.28 8.79 7.12 -40.82 -0.29 8.50 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.59 6.01 -51.93 -0.31 0.28 16 34 H 0.08 0.36 7.00 -51.93 -0.36 0.00 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.12 0.63 7.07 -51.93 -0.37 0.27 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.93 7.67 -51.92 -0.40 0.53 16 41 H 0.07 0.91 7.01 -51.93 -0.36 0.54 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -36.71 357.10 -8.72 -45.43 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.06 Total: -0.10 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.72 Total: -4.08 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.30 Total: -41.83 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.71 -8.72 -45.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687190849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.862 kcal (2) G-P(sol) polarization free energy of solvation -36.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds