Wall clock time and date at job start Tue Mar 31 2020 04:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00198 * 2 1 4 4 H 1.48498 * 109.46713 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99731 * 3 2 1 6 6 H 1.48495 * 109.47143 * 150.00128 * 3 2 1 7 7 C 1.38814 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99837 * 160.61093 * 7 2 1 9 9 N 1.36934 * 119.99941 * 340.61452 * 7 2 1 10 10 C 1.43428 * 120.63554 * 155.68881 * 9 7 2 11 11 C 1.55322 * 116.24141 * 269.37708 * 10 9 7 12 12 C 1.55187 * 108.87578 * 319.46702 * 11 10 9 13 13 O 1.39640 * 110.57024 * 322.13922 * 12 11 10 14 14 C 1.42381 * 108.63476 * 101.16926 * 13 12 11 15 15 H 1.09004 * 108.61840 * 28.56927 * 14 13 12 16 16 C 1.53000 * 108.62147 * 146.34439 * 14 13 12 17 17 N 1.46498 * 109.47030 * 300.00135 * 16 14 13 18 18 C 1.34773 * 120.00240 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99693 * 0.02562 * 18 17 16 20 20 C 1.50705 * 120.00246 * 179.97438 * 18 17 16 21 21 H 1.08998 * 110.48414 * 38.75623 * 20 18 17 22 22 C 1.54100 * 110.54843 * 275.89888 * 20 18 17 23 23 N 1.47059 * 103.85915 * 241.40105 * 22 20 18 24 24 C 1.33947 * 109.18022 * 0.02562 * 23 22 20 25 25 O 1.21588 * 123.04159 * 180.02562 * 24 23 22 26 26 N 1.33947 * 113.91649 * 359.97438 * 24 23 22 27 27 C 1.46917 * 113.79069 * 267.45918 * 14 13 12 28 28 H 0.97002 * 119.99425 * 0.02562 * 1 2 3 29 29 H 1.09002 * 108.12681 * 147.62242 * 10 9 7 30 30 H 1.08999 * 108.12466 * 31.13854 * 10 9 7 31 31 H 1.09000 * 109.57678 * 199.64430 * 11 10 9 32 32 H 1.09003 * 109.66871 * 79.34523 * 11 10 9 33 33 H 1.09002 * 109.26025 * 201.85514 * 12 11 10 34 34 H 1.09005 * 109.22650 * 82.40374 * 12 11 10 35 35 H 1.08997 * 109.46888 * 59.99876 * 16 14 13 36 36 H 1.08995 * 109.47359 * 180.02562 * 16 14 13 37 37 H 0.97007 * 119.99841 * 0.02562 * 17 16 14 38 38 H 1.09001 * 110.55000 * 359.97438 * 22 20 18 39 39 H 1.09002 * 110.54834 * 122.81616 * 22 20 18 40 40 H 0.96996 * 125.40555 * 179.97438 * 23 22 20 41 41 H 0.97003 * 125.41141 * 180.02562 * 26 24 23 42 42 H 1.09002 * 109.98984 * 176.11824 * 27 14 13 43 43 H 1.08998 * 109.99272 * 297.48873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0443 -1.2288 -0.3099 9 7 1.3838 -2.3542 0.3947 10 6 1.8498 -3.6321 -0.0606 11 6 1.2144 -4.1670 -1.3731 12 6 -0.3049 -3.8511 -1.3604 13 8 -0.8280 -4.0080 -0.0753 14 6 -0.9689 -2.7218 0.5188 15 1 -1.1328 -1.9894 -0.2717 16 6 -2.1989 -2.7358 1.4286 17 7 -3.3894 -3.0517 0.6355 18 6 -4.5968 -3.1199 1.2302 19 8 -4.6979 -2.9194 2.4220 20 6 -5.8216 -3.4443 0.4142 21 1 -5.5911 -4.2016 -0.3351 22 6 -6.3802 -2.1720 -0.2521 23 7 -7.7313 -2.0422 0.3139 24 6 -7.9498 -3.0513 1.1672 25 8 -8.9917 -3.1886 1.7786 26 7 -6.9170 -3.8960 1.2851 27 6 0.1958 -2.3041 1.3110 28 1 -0.4849 0.8401 -0.0004 29 1 1.6639 -4.3614 0.7279 30 1 2.9279 -3.5672 -0.2076 31 1 1.3627 -5.2449 -1.4377 32 1 1.6810 -3.6823 -2.2307 33 1 -0.8187 -4.5283 -2.0429 34 1 -0.4606 -2.8235 -1.6890 35 1 -2.0684 -3.4904 2.2043 36 1 -2.3201 -1.7562 1.8909 37 1 -3.3085 -3.2125 -0.3178 38 1 -5.7720 -1.3055 0.0077 39 1 -6.4290 -2.2965 -1.3338 40 1 -8.3634 -1.3373 0.1034 41 1 -6.8952 -4.6812 1.8544 42 1 0.0515 -1.2881 1.6786 43 1 0.3416 -2.9871 2.1478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073752521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:20 Heat of formation + Delta-G solvation = -59.231486 kcal Electronic energy + Delta-G solvation = -27077.839490 eV Core-core repulsion = 23159.843655 eV Total energy + Delta-G solvation = -3917.995834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42061 -39.51340 -38.70161 -36.32697 -35.11375 -34.68288 -33.18105 -32.31464 -31.33038 -29.65944 -28.48070 -25.72733 -25.39218 -23.89904 -22.51260 -21.94360 -20.94720 -20.35844 -19.67879 -18.18899 -17.67198 -17.12319 -16.51829 -16.16884 -15.75452 -15.61567 -15.05404 -14.98613 -14.58357 -14.46149 -14.12010 -14.06001 -13.89076 -13.38515 -13.18080 -13.07499 -12.83665 -12.51010 -12.18680 -12.03980 -11.48958 -11.30771 -10.92432 -10.81431 -10.56539 -10.48526 -10.30560 -10.19589 -10.02615 -9.76223 -9.61455 -9.56266 -9.04518 -8.91275 -8.84874 -8.57921 -6.90021 -6.00525 -3.38274 2.38566 2.67241 2.91297 3.25002 3.27418 3.36236 3.39092 3.83322 4.05626 4.37032 4.52456 4.59420 4.64496 5.01779 5.14357 5.20652 5.21881 5.40346 5.61710 5.73350 5.83014 5.88892 6.03884 6.22858 6.30176 6.35821 6.42705 6.58369 6.61166 6.72510 6.78714 6.79954 6.88243 6.95362 7.02400 7.16770 7.23639 7.58358 7.65059 8.02766 8.22368 8.24617 8.45456 8.99485 9.67668 10.21589 11.08820 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.003466 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.919054 B = 8075.748598 C = 8950.574376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.370 6.370 14 C 0.061 3.939 15 H 0.108 0.892 16 C 0.120 3.880 17 N -0.706 5.706 18 C 0.496 3.504 19 O -0.530 6.530 20 C 0.103 3.897 21 H 0.116 0.884 22 C 0.104 3.896 23 N -0.739 5.739 24 C 0.707 3.293 25 O -0.588 6.588 26 N -0.714 5.714 27 C 0.143 3.857 28 H 0.255 0.745 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.432 0.568 41 H 0.434 0.566 42 H 0.104 0.896 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 -6.123 -5.207 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.289 6.289 14 C 0.002 3.998 15 H 0.126 0.874 16 C -0.004 4.004 17 N -0.357 5.357 18 C 0.279 3.721 19 O -0.405 6.405 20 C -0.008 4.008 21 H 0.133 0.867 22 C -0.022 4.022 23 N -0.402 5.402 24 C 0.405 3.595 25 O -0.466 6.466 26 N -0.376 5.376 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.274 0.726 41 H 0.276 0.724 42 H 0.122 0.878 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -8.807 -6.064 -3.901 11.382 hybrid contribution 0.582 0.976 -0.696 1.332 sum -8.225 -5.088 -4.597 10.709 Atomic orbital electron populations 1.69852 1.05226 1.25689 1.54650 1.24877 0.95308 0.98326 1.00974 0.86281 0.79293 0.83447 0.77667 1.21511 1.21502 1.20570 1.19257 0.93740 0.85203 1.39557 0.91312 1.44108 1.34225 1.01466 1.50991 1.20373 0.95964 0.87756 0.92788 1.23576 0.96968 0.99108 1.01669 1.22350 0.93460 1.00747 0.84518 1.87517 1.83324 1.29017 1.28994 1.22206 0.93828 0.84901 0.98845 0.87449 1.21763 0.83072 1.01190 0.94348 1.45933 1.06709 1.70317 1.12759 1.20639 0.84548 0.78350 0.88605 1.90749 1.85881 1.48856 1.15061 1.21879 0.87965 0.98048 0.92878 0.86661 1.22275 0.84056 0.96825 0.99019 1.45042 1.17518 1.29921 1.47729 1.15847 0.83583 0.80133 0.79888 1.90992 1.27313 1.76741 1.51592 1.44806 1.13732 1.30252 1.48790 1.20742 0.85450 1.01415 0.90619 0.93494 0.95010 0.94871 0.93180 0.92480 0.93041 0.91850 0.91807 0.90203 0.76391 0.89177 0.88550 0.72624 0.72408 0.87791 0.96239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.36 9.57 55.49 0.53 -21.83 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.08 29.60 -169.99 -5.03 15.05 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.25 -6.19 9.62 -15.06 -0.14 -6.33 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -13.36 2.61 -174.51 -0.46 -13.82 16 10 C 0.16 3.20 5.32 -4.44 -0.02 3.17 16 11 C -0.17 -2.98 6.75 -24.34 -0.16 -3.14 16 12 C 0.07 1.13 6.38 38.32 0.24 1.37 16 13 O -0.37 -6.50 9.54 -31.94 -0.30 -6.80 16 14 C 0.06 1.12 1.95 -29.64 -0.06 1.06 16 15 H 0.11 2.21 5.24 -51.93 -0.27 1.94 16 16 C 0.12 1.97 5.24 -4.04 -0.02 1.95 16 17 N -0.71 -9.15 5.43 -60.30 -0.33 -9.47 16 18 C 0.50 6.52 6.93 -10.98 -0.08 6.45 16 19 O -0.53 -9.38 16.60 5.56 0.09 -9.29 16 20 C 0.10 0.95 4.17 -68.20 -0.28 0.67 16 21 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 22 C 0.10 0.80 7.70 -3.16 -0.02 0.78 16 23 N -0.74 -7.21 6.37 -64.70 -0.41 -7.62 16 24 C 0.71 9.51 8.92 -88.40 -0.79 8.72 16 25 O -0.59 -10.33 18.05 5.29 0.10 -10.24 16 26 N -0.71 -8.11 5.63 -59.33 -0.33 -8.44 16 27 C 0.14 3.03 4.71 -4.93 -0.02 3.00 16 28 H 0.26 6.21 8.31 -40.82 -0.34 5.87 16 29 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 30 H 0.03 0.66 7.96 -51.93 -0.41 0.24 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.20 6.66 -51.93 -0.35 0.85 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.40 4.33 8.33 -40.82 -0.34 3.99 16 38 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.43 3.35 8.96 -40.82 -0.37 2.99 16 41 H 0.43 4.60 8.96 -40.82 -0.37 4.23 16 42 H 0.10 2.44 6.03 -51.93 -0.31 2.13 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -31.84 346.49 -8.54 -40.38 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.16 Total: 9.19 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: -1.45 Total: 17.66 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -1.00 Total: -61.18 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.12 Total: -26.33 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.84 -8.54 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073752521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.852 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds