Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46839 * 2 1 4 4 C 1.52997 * 109.47242 * 239.99576 * 2 1 3 5 5 N 1.46494 * 109.47422 * 65.00061 * 4 2 1 6 6 C 1.36934 * 120.00150 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99959 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00273 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47167 * 89.99960 * 10 8 6 12 12 H 1.48494 * 109.47405 * 210.00607 * 10 8 6 13 13 H 1.48503 * 109.46872 * 330.00096 * 10 8 6 14 14 C 1.52995 * 109.46809 * 119.99314 * 2 1 3 15 15 N 1.46501 * 109.47487 * 295.00165 * 14 2 1 16 16 C 1.34778 * 120.00317 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00013 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99890 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46690 * 180.02562 * 18 16 15 20 20 C 1.47317 * 126.68513 * 269.98018 * 19 18 16 21 21 C 1.51581 * 103.58722 * 179.84385 * 20 19 18 22 22 O 1.21243 * 127.15351 * 180.24592 * 21 20 19 23 23 N 1.34766 * 105.69005 * 0.31936 * 21 20 19 24 24 C 1.46499 * 124.17994 * 179.97438 * 23 21 20 25 25 C 1.33791 * 111.64117 * 359.66261 * 23 21 20 26 26 O 1.21540 * 123.76923 * 180.23040 * 25 23 21 27 27 H 1.09004 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47930 * 300.00508 * 1 2 3 29 29 H 1.09006 * 109.47152 * 60.00908 * 1 2 3 30 30 H 1.09000 * 109.46551 * 184.99849 * 4 2 1 31 31 H 1.08996 * 109.47367 * 304.99488 * 4 2 1 32 32 H 0.97005 * 120.00212 * 0.02562 * 5 4 2 33 33 H 0.97001 * 120.00054 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47283 * 175.00774 * 14 2 1 35 35 H 1.08996 * 109.47314 * 55.00196 * 14 2 1 36 36 H 0.97001 * 119.99887 * 0.02562 * 15 14 2 37 37 H 1.08990 * 109.46764 * 60.00332 * 18 16 15 38 38 H 1.08996 * 109.47052 * 300.00252 * 18 16 15 39 39 H 1.09003 * 110.59914 * 298.56213 * 20 19 18 40 40 H 1.08994 * 110.60091 * 61.51062 * 20 19 18 41 41 H 1.09002 * 109.47391 * 269.70277 * 24 23 21 42 42 H 1.09001 * 109.46813 * 149.70333 * 24 23 21 43 43 H 1.09004 * 109.47041 * 29.70461 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0351 -2.4423 6 6 2.0021 -0.4206 -3.6854 7 1 2.5638 -1.3375 -3.7862 8 6 1.6353 0.2965 -4.8160 9 7 1.9709 -0.1418 -6.0108 10 14 0.6643 1.8828 -4.6418 11 1 1.6031 3.0274 -4.5242 12 1 -0.1970 2.0697 -5.8368 13 1 -0.1850 1.8122 -3.4256 14 6 2.0399 -0.7211 1.2493 15 7 1.6523 0.0356 2.4424 16 6 1.9953 -0.4133 3.6661 17 8 2.6253 -1.4434 3.7795 18 6 1.5961 0.3649 4.8934 19 7 2.0845 -0.3256 6.0896 20 6 1.3685 -1.3513 6.8677 21 6 2.3430 -1.7038 7.9739 22 8 2.1821 -2.5150 8.8606 23 7 3.4248 -0.9269 7.7679 24 6 4.6212 -0.9411 8.6132 25 6 3.2737 -0.1459 6.6922 26 8 4.1168 0.6381 6.3028 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8898 29 1 -0.3634 0.5137 -0.8901 30 1 3.1263 -0.7994 -1.2054 31 1 1.6055 -1.7199 -1.2950 32 1 1.1489 0.8593 -2.3518 33 1 1.7150 0.3595 -6.8008 34 1 3.1262 -0.7992 1.2058 35 1 1.6053 -1.7196 1.2953 36 1 1.1481 0.8593 2.3517 37 1 0.5098 0.4430 4.9365 38 1 2.0306 1.3635 4.8477 39 1 0.4455 -0.9444 7.2809 40 1 1.1610 -2.2254 6.2505 41 1 4.5089 -0.2105 9.4142 42 1 5.4943 -0.6890 8.0112 43 1 4.7507 -1.9345 9.0429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -55.503523 kcal Electronic energy + Delta-G solvation = -25453.705358 eV Core-core repulsion = 21535.871180 eV Total energy + Delta-G solvation = -3917.834177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.72665 -39.97775 -38.95855 -37.15706 -36.50193 -35.57574 -34.58235 -32.66315 -31.05255 -30.36932 -27.65553 -27.47313 -26.46673 -25.25244 -23.01389 -22.11367 -21.16337 -20.64075 -20.05742 -18.21776 -17.96822 -17.56088 -17.13789 -16.91934 -16.36652 -16.11785 -15.52209 -15.21299 -14.78486 -14.63664 -14.59391 -14.39190 -14.32049 -13.89806 -13.67912 -13.25768 -13.14713 -13.05652 -12.95189 -12.54375 -12.38265 -12.24232 -11.50050 -11.35131 -11.09505 -10.81284 -10.72169 -10.70150 -10.68123 -10.45743 -10.24211 -10.15562 -9.61740 -9.38927 -9.23993 -8.93513 -7.26833 -5.79386 -3.15388 1.18354 1.52568 2.31194 2.39471 2.55618 3.04856 3.32374 3.35362 3.41790 3.55998 4.14366 4.36040 4.51425 4.55490 4.62559 4.70626 4.76586 4.80778 4.87620 5.02200 5.06727 5.16609 5.19150 5.30662 5.50829 5.59371 5.67625 5.75918 5.82154 5.83756 6.00497 6.15703 6.27496 6.39662 6.61070 6.62333 6.69497 6.88502 7.22609 7.62581 7.93916 7.96722 8.39337 9.18032 9.89983 10.09445 11.38999 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.002102 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.711379 B =13319.947217 C =13360.834003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.886 3.114 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.722 5.722 16 C 0.489 3.511 17 O -0.530 6.530 18 C 0.134 3.866 19 N -0.610 5.610 20 C 0.065 3.935 21 C 0.526 3.474 22 O -0.472 6.472 23 N -0.579 5.579 24 C 0.088 3.912 25 C 0.706 3.294 26 O -0.536 6.536 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 2.072 31.124 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.581 5.581 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.375 5.375 16 C 0.273 3.727 17 O -0.406 6.406 18 C 0.008 3.992 19 N -0.348 5.348 20 C -0.061 4.061 21 C 0.314 3.686 22 O -0.342 6.342 23 N -0.325 5.325 24 C -0.053 4.053 25 C 0.408 3.592 26 O -0.409 6.409 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.194 0.806 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.981 1.210 31.238 31.403 hybrid contribution -0.910 1.492 -0.243 1.764 sum -3.891 2.702 30.995 31.355 Atomic orbital electron populations 1.21819 0.94709 1.02263 1.01283 1.21610 0.96642 1.00616 0.94536 0.90490 1.20549 0.97254 0.94228 0.84298 1.42675 1.67691 1.27288 1.02348 1.19060 1.29408 1.07224 0.81745 0.89182 1.24690 1.00791 0.98674 0.95111 1.69701 1.51284 1.40211 0.96939 0.86534 0.80211 0.84816 0.76817 1.21088 1.21721 1.20409 1.21415 1.00443 0.95217 0.82528 1.46012 1.57654 1.27962 1.05829 1.21086 0.80181 0.86406 0.85058 1.90744 1.39054 1.24316 1.86511 1.21158 1.01515 0.96122 0.80380 1.46928 1.17040 1.42650 1.28169 1.22549 0.96646 0.94464 0.92419 1.20834 0.82895 0.79477 0.85429 1.90830 1.77860 1.31821 1.33648 1.46227 1.19335 1.38672 1.28239 1.21851 0.85259 1.03996 0.94172 1.15745 0.82810 0.80978 0.79620 1.91002 1.44066 1.38435 1.67426 0.92386 0.93629 0.91747 0.95221 0.95163 0.80634 0.93033 0.91080 0.91069 0.76412 0.86148 0.86021 0.85634 0.85601 0.90821 0.89089 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.94 37.16 0.33 -1.41 16 2 C -0.11 -1.51 2.46 -90.63 -0.22 -1.74 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.16 3.00 5.65 -4.05 -0.02 2.98 16 5 N -0.75 -17.29 5.13 -59.92 -0.31 -17.60 16 6 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 10 Si 0.89 21.64 27.73 -169.99 -4.71 16.92 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 14 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 15 N -0.72 -6.41 5.28 -60.29 -0.32 -6.73 16 16 C 0.49 4.85 7.90 -10.98 -0.09 4.77 16 17 O -0.53 -7.73 16.43 5.56 0.09 -7.63 16 18 C 0.13 0.78 6.63 -5.19 -0.03 0.75 16 19 N -0.61 -4.74 2.51 -181.40 -0.45 -5.19 16 20 C 0.07 0.36 7.66 -4.31 -0.03 0.32 16 21 C 0.53 4.34 8.31 -10.56 -0.09 4.25 16 22 O -0.47 -5.01 17.75 5.59 0.10 -4.91 16 23 N -0.58 -5.12 3.00 -128.16 -0.39 -5.51 16 24 C 0.09 0.58 10.73 59.85 0.64 1.22 16 25 C 0.71 7.45 8.31 -88.02 -0.73 6.72 16 26 O -0.54 -7.46 17.15 5.33 0.09 -7.36 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.40 7.18 -51.93 -0.37 0.03 16 29 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.36 7.95 4.71 -40.82 -0.19 7.76 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 2.40 7.65 -40.82 -0.31 2.09 16 37 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.12 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.62 7.86 -51.93 -0.41 0.21 16 43 H 0.09 0.50 8.00 -51.93 -0.42 0.09 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -38.83 365.74 -6.44 -45.27 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.31 Total: 3.32 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -0.52 Total: 12.33 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.69 Total: -63.44 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.28 Total: -19.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.83 -6.44 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.229 kcal (2) G-P(sol) polarization free energy of solvation -38.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds