Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46839 * 2 1 4 4 C 1.52997 * 109.47242 * 239.99576 * 2 1 3 5 5 N 1.46494 * 109.47422 * 65.00061 * 4 2 1 6 6 C 1.36934 * 120.00150 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99959 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00273 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47167 * 89.99960 * 10 8 6 12 12 H 1.48494 * 109.47405 * 210.00607 * 10 8 6 13 13 H 1.48503 * 109.46872 * 330.00096 * 10 8 6 14 14 C 1.52995 * 109.46809 * 119.99314 * 2 1 3 15 15 N 1.46501 * 109.47487 * 295.00165 * 14 2 1 16 16 C 1.34778 * 120.00317 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00013 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99890 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46690 * 180.02562 * 18 16 15 20 20 C 1.47317 * 126.68513 * 269.98018 * 19 18 16 21 21 C 1.51581 * 103.58722 * 179.84385 * 20 19 18 22 22 O 1.21243 * 127.15351 * 180.24592 * 21 20 19 23 23 N 1.34766 * 105.69005 * 0.31936 * 21 20 19 24 24 C 1.46499 * 124.17994 * 179.97438 * 23 21 20 25 25 C 1.33791 * 111.64117 * 359.66261 * 23 21 20 26 26 O 1.21540 * 123.76923 * 180.23040 * 25 23 21 27 27 H 1.09004 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47930 * 300.00508 * 1 2 3 29 29 H 1.09006 * 109.47152 * 60.00908 * 1 2 3 30 30 H 1.09000 * 109.46551 * 184.99849 * 4 2 1 31 31 H 1.08996 * 109.47367 * 304.99488 * 4 2 1 32 32 H 0.97005 * 120.00212 * 0.02562 * 5 4 2 33 33 H 0.97001 * 120.00054 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47283 * 175.00774 * 14 2 1 35 35 H 1.08996 * 109.47314 * 55.00196 * 14 2 1 36 36 H 0.97001 * 119.99887 * 0.02562 * 15 14 2 37 37 H 1.08990 * 109.46764 * 60.00332 * 18 16 15 38 38 H 1.08996 * 109.47052 * 300.00252 * 18 16 15 39 39 H 1.09003 * 110.59914 * 298.56213 * 20 19 18 40 40 H 1.08994 * 110.60091 * 61.51062 * 20 19 18 41 41 H 1.09002 * 109.47391 * 269.70277 * 24 23 21 42 42 H 1.09001 * 109.46813 * 149.70333 * 24 23 21 43 43 H 1.09004 * 109.47041 * 29.70461 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0351 -2.4423 6 6 2.0021 -0.4206 -3.6854 7 1 2.5638 -1.3375 -3.7862 8 6 1.6353 0.2965 -4.8160 9 7 1.9709 -0.1418 -6.0108 10 14 0.6643 1.8828 -4.6418 11 1 1.6031 3.0274 -4.5242 12 1 -0.1970 2.0697 -5.8368 13 1 -0.1850 1.8122 -3.4256 14 6 2.0399 -0.7211 1.2493 15 7 1.6523 0.0356 2.4424 16 6 1.9953 -0.4133 3.6661 17 8 2.6253 -1.4434 3.7795 18 6 1.5961 0.3649 4.8934 19 7 2.0845 -0.3256 6.0896 20 6 1.3685 -1.3513 6.8677 21 6 2.3430 -1.7038 7.9739 22 8 2.1821 -2.5150 8.8606 23 7 3.4248 -0.9269 7.7679 24 6 4.6212 -0.9411 8.6132 25 6 3.2737 -0.1459 6.6922 26 8 4.1168 0.6381 6.3028 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8898 29 1 -0.3634 0.5137 -0.8901 30 1 3.1263 -0.7994 -1.2054 31 1 1.6055 -1.7199 -1.2950 32 1 1.1489 0.8593 -2.3518 33 1 1.7150 0.3595 -6.8008 34 1 3.1262 -0.7992 1.2058 35 1 1.6053 -1.7196 1.2953 36 1 1.1481 0.8593 2.3517 37 1 0.5098 0.4430 4.9365 38 1 2.0306 1.3635 4.8477 39 1 0.4455 -0.9444 7.2809 40 1 1.1610 -2.2254 6.2505 41 1 4.5089 -0.2105 9.4142 42 1 5.4943 -0.6890 8.0112 43 1 4.7507 -1.9345 9.0429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753637837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -86.380752 kcal Electronic energy + Delta-G solvation = -25455.044295 eV Core-core repulsion = 21535.871180 eV Total energy + Delta-G solvation = -3919.173115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37023 -40.78594 -39.70765 -38.36282 -37.28699 -36.27966 -35.95851 -34.18589 -32.53063 -31.28221 -28.31369 -28.10377 -27.72906 -26.47592 -24.07040 -23.48123 -21.94451 -21.60413 -21.05196 -19.68029 -18.71732 -18.60535 -17.78822 -17.69866 -17.26310 -16.85333 -16.49899 -16.38867 -16.03096 -15.58305 -15.48754 -15.31191 -15.16763 -15.00583 -14.88614 -14.39520 -14.19484 -13.87961 -13.69783 -13.63222 -13.55513 -13.21618 -13.04477 -12.85444 -12.17378 -12.10033 -12.08618 -11.98832 -11.74263 -11.67381 -11.42713 -11.29552 -10.98302 -10.93774 -10.09703 -10.03423 -9.30269 -8.02569 -5.37004 0.53604 0.95378 1.37709 1.43673 1.50907 1.59676 1.78811 1.90871 2.33368 2.49429 3.00938 3.28466 3.56503 3.67445 3.74157 3.96120 4.05344 4.14987 4.18552 4.25280 4.35429 4.38561 4.39670 4.47226 4.54579 4.68719 4.70245 4.78561 4.83648 4.95016 5.06481 5.11448 5.22407 5.30937 5.40712 5.50761 5.75258 5.97828 6.20863 6.26861 6.55011 6.91914 7.08085 7.24805 7.82798 8.04042 9.19026 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.002102 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.711379 B =13319.947217 C =13360.834003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.157 3.843 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.069 4.069 9 N -0.986 5.986 10 Si 0.961 3.039 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.243 1.243 14 C 0.138 3.862 15 N -0.708 5.708 16 C 0.486 3.514 17 O -0.584 6.584 18 C 0.136 3.864 19 N -0.606 5.606 20 C 0.072 3.928 21 C 0.524 3.476 22 O -0.501 6.501 23 N -0.584 5.584 24 C 0.082 3.918 25 C 0.698 3.302 26 O -0.580 6.580 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.024 0.976 32 H 0.369 0.631 33 H 0.258 0.742 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.420 0.580 37 H 0.178 0.822 38 H 0.134 0.866 39 H 0.173 0.827 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 4.231 33.501 34.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.106 0.894 4 C 0.030 3.970 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.260 4.260 9 N -0.636 5.636 10 Si 0.787 3.213 11 H -0.204 1.204 12 H -0.224 1.224 13 H -0.167 1.167 14 C 0.013 3.987 15 N -0.362 5.362 16 C 0.272 3.728 17 O -0.463 6.463 18 C 0.012 3.988 19 N -0.343 5.343 20 C -0.053 4.053 21 C 0.313 3.687 22 O -0.373 6.373 23 N -0.329 5.329 24 C -0.059 4.059 25 C 0.400 3.600 26 O -0.456 6.456 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.258 0.742 37 H 0.195 0.805 38 H 0.152 0.848 39 H 0.190 0.810 40 H 0.151 0.849 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.818 3.384 33.673 34.339 hybrid contribution 0.050 0.691 -0.971 1.193 sum -5.768 4.075 32.702 33.456 Atomic orbital electron populations 1.21807 0.93176 1.02382 1.02400 1.21394 0.97692 1.00360 0.92248 0.89382 1.20721 0.96745 0.94302 0.85200 1.42610 1.67620 1.27883 1.01830 1.19025 1.28070 1.05741 0.84132 0.93114 1.25628 1.02716 1.03169 0.94521 1.69907 1.53406 1.42310 0.97999 0.85327 0.78774 0.79326 0.77848 1.20376 1.22364 1.16662 1.21062 0.99121 0.95235 0.83245 1.45806 1.57413 1.28233 1.04710 1.21887 0.78922 0.85874 0.86151 1.90735 1.41442 1.26907 1.87255 1.21500 1.04700 0.95189 0.77410 1.47139 1.16187 1.42640 1.28294 1.22784 0.96944 0.94418 0.91116 1.21299 0.83086 0.78653 0.85645 1.90818 1.78411 1.32951 1.35093 1.46391 1.20036 1.38434 1.28088 1.21988 0.84656 1.04913 0.94302 1.16024 0.83260 0.80758 0.79966 1.90964 1.45619 1.40347 1.68684 0.92861 0.89365 0.93680 0.96320 0.95828 0.79673 0.93321 0.93125 0.91729 0.74199 0.80529 0.84824 0.81021 0.84924 0.89236 0.89831 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.94 71.98 0.64 -2.25 16 2 C -0.10 -2.35 2.46 -10.80 -0.03 -2.37 16 3 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 4 C 0.16 5.68 5.65 86.38 0.49 6.17 16 5 N -0.75 -33.96 5.13 -343.48 -1.76 -35.73 16 6 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 7 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 8 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 9 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 10 Si 0.96 44.10 27.73 68.60 1.90 46.00 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 14 C 0.14 3.02 5.06 86.38 0.44 3.46 16 15 N -0.71 -10.18 5.28 -463.06 -2.45 -12.63 16 16 C 0.49 8.28 7.90 87.66 0.69 8.97 16 17 O -0.58 -16.39 16.43 -3.04 -0.05 -16.44 16 18 C 0.14 1.01 6.63 85.63 0.57 1.58 16 19 N -0.61 -7.63 2.51 -846.24 -2.12 -9.75 16 20 C 0.07 0.54 7.66 85.76 0.66 1.20 16 21 C 0.52 7.85 8.31 87.94 0.73 8.58 16 22 O -0.50 -10.16 17.75 -2.92 -0.05 -10.21 16 23 N -0.58 -9.89 3.00 -796.64 -2.39 -12.29 16 24 C 0.08 1.07 10.73 127.77 1.37 2.45 16 25 C 0.70 13.94 8.31 179.44 1.49 15.43 16 26 O -0.58 -15.98 17.15 -3.84 -0.07 -16.04 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.09 1.07 7.18 -2.39 -0.02 1.06 16 29 H 0.04 1.13 7.18 -2.38 -0.02 1.11 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.37 15.35 4.71 -92.70 -0.44 14.91 16 33 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.42 2.92 7.65 -92.71 -0.71 2.21 16 37 H 0.18 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.13 0.80 8.03 -2.39 -0.02 0.79 16 39 H 0.17 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.20 7.86 -2.39 -0.02 1.18 16 43 H 0.09 1.08 8.00 -2.38 -0.02 1.07 16 Total: -1.00 -89.85 365.74 1.55 -88.30 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.16 Total: 15.02 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 8.40 Total: 26.86 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -8.42 Total: -133.49 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.17 Total: -42.69 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.90 Total: 46.00 kcal Total: -89.85 1.55 -88.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.921 kcal (2) G-P(sol) polarization free energy of solvation -89.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds