Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46707 * 2 1 4 4 C 1.52993 * 109.47217 * 119.99899 * 2 1 3 5 5 N 1.46494 * 109.47435 * 295.00160 * 4 2 1 6 6 C 1.36936 * 120.00207 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00177 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99943 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00200 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47429 * 89.99710 * 10 8 6 12 12 H 1.48497 * 109.47447 * 210.00083 * 10 8 6 13 13 H 1.48499 * 109.46854 * 330.00012 * 10 8 6 14 14 C 1.52995 * 109.47216 * 240.00410 * 2 1 3 15 15 N 1.46501 * 109.47487 * 64.99504 * 14 2 1 16 16 C 1.34778 * 120.00317 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00013 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99890 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46690 * 180.02562 * 18 16 15 20 20 C 1.47317 * 126.68513 * 269.98018 * 19 18 16 21 21 C 1.51581 * 103.58722 * 179.84385 * 20 19 18 22 22 O 1.21243 * 127.15351 * 180.24592 * 21 20 19 23 23 N 1.34766 * 105.69005 * 0.31936 * 21 20 19 24 24 C 1.46499 * 124.17994 * 179.97438 * 23 21 20 25 25 C 1.33791 * 111.64117 * 359.66261 * 23 21 20 26 26 O 1.21540 * 123.76923 * 180.23040 * 25 23 21 27 27 H 1.09001 * 109.47074 * 59.99965 * 1 2 3 28 28 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46858 * 299.99541 * 1 2 3 30 30 H 1.09002 * 109.47234 * 55.00665 * 4 2 1 31 31 H 1.09007 * 109.46729 * 174.99896 * 4 2 1 32 32 H 0.97002 * 119.99904 * 0.02562 * 5 4 2 33 33 H 0.97007 * 119.99784 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47283 * 305.00113 * 14 2 1 35 35 H 1.08996 * 109.47314 * 184.99534 * 14 2 1 36 36 H 0.97001 * 119.99887 * 0.02562 * 15 14 2 37 37 H 1.08990 * 109.46764 * 60.00332 * 18 16 15 38 38 H 1.08996 * 109.47052 * 300.00252 * 18 16 15 39 39 H 1.09003 * 110.59914 * 298.56213 * 20 19 18 40 40 H 1.08994 * 110.60091 * 61.51062 * 20 19 18 41 41 H 1.09002 * 109.47391 * 269.70277 * 24 23 21 42 42 H 1.09001 * 109.46813 * 149.70333 * 24 23 21 43 43 H 1.09004 * 109.47041 * 29.70461 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0353 2.4423 6 6 2.0011 -0.4208 3.6855 7 1 2.5622 -1.3382 3.7864 8 6 1.6335 0.2957 4.8160 9 7 0.9502 1.4139 4.6931 10 14 2.1097 -0.3262 6.5119 11 1 3.4320 0.2334 6.8912 12 1 1.0886 0.1026 7.5012 13 1 2.1872 -1.8090 6.4916 14 6 2.0400 -0.7211 -1.2492 15 7 1.6524 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6660 17 8 2.6265 -1.4430 -3.7793 18 6 1.5981 0.3657 -4.8933 19 7 2.0864 -0.3249 -6.0895 20 6 3.3893 -0.1290 -6.7486 21 6 3.3475 -1.0967 -7.9147 22 8 4.2146 -1.2858 -8.7407 23 7 2.1454 -1.7018 -7.8432 24 6 1.6801 -2.7217 -8.7862 25 6 1.4323 -1.2609 -6.8006 26 8 0.3180 -1.6613 -6.5265 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7994 1.2054 32 1 1.1483 0.8590 2.3517 33 1 0.6935 1.9148 5.4832 34 1 1.6054 -1.7197 -1.2953 35 1 3.1263 -0.7993 -1.2056 36 1 1.1488 0.8595 -2.3517 37 1 2.0327 1.3642 -4.8469 38 1 0.5119 0.4440 -4.9372 39 1 3.4900 0.8973 -7.1016 40 1 4.2040 -0.3844 -6.0712 41 1 1.1551 -2.2409 -9.6117 42 1 1.0037 -3.4072 -8.2755 43 1 2.5352 -3.2760 -9.1732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -60.049213 kcal Electronic energy + Delta-G solvation = -25382.654116 eV Core-core repulsion = 21464.622823 eV Total energy + Delta-G solvation = -3918.031293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69178 -39.90989 -38.92146 -37.00802 -36.45270 -35.53129 -34.44241 -32.62621 -30.92022 -29.96381 -27.60750 -27.40777 -26.23277 -25.08396 -23.03127 -22.43292 -21.12896 -20.55043 -19.87404 -18.10385 -17.92969 -17.25290 -17.09244 -16.76464 -16.21270 -16.13121 -15.53618 -15.08510 -14.70704 -14.58115 -14.53674 -14.38377 -14.30359 -13.73028 -13.59861 -13.15877 -13.08664 -13.01767 -12.88538 -12.51180 -12.24099 -12.06785 -11.31735 -11.09721 -10.94227 -10.75633 -10.67243 -10.62080 -10.53720 -10.38131 -10.21351 -10.05429 -9.72179 -9.33599 -9.16046 -8.90184 -6.95093 -5.79603 -3.08041 1.21595 1.56427 2.37002 2.43762 2.59273 3.11882 3.42312 3.47784 3.49277 3.59623 4.18754 4.42328 4.56302 4.57317 4.66392 4.75998 4.80456 4.89753 4.99674 5.09509 5.16234 5.21360 5.33008 5.34930 5.55252 5.76428 5.83253 5.92014 5.92677 6.05824 6.19145 6.33779 6.39536 6.61750 6.65823 6.73184 6.82780 6.91650 7.30622 7.66163 7.68295 8.00744 8.39573 9.50940 10.07814 10.42565 11.43329 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.038940 B = 0.001989 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.887524 B =14071.146091 C =14232.153757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.721 5.721 16 C 0.489 3.511 17 O -0.533 6.533 18 C 0.134 3.866 19 N -0.610 5.610 20 C 0.065 3.935 21 C 0.526 3.474 22 O -0.472 6.472 23 N -0.579 5.579 24 C 0.088 3.912 25 C 0.706 3.294 26 O -0.537 6.537 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 0.435 -27.703 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.004 3.996 15 N -0.373 5.373 16 C 0.273 3.727 17 O -0.409 6.409 18 C 0.008 3.992 19 N -0.347 5.347 20 C -0.061 4.061 21 C 0.314 3.686 22 O -0.342 6.342 23 N -0.325 5.325 24 C -0.053 4.053 25 C 0.408 3.592 26 O -0.410 6.410 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.535 -0.755 -27.901 27.954 hybrid contribution -0.126 0.331 1.138 1.192 sum 1.409 -0.424 -26.763 26.803 Atomic orbital electron populations 1.21798 0.94585 1.02027 1.01529 1.21552 0.96771 1.00466 0.94117 0.90464 1.20575 0.96597 0.94247 0.85396 1.42332 1.66931 1.27689 1.00579 1.19234 1.28664 1.05464 0.83646 0.91160 1.24739 1.00995 0.97437 0.97887 1.69655 1.43542 1.16599 1.28510 0.86174 0.77577 0.78037 0.84314 1.21724 1.21773 1.20750 1.21440 1.00128 0.95336 0.82743 1.46021 1.57510 1.27969 1.05805 1.21078 0.80191 0.86422 0.85052 1.90736 1.39592 1.24034 1.86503 1.21167 1.02567 0.95120 0.80341 1.46931 1.17439 1.42330 1.28032 1.22549 0.88368 1.01388 0.93781 1.20839 0.81015 0.81106 0.85662 1.90828 1.40128 1.64192 1.39069 1.46227 1.18058 1.39813 1.28383 1.21845 1.01618 0.90118 0.91680 1.15744 0.84253 0.79690 0.79471 1.90999 1.17448 1.61062 1.71471 0.93849 0.92801 0.91110 0.96003 0.96153 0.78200 0.93524 0.91293 0.91280 0.76330 0.86112 0.86020 0.85616 0.85596 0.90833 0.89115 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.58 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.16 3.08 5.65 -4.05 -0.02 3.06 16 5 N -0.73 -17.93 5.33 -59.91 -0.32 -18.25 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.13 1.61 5.06 -4.04 -0.02 1.59 16 15 N -0.72 -6.97 5.28 -60.29 -0.32 -7.29 16 16 C 0.49 5.14 7.90 -10.98 -0.09 5.05 16 17 O -0.53 -8.03 16.43 5.56 0.09 -7.94 16 18 C 0.13 0.85 6.63 -5.19 -0.03 0.81 16 19 N -0.61 -4.96 2.51 -181.40 -0.45 -5.41 16 20 C 0.06 0.38 7.66 -4.31 -0.03 0.35 16 21 C 0.53 4.48 8.31 -10.56 -0.09 4.39 16 22 O -0.47 -5.13 17.75 5.59 0.10 -5.03 16 23 N -0.58 -5.25 3.00 -128.16 -0.39 -5.63 16 24 C 0.09 0.59 10.73 59.85 0.64 1.24 16 25 C 0.71 7.64 8.31 -88.02 -0.73 6.91 16 26 O -0.54 -7.57 17.15 5.33 0.09 -7.48 16 27 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 33 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.40 2.77 7.66 -40.82 -0.31 2.45 16 37 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 0.68 8.03 -51.93 -0.42 0.26 16 39 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 43 H 0.09 0.51 8.00 -51.93 -0.42 0.10 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -37.71 368.85 -6.80 -44.51 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.35 Total: 4.12 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -0.51 Total: 12.66 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.75 Total: -63.64 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.28 Total: -20.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.71 -6.80 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.542 kcal (2) G-P(sol) polarization free energy of solvation -37.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds