Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47488 * 2 1 4 4 C 1.53007 * 109.46921 * 240.00414 * 2 1 3 5 5 N 1.46499 * 109.47111 * 185.00233 * 4 2 1 6 6 C 1.46498 * 119.99710 * 269.72246 * 5 4 2 7 7 C 1.36941 * 120.00048 * 90.00153 * 5 4 2 8 8 H 1.08007 * 119.99577 * 342.71541 * 7 5 4 9 9 C 1.38805 * 119.99882 * 162.71592 * 7 5 4 10 10 N 1.31614 * 120.00346 * 345.43881 * 9 7 5 11 11 Si 1.86798 * 119.99777 * 165.43130 * 9 7 5 12 12 H 1.48507 * 109.46839 * 90.00220 * 11 9 7 13 13 H 1.48497 * 109.47409 * 210.00263 * 11 9 7 14 14 H 1.48504 * 109.47461 * 330.00597 * 11 9 7 15 15 N 1.46501 * 109.47016 * 120.00935 * 2 1 3 16 16 C 1.34774 * 119.99498 * 274.99139 * 15 2 1 17 17 O 1.21284 * 120.00430 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99944 * 179.97438 * 16 15 2 19 19 N 1.46497 * 109.47399 * 180.02562 * 18 16 15 20 20 C 1.46414 * 119.53378 * 269.72686 * 19 18 16 21 21 C 1.53357 * 109.34742 * 144.04546 * 20 19 18 22 22 C 1.50804 * 109.08562 * 46.99882 * 21 20 19 23 23 O 1.21232 * 120.01704 * 145.59270 * 22 21 20 24 24 N 1.34559 * 119.96797 * 325.60694 * 22 21 20 25 25 C 1.34287 * 119.53756 * 90.00172 * 19 18 16 26 26 O 1.21541 * 119.20745 * 5.68784 * 25 19 18 27 27 H 1.08997 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 299.99908 * 1 2 3 29 29 H 1.08998 * 109.46926 * 59.99352 * 1 2 3 30 30 H 1.09002 * 109.47060 * 64.99674 * 4 2 1 31 31 H 1.09004 * 109.46648 * 305.00230 * 4 2 1 32 32 H 1.09001 * 109.46935 * 265.34951 * 6 5 4 33 33 H 1.08998 * 109.47098 * 25.35314 * 6 5 4 34 34 H 1.09003 * 109.46903 * 145.34998 * 6 5 4 35 35 H 0.97002 * 120.00223 * 179.97438 * 10 9 7 36 36 H 0.96995 * 120.00273 * 94.99738 * 15 2 1 37 37 H 1.09000 * 109.47365 * 300.00513 * 18 16 15 38 38 H 1.09002 * 109.47271 * 60.00234 * 18 16 15 39 39 H 1.08996 * 109.46423 * 264.18012 * 20 19 18 40 40 H 1.09005 * 109.46512 * 24.15348 * 20 19 18 41 41 H 1.08992 * 109.69551 * 287.03573 * 21 20 19 42 42 H 1.08999 * 109.43986 * 166.80001 * 21 20 19 43 43 H 0.96998 * 119.50556 * 184.46722 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2311 -1.7667 7 6 4.0849 -1.9160 -0.6025 8 1 3.5076 -2.5500 0.0542 9 6 5.4196 -2.2056 -0.8504 10 7 6.0441 -1.6241 -1.8525 11 14 6.3295 -3.4205 0.2384 12 1 6.1863 -4.7891 -0.3199 13 1 7.7680 -3.0559 0.2923 14 1 5.7575 -3.3824 1.6083 15 7 2.0183 -0.6908 1.1961 16 6 2.1472 -0.0185 2.3570 17 8 1.8584 1.1582 2.4118 18 6 2.6489 -0.7292 3.5876 19 7 2.6979 0.2119 4.7092 20 6 3.9207 0.9787 4.9551 21 6 3.5497 2.3810 5.4529 22 6 2.5056 2.2601 6.5343 23 8 2.4993 3.0413 7.4613 24 7 1.5811 1.2845 6.4700 25 6 1.6226 0.3551 5.5007 26 8 0.6640 -0.3738 5.3365 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7516 -0.1582 -2.1371 31 1 1.6053 -1.7197 -1.2953 32 1 4.6105 -0.0387 -2.7861 33 1 3.7775 1.1681 -1.7770 34 1 5.2357 0.3507 -1.1656 35 1 6.9770 -1.8262 -2.0255 36 1 2.2490 -1.6319 1.1524 37 1 1.9760 -1.5510 3.8324 38 1 3.6480 -1.1218 3.3985 39 1 4.5231 0.4701 5.7078 40 1 4.4901 1.0611 4.0293 41 1 3.1521 2.9707 4.6270 42 1 4.4368 2.8693 5.8562 43 1 0.8739 1.2520 7.1331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -65.534391 kcal Electronic energy + Delta-G solvation = -27238.462987 eV Core-core repulsion = 23320.193839 eV Total energy + Delta-G solvation = -3918.269149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77783 -39.56203 -38.79242 -36.67521 -36.06586 -34.74935 -34.08132 -31.89915 -31.31837 -30.23927 -27.51631 -26.23880 -25.69034 -25.22946 -23.31309 -22.01096 -20.74753 -19.90422 -19.17134 -18.44904 -17.88347 -17.29773 -16.78088 -16.27936 -16.01252 -15.33962 -15.07359 -14.87953 -14.78208 -14.52867 -14.40320 -13.83808 -13.58396 -13.36496 -13.13570 -12.97418 -12.80749 -12.28868 -12.09114 -11.95540 -11.72367 -11.63484 -11.12338 -10.94865 -10.89875 -10.81701 -10.46840 -10.43396 -10.38377 -10.36056 -10.12319 -9.95391 -9.85118 -8.86684 -8.63809 -8.49806 -6.89681 -5.82792 -3.24691 1.56193 2.17176 2.89352 2.99386 3.02484 3.26813 3.31122 3.35978 3.74435 4.16604 4.32844 4.37530 4.72051 4.83822 5.08333 5.20645 5.23993 5.26354 5.36158 5.40679 5.51154 5.57289 5.75210 5.80553 5.90345 5.94679 6.09868 6.16769 6.30798 6.41056 6.44560 6.70627 6.76984 7.06008 7.19372 7.32199 7.35664 7.56307 7.72008 7.96533 8.06230 8.25525 8.66335 9.11863 9.76590 10.25095 11.22095 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.004203 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.460388 B = 6660.597149 C = 7507.821403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.166 3.834 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.001 3.999 10 N -0.905 5.905 11 Si 0.900 3.100 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.691 5.691 16 C 0.498 3.502 17 O -0.553 6.553 18 C 0.105 3.895 19 N -0.595 5.595 20 C 0.111 3.889 21 C -0.158 4.158 22 C 0.528 3.472 23 O -0.510 6.510 24 N -0.675 5.675 25 C 0.716 3.284 26 O -0.557 6.557 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.026 0.974 33 H -0.005 1.005 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.404 0.596 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 3.376 11.022 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.730 3.270 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 N -0.342 5.342 16 C 0.282 3.718 17 O -0.432 6.432 18 C -0.022 4.022 19 N -0.331 5.331 20 C -0.011 4.011 21 C -0.198 4.198 22 C 0.316 3.684 23 O -0.383 6.383 24 N -0.343 5.343 25 C 0.418 3.582 26 O -0.432 6.432 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.013 0.987 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.240 0.760 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.142 4.229 11.225 13.051 hybrid contribution 0.479 -1.054 0.661 1.333 sum -4.663 3.174 11.886 13.156 Atomic orbital electron populations 1.22120 0.96510 1.01520 1.01614 1.21856 0.92193 0.98184 0.86525 0.90558 1.21053 0.86007 0.98298 0.93358 1.43893 0.98899 1.21431 1.68122 1.20791 0.92999 0.86069 0.98007 1.19041 0.94073 1.04107 1.20887 0.91458 1.24904 0.98187 0.99117 0.97504 1.70103 1.10953 1.45753 1.28205 0.86349 0.79449 0.80983 0.80216 1.21484 1.21654 1.20611 1.45874 1.65159 1.14397 1.08748 1.20823 0.78208 0.87726 0.85051 1.90634 1.51263 1.16038 1.85233 1.21420 1.05138 0.91844 0.83770 1.46551 1.12778 1.44132 1.29635 1.21738 0.86322 0.89598 1.03483 1.22309 0.99325 0.99693 0.98452 1.21033 0.81511 0.79141 0.86704 1.90774 1.72618 1.40863 1.33999 1.44238 1.31279 1.27606 1.31192 1.15509 0.83244 0.80586 0.78890 1.90986 1.34750 1.46193 1.71250 0.92819 0.92932 0.92161 0.93002 0.93014 0.95607 0.98663 0.93373 0.93703 0.76001 0.86424 0.86344 0.90274 0.87556 0.86090 0.85747 0.73538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 2 C 0.12 2.01 2.88 -67.92 -0.20 1.81 16 3 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 4 C 0.14 2.57 5.30 -4.04 -0.02 2.55 16 5 N -0.60 -13.51 2.82 -181.11 -0.51 -14.02 16 6 C 0.17 3.86 8.97 59.85 0.54 4.40 16 7 C -0.25 -6.00 8.80 -15.06 -0.13 -6.13 16 8 H 0.07 1.48 6.40 -52.48 -0.34 1.14 16 9 C 0.00 0.03 5.09 -17.44 -0.09 -0.06 16 10 N -0.90 -24.64 10.45 55.49 0.58 -24.06 16 11 Si 0.90 19.65 29.58 -169.99 -5.03 14.62 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 N -0.69 -11.17 4.49 -53.80 -0.24 -11.41 16 16 C 0.50 8.02 7.86 -10.99 -0.09 7.93 16 17 O -0.55 -10.45 16.09 5.55 0.09 -10.36 16 18 C 0.10 1.32 5.84 -5.19 -0.03 1.29 16 19 N -0.60 -7.17 2.28 -180.95 -0.41 -7.58 16 20 C 0.11 1.00 6.60 -3.90 -0.03 0.97 16 21 C -0.16 -1.39 6.30 -27.65 -0.17 -1.57 16 22 C 0.53 5.96 7.76 -11.03 -0.09 5.88 16 23 O -0.51 -7.07 17.93 5.60 0.10 -6.97 16 24 N -0.67 -7.72 5.18 -16.02 -0.08 -7.80 16 25 C 0.72 9.71 8.22 -87.74 -0.72 8.99 16 26 O -0.56 -9.23 16.57 5.33 0.09 -9.14 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 33 H -0.01 -0.11 8.04 -51.93 -0.42 -0.53 16 34 H 0.05 1.22 6.95 -51.93 -0.36 0.86 16 35 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.40 6.29 6.58 -40.82 -0.27 6.02 16 37 H 0.12 1.43 7.27 -51.93 -0.38 1.05 16 38 H 0.12 1.27 8.06 -51.93 -0.42 0.85 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.93 8.01 -51.93 -0.42 0.52 16 41 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.42 4.26 8.86 -40.82 -0.36 3.90 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -32.92 358.34 -6.94 -39.86 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.25 Total: 7.33 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: -0.67 Total: 24.13 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.67 Total: -64.87 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.28 Total: -26.47 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.92 -6.94 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.672 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds