Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47488 * 2 1 4 4 C 1.53007 * 109.46921 * 240.00414 * 2 1 3 5 5 N 1.46499 * 109.47111 * 185.00233 * 4 2 1 6 6 C 1.46498 * 119.99710 * 269.72246 * 5 4 2 7 7 C 1.36941 * 120.00048 * 90.00153 * 5 4 2 8 8 H 1.08007 * 119.99577 * 342.71541 * 7 5 4 9 9 C 1.38805 * 119.99882 * 162.71592 * 7 5 4 10 10 N 1.31614 * 120.00346 * 345.43881 * 9 7 5 11 11 Si 1.86798 * 119.99777 * 165.43130 * 9 7 5 12 12 H 1.48507 * 109.46839 * 90.00220 * 11 9 7 13 13 H 1.48497 * 109.47409 * 210.00263 * 11 9 7 14 14 H 1.48504 * 109.47461 * 330.00597 * 11 9 7 15 15 N 1.46501 * 109.47016 * 120.00935 * 2 1 3 16 16 C 1.34774 * 119.99498 * 274.99139 * 15 2 1 17 17 O 1.21284 * 120.00430 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99944 * 179.97438 * 16 15 2 19 19 N 1.46497 * 109.47399 * 180.02562 * 18 16 15 20 20 C 1.46414 * 119.53378 * 269.72686 * 19 18 16 21 21 C 1.53357 * 109.34742 * 144.04546 * 20 19 18 22 22 C 1.50804 * 109.08562 * 46.99882 * 21 20 19 23 23 O 1.21232 * 120.01704 * 145.59270 * 22 21 20 24 24 N 1.34559 * 119.96797 * 325.60694 * 22 21 20 25 25 C 1.34287 * 119.53756 * 90.00172 * 19 18 16 26 26 O 1.21541 * 119.20745 * 5.68784 * 25 19 18 27 27 H 1.08997 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 299.99908 * 1 2 3 29 29 H 1.08998 * 109.46926 * 59.99352 * 1 2 3 30 30 H 1.09002 * 109.47060 * 64.99674 * 4 2 1 31 31 H 1.09004 * 109.46648 * 305.00230 * 4 2 1 32 32 H 1.09001 * 109.46935 * 265.34951 * 6 5 4 33 33 H 1.08998 * 109.47098 * 25.35314 * 6 5 4 34 34 H 1.09003 * 109.46903 * 145.34998 * 6 5 4 35 35 H 0.97002 * 120.00223 * 179.97438 * 10 9 7 36 36 H 0.96995 * 120.00273 * 94.99738 * 15 2 1 37 37 H 1.09000 * 109.47365 * 300.00513 * 18 16 15 38 38 H 1.09002 * 109.47271 * 60.00234 * 18 16 15 39 39 H 1.08996 * 109.46423 * 264.18012 * 20 19 18 40 40 H 1.09005 * 109.46512 * 24.15348 * 20 19 18 41 41 H 1.08992 * 109.69551 * 287.03573 * 21 20 19 42 42 H 1.08999 * 109.43986 * 166.80001 * 21 20 19 43 43 H 0.96998 * 119.50556 * 184.46722 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2311 -1.7667 7 6 4.0849 -1.9160 -0.6025 8 1 3.5076 -2.5500 0.0542 9 6 5.4196 -2.2056 -0.8504 10 7 6.0441 -1.6241 -1.8525 11 14 6.3295 -3.4205 0.2384 12 1 6.1863 -4.7891 -0.3199 13 1 7.7680 -3.0559 0.2923 14 1 5.7575 -3.3824 1.6083 15 7 2.0183 -0.6908 1.1961 16 6 2.1472 -0.0185 2.3570 17 8 1.8584 1.1582 2.4118 18 6 2.6489 -0.7292 3.5876 19 7 2.6979 0.2119 4.7092 20 6 3.9207 0.9787 4.9551 21 6 3.5497 2.3810 5.4529 22 6 2.5056 2.2601 6.5343 23 8 2.4993 3.0413 7.4613 24 7 1.5811 1.2845 6.4700 25 6 1.6226 0.3551 5.5007 26 8 0.6640 -0.3738 5.3365 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7516 -0.1582 -2.1371 31 1 1.6053 -1.7197 -1.2953 32 1 4.6105 -0.0387 -2.7861 33 1 3.7775 1.1681 -1.7770 34 1 5.2357 0.3507 -1.1656 35 1 6.9770 -1.8262 -2.0255 36 1 2.2490 -1.6319 1.1524 37 1 1.9760 -1.5510 3.8324 38 1 3.6480 -1.1218 3.3985 39 1 4.5231 0.4701 5.7078 40 1 4.4901 1.0611 4.0293 41 1 3.1521 2.9707 4.6270 42 1 4.4368 2.8693 5.8562 43 1 0.8739 1.2520 7.1331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -89.489075 kcal Electronic energy + Delta-G solvation = -27239.501740 eV Core-core repulsion = 23320.193839 eV Total energy + Delta-G solvation = -3919.307902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.74129 -40.75409 -39.90769 -38.09512 -37.18689 -35.82340 -35.57838 -33.23413 -32.54165 -31.63474 -28.56569 -28.00964 -27.33674 -26.04421 -24.34282 -23.53367 -22.14064 -21.26272 -20.11230 -19.37715 -18.95943 -18.64220 -18.12157 -17.46681 -17.21452 -16.87759 -16.40158 -15.93456 -15.73644 -15.62201 -15.52082 -15.43769 -14.83702 -14.67306 -14.43607 -14.33941 -13.82773 -13.62955 -13.42592 -13.08463 -12.92595 -12.78248 -12.64101 -12.60430 -12.47114 -12.13529 -11.96007 -11.85849 -11.81837 -11.71526 -11.41777 -11.39509 -11.06715 -10.51250 -9.90745 -9.83404 -8.74487 -7.71786 -5.15050 0.61068 1.23681 1.56362 1.57737 1.65774 1.77993 1.94050 2.07968 2.56635 2.61251 3.35204 3.43159 3.57529 3.73155 3.91380 4.00480 4.08945 4.18502 4.41874 4.43034 4.44429 4.54053 4.57002 4.77760 4.80472 4.89541 4.90588 4.92196 5.01470 5.06727 5.19207 5.35367 5.41466 5.49049 5.67002 5.75254 5.81532 6.26230 6.37964 6.38696 6.75472 7.01451 7.22127 7.41972 7.95398 8.41012 9.32963 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.004203 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.460388 B = 6660.597149 C = 7507.821403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.052 0.948 4 C 0.142 3.858 5 N -0.614 5.614 6 C 0.182 3.818 7 C -0.241 4.241 8 H 0.090 0.910 9 C -0.059 4.059 10 N -0.946 5.946 11 Si 0.959 3.041 12 H -0.295 1.295 13 H -0.307 1.307 14 H -0.249 1.249 15 N -0.692 5.692 16 C 0.493 3.507 17 O -0.585 6.585 18 C 0.109 3.891 19 N -0.594 5.594 20 C 0.106 3.894 21 C -0.151 4.151 22 C 0.531 3.469 23 O -0.536 6.536 24 N -0.670 5.670 25 C 0.715 3.285 26 O -0.593 6.593 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.062 0.938 32 H -0.001 1.001 33 H 0.016 0.984 34 H 0.021 0.979 35 H 0.242 0.758 36 H 0.408 0.592 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 2.630 12.256 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.070 0.930 4 C 0.016 3.984 5 N -0.336 5.336 6 C 0.037 3.963 7 C -0.371 4.371 8 H 0.107 0.893 9 C -0.253 4.253 10 N -0.594 5.594 11 Si 0.788 3.212 12 H -0.223 1.223 13 H -0.235 1.235 14 H -0.173 1.173 15 N -0.343 5.343 16 C 0.278 3.722 17 O -0.466 6.466 18 C -0.017 4.017 19 N -0.329 5.329 20 C -0.015 4.015 21 C -0.191 4.191 22 C 0.321 3.679 23 O -0.411 6.411 24 N -0.338 5.338 25 C 0.416 3.584 26 O -0.470 6.470 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.245 0.755 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.171 0.829 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.461 3.480 12.487 14.066 hybrid contribution 0.484 -0.772 0.237 0.942 sum -4.976 2.708 12.724 13.929 Atomic orbital electron populations 1.22010 0.94448 1.02469 1.01719 1.21595 0.93622 0.96502 0.86132 0.93020 1.21199 0.83514 0.99253 0.94476 1.44123 1.00646 1.20921 1.67960 1.20477 0.92563 0.87344 0.95939 1.19540 0.94049 1.03660 1.19886 0.89269 1.25664 0.99403 1.01386 0.98879 1.70292 1.10531 1.48162 1.30404 0.85393 0.77354 0.78253 0.80191 1.22267 1.23451 1.17315 1.45893 1.65146 1.14534 1.08747 1.21449 0.77435 0.87448 0.85821 1.90620 1.52618 1.17566 1.85801 1.21472 1.06456 0.91573 0.82239 1.46695 1.13245 1.44106 1.28840 1.22033 0.85287 0.89441 1.04733 1.22357 0.99514 0.99970 0.97230 1.21451 0.81456 0.78294 0.86708 1.90768 1.73323 1.41731 1.35279 1.44192 1.31500 1.27265 1.30836 1.15654 0.83172 0.80426 0.79115 1.90959 1.36132 1.47568 1.72357 0.91402 0.94393 0.90487 0.92019 0.91940 0.98316 0.96505 0.96039 0.94836 0.75513 0.85787 0.83762 0.87262 0.86989 0.86989 0.82911 0.73114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.48 71.98 0.68 -3.24 16 2 C 0.13 4.09 2.88 44.99 0.13 4.22 16 3 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 4 C 0.14 4.89 5.30 86.38 0.46 5.35 16 5 N -0.61 -26.88 2.82 -726.92 -2.05 -28.93 16 6 C 0.18 8.51 8.97 127.77 1.15 9.66 16 7 C -0.24 -11.10 8.80 84.03 0.74 -10.36 16 8 H 0.09 3.64 6.40 -2.91 -0.02 3.62 16 9 C -0.06 -2.96 5.09 84.86 0.43 -2.53 16 10 N -0.95 -52.37 10.45 21.65 0.23 -52.14 16 11 Si 0.96 39.53 29.58 68.60 2.03 41.55 16 12 H -0.30 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.31 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 15 N -0.69 -20.97 4.49 -442.52 -1.99 -22.96 16 16 C 0.49 15.03 7.86 87.66 0.69 15.72 16 17 O -0.58 -21.59 16.09 -3.04 -0.05 -21.64 16 18 C 0.11 2.48 5.84 85.63 0.50 2.98 16 19 N -0.59 -13.00 2.28 -844.97 -1.93 -14.93 16 20 C 0.11 1.59 6.60 86.52 0.57 2.16 16 21 C -0.15 -2.33 6.30 30.00 0.19 -2.14 16 22 C 0.53 11.23 7.76 87.72 0.68 11.91 16 23 O -0.54 -14.28 17.93 -2.88 -0.05 -14.34 16 24 N -0.67 -14.64 5.18 -441.65 -2.29 -16.92 16 25 C 0.71 18.44 8.22 179.34 1.47 19.91 16 26 O -0.59 -19.17 16.57 -3.85 -0.06 -19.24 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 31 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 32 H 0.00 -0.08 7.51 -2.39 -0.02 -0.09 16 33 H 0.02 0.69 8.04 -2.39 -0.02 0.67 16 34 H 0.02 1.09 6.95 -2.39 -0.02 1.07 16 35 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.41 11.57 6.58 -92.71 -0.61 10.96 16 37 H 0.12 2.71 7.27 -2.39 -0.02 2.69 16 38 H 0.14 2.54 8.06 -2.39 -0.02 2.52 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.62 8.01 -2.38 -0.02 1.60 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.43 8.38 8.86 -92.71 -0.82 7.56 16 Total: -1.00 -71.63 358.34 1.15 -70.48 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.38 Total: 25.41 kcal Atomic # 6 Polarization: 45.94 SS G_CDS: 7.69 Total: 53.63 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -8.03 Total: -135.88 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.16 Total: -55.21 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.55 kcal Total: -71.63 1.15 -70.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.004 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds