Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46544 * 2 1 4 4 C 1.52998 * 109.46883 * 119.99487 * 2 1 3 5 5 N 1.46496 * 109.47294 * 175.00320 * 4 2 1 6 6 C 1.46492 * 120.00308 * 270.00144 * 5 4 2 7 7 C 1.36936 * 120.00150 * 89.99982 * 5 4 2 8 8 H 1.08004 * 119.99838 * 20.38440 * 7 5 4 9 9 C 1.38812 * 120.00610 * 200.38655 * 7 5 4 10 10 N 1.31620 * 119.99628 * 14.99653 * 9 7 5 11 11 Si 1.86792 * 120.00407 * 195.00594 * 9 7 5 12 12 H 1.48496 * 109.47604 * 84.99759 * 11 9 7 13 13 H 1.48503 * 109.47293 * 204.99823 * 11 9 7 14 14 H 1.48501 * 109.47123 * 324.99632 * 11 9 7 15 15 N 1.46499 * 109.47690 * 239.99635 * 2 1 3 16 16 C 1.34771 * 119.99984 * 84.99516 * 15 2 1 17 17 O 1.21285 * 119.99985 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00130 * 180.02562 * 16 15 2 19 19 N 1.46495 * 109.47270 * 180.02562 * 18 16 15 20 20 C 1.46414 * 119.53628 * 89.99931 * 19 18 16 21 21 C 1.53043 * 109.51673 * 144.12140 * 20 19 18 22 22 C 1.50811 * 109.18417 * 46.70197 * 21 20 19 23 23 O 1.21226 * 120.01678 * 145.74169 * 22 21 20 24 24 N 1.34558 * 119.96280 * 325.76017 * 22 21 20 25 25 C 1.34293 * 119.53655 * 269.98229 * 19 18 16 26 26 O 1.21537 * 119.20434 * 5.72723 * 25 19 18 27 27 H 1.09005 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47662 * 299.99969 * 1 2 3 29 29 H 1.09001 * 109.46900 * 60.00763 * 1 2 3 30 30 H 1.09003 * 109.47296 * 295.00249 * 4 2 1 31 31 H 1.09001 * 109.47469 * 54.99887 * 4 2 1 32 32 H 1.09006 * 109.47322 * 95.12307 * 6 5 4 33 33 H 1.08997 * 109.47751 * 215.12410 * 6 5 4 34 34 H 1.09000 * 109.47279 * 335.12688 * 6 5 4 35 35 H 0.97000 * 120.00034 * 179.97438 * 10 9 7 36 36 H 0.96998 * 119.99693 * 265.00596 * 15 2 1 37 37 H 1.09001 * 109.46834 * 60.00325 * 18 16 15 38 38 H 1.08999 * 109.46837 * 300.00524 * 18 16 15 39 39 H 1.08998 * 109.46136 * 264.13572 * 20 19 18 40 40 H 1.09000 * 109.46017 * 24.10835 * 20 19 18 41 41 H 1.09003 * 109.51515 * 166.60416 * 21 20 19 42 42 H 1.08994 * 109.52389 * 286.78248 * 21 20 19 43 43 H 0.96996 * 119.50560 * 184.46122 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1259 -1.9917 0.5616 7 6 4.2798 0.1650 1.7242 8 1 3.8669 0.8403 2.4590 9 6 5.6009 0.3019 1.3206 10 7 6.0234 -0.3082 0.2336 11 14 6.7789 1.3517 2.3202 12 1 7.3496 0.5401 3.4251 13 1 7.8758 1.8359 1.4441 14 1 6.0479 2.5139 2.8862 15 7 2.0185 -0.6907 -1.1961 16 6 2.1472 -0.0184 -2.3570 17 8 1.8590 1.1584 -2.4115 18 6 2.6491 -0.7290 -3.5876 19 7 2.6990 0.2124 -4.7089 20 6 3.9202 0.9831 -4.9505 21 6 4.1286 1.1520 -6.4572 22 6 2.8288 1.5779 -7.0926 23 8 2.8362 2.3320 -8.0417 24 7 1.6610 1.1206 -6.6051 25 6 1.6242 0.3561 -5.5010 26 8 0.5933 -0.2191 -5.2119 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.7516 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2954 32 1 4.3629 -1.7605 -0.4770 33 1 5.0417 -2.2450 1.0955 34 1 3.4386 -2.8370 0.5978 35 1 6.9465 -0.2123 -0.0487 36 1 2.2491 -1.6318 -1.1524 37 1 1.9762 -1.5508 -3.8324 38 1 3.6482 -1.1215 -3.3983 39 1 3.8288 1.9641 -4.4842 40 1 4.7730 0.4559 -4.5228 41 1 4.8881 1.9130 -6.6368 42 1 4.4518 0.2048 -6.8887 43 1 0.8333 1.3460 -7.0578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -66.450717 kcal Electronic energy + Delta-G solvation = -27210.658773 eV Core-core repulsion = 23292.349889 eV Total energy + Delta-G solvation = -3918.308883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73637 -39.49036 -38.71771 -36.60601 -36.03095 -34.70204 -34.00895 -31.83887 -31.23202 -30.28388 -27.46125 -26.22643 -25.63420 -25.15307 -23.26438 -21.96502 -20.66997 -19.92996 -19.08741 -18.37873 -17.82723 -17.16459 -16.85963 -16.32418 -15.85894 -15.28377 -14.92729 -14.85258 -14.65134 -14.55855 -14.31437 -13.77540 -13.61147 -13.31174 -13.12112 -12.86733 -12.74018 -12.28330 -12.14017 -11.90601 -11.61783 -11.45394 -11.11987 -10.88655 -10.82286 -10.78546 -10.58542 -10.39915 -10.34055 -10.25195 -10.02795 -9.89188 -9.76288 -8.77128 -8.64233 -8.37680 -6.84237 -5.80079 -3.21852 1.59240 2.19887 2.88803 3.11050 3.16731 3.35138 3.41700 3.42663 3.79243 4.18845 4.38006 4.46253 4.72084 4.87352 5.12366 5.25708 5.26968 5.34135 5.36607 5.42826 5.62015 5.69043 5.82099 5.86227 5.98274 6.00811 6.09090 6.24239 6.35836 6.46841 6.52573 6.59889 6.86089 7.16097 7.23919 7.25923 7.36079 7.56124 7.75231 8.01773 8.11861 8.31459 8.79037 9.16943 9.79891 10.26850 11.25674 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.004113 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.052637 B = 6805.678902 C = 8021.446199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.253 4.253 8 H 0.069 0.931 9 C 0.004 3.996 10 N -0.907 5.907 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.696 5.696 16 C 0.503 3.497 17 O -0.544 6.544 18 C 0.110 3.890 19 N -0.593 5.593 20 C 0.108 3.892 21 C -0.157 4.157 22 C 0.526 3.474 23 O -0.509 6.509 24 N -0.675 5.675 25 C 0.714 3.286 26 O -0.556 6.556 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.043 0.957 34 H -0.004 1.004 35 H 0.250 0.750 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -3.678 -10.186 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.553 5.553 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.346 5.346 16 C 0.287 3.713 17 O -0.421 6.421 18 C -0.017 4.017 19 N -0.329 5.329 20 C -0.014 4.014 21 C -0.197 4.197 22 C 0.314 3.686 23 O -0.382 6.382 24 N -0.343 5.343 25 C 0.416 3.584 26 O -0.430 6.430 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.229 0.771 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.888 -2.797 -10.521 11.933 hybrid contribution 0.591 0.364 0.316 0.763 sum -4.297 -2.433 -10.205 11.337 Atomic orbital electron populations 1.22147 0.96876 1.01140 1.01647 1.21835 0.91679 0.99026 0.86264 0.89790 1.21193 0.85638 0.97328 0.94393 1.43920 0.99113 1.20855 1.68096 1.20836 0.94595 0.85113 0.97725 1.19208 0.92941 1.09520 1.16546 0.91363 1.24886 0.98498 0.99440 0.96551 1.70048 1.15847 1.47059 1.22312 0.86300 0.80889 0.80042 0.79466 1.21551 1.21837 1.20638 1.45716 1.66076 1.13626 1.09201 1.20714 0.77999 0.87721 0.84844 1.90654 1.50526 1.15935 1.85025 1.21387 1.04775 0.91446 0.84078 1.46508 1.13144 1.44313 1.28948 1.21722 0.87470 0.98423 0.93822 1.22287 0.95247 1.06037 0.96121 1.21022 0.86060 0.78662 0.82886 1.90776 1.87548 1.32685 1.27167 1.44237 1.11920 1.50676 1.27492 1.15509 0.83980 0.79425 0.79512 1.90986 1.29454 1.49277 1.73293 0.93159 0.92211 0.92963 0.92319 0.93923 0.95187 0.93838 0.98549 0.93953 0.77110 0.86964 0.86395 0.89883 0.87342 0.85513 0.86744 0.73466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 3 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 4 C 0.14 2.64 5.33 -4.04 -0.02 2.62 16 5 N -0.60 -13.55 2.78 -181.13 -0.50 -14.05 16 6 C 0.16 3.47 7.60 59.84 0.45 3.93 16 7 C -0.25 -6.55 9.68 -15.06 -0.15 -6.70 16 8 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 9 C 0.00 0.11 5.06 -17.43 -0.09 0.03 16 10 N -0.91 -24.28 10.67 55.49 0.59 -23.69 16 11 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 N -0.70 -11.77 4.42 -53.81 -0.24 -12.01 16 16 C 0.50 8.86 7.86 -10.99 -0.09 8.77 16 17 O -0.54 -11.67 16.09 5.55 0.09 -11.59 16 18 C 0.11 1.44 5.82 -5.20 -0.03 1.41 16 19 N -0.59 -7.61 2.28 -181.15 -0.41 -8.02 16 20 C 0.11 1.11 6.64 -4.07 -0.03 1.08 16 21 C -0.16 -1.25 6.28 -27.81 -0.17 -1.43 16 22 C 0.53 5.92 7.76 -11.03 -0.09 5.83 16 23 O -0.51 -7.13 17.93 5.60 0.10 -7.03 16 24 N -0.67 -7.96 5.18 -16.02 -0.08 -8.05 16 25 C 0.71 10.07 8.21 -87.74 -0.72 9.35 16 26 O -0.56 -9.52 16.66 5.33 0.09 -9.43 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.66 16 31 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 32 H 0.03 0.67 6.97 -51.93 -0.36 0.30 16 33 H 0.04 1.04 7.22 -51.93 -0.37 0.67 16 34 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 35 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.39 5.94 7.18 -40.82 -0.29 5.65 16 37 H 0.11 1.33 7.44 -51.93 -0.39 0.94 16 38 H 0.12 1.29 7.82 -51.93 -0.41 0.88 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.11 0.94 7.79 -51.93 -0.40 0.54 16 41 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.42 4.51 8.86 -40.82 -0.36 4.15 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -34.54 359.12 -7.05 -41.59 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.30 Total: 5.96 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: -0.77 Total: 24.76 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.65 Total: -65.82 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.28 Total: -28.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.54 -7.05 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.857 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds