Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46544 * 2 1 4 4 C 1.52998 * 109.46883 * 119.99487 * 2 1 3 5 5 N 1.46496 * 109.47294 * 175.00320 * 4 2 1 6 6 C 1.46492 * 120.00308 * 270.00144 * 5 4 2 7 7 C 1.36936 * 120.00150 * 89.99982 * 5 4 2 8 8 H 1.08004 * 119.99838 * 20.38440 * 7 5 4 9 9 C 1.38812 * 120.00610 * 200.38655 * 7 5 4 10 10 N 1.31620 * 119.99628 * 14.99653 * 9 7 5 11 11 Si 1.86792 * 120.00407 * 195.00594 * 9 7 5 12 12 H 1.48496 * 109.47604 * 84.99759 * 11 9 7 13 13 H 1.48503 * 109.47293 * 204.99823 * 11 9 7 14 14 H 1.48501 * 109.47123 * 324.99632 * 11 9 7 15 15 N 1.46499 * 109.47690 * 239.99635 * 2 1 3 16 16 C 1.34771 * 119.99984 * 84.99516 * 15 2 1 17 17 O 1.21285 * 119.99985 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00130 * 180.02562 * 16 15 2 19 19 N 1.46495 * 109.47270 * 180.02562 * 18 16 15 20 20 C 1.46414 * 119.53628 * 89.99931 * 19 18 16 21 21 C 1.53043 * 109.51673 * 144.12140 * 20 19 18 22 22 C 1.50811 * 109.18417 * 46.70197 * 21 20 19 23 23 O 1.21226 * 120.01678 * 145.74169 * 22 21 20 24 24 N 1.34558 * 119.96280 * 325.76017 * 22 21 20 25 25 C 1.34293 * 119.53655 * 269.98229 * 19 18 16 26 26 O 1.21537 * 119.20434 * 5.72723 * 25 19 18 27 27 H 1.09005 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47662 * 299.99969 * 1 2 3 29 29 H 1.09001 * 109.46900 * 60.00763 * 1 2 3 30 30 H 1.09003 * 109.47296 * 295.00249 * 4 2 1 31 31 H 1.09001 * 109.47469 * 54.99887 * 4 2 1 32 32 H 1.09006 * 109.47322 * 95.12307 * 6 5 4 33 33 H 1.08997 * 109.47751 * 215.12410 * 6 5 4 34 34 H 1.09000 * 109.47279 * 335.12688 * 6 5 4 35 35 H 0.97000 * 120.00034 * 179.97438 * 10 9 7 36 36 H 0.96998 * 119.99693 * 265.00596 * 15 2 1 37 37 H 1.09001 * 109.46834 * 60.00325 * 18 16 15 38 38 H 1.08999 * 109.46837 * 300.00524 * 18 16 15 39 39 H 1.08998 * 109.46136 * 264.13572 * 20 19 18 40 40 H 1.09000 * 109.46017 * 24.10835 * 20 19 18 41 41 H 1.09003 * 109.51515 * 166.60416 * 21 20 19 42 42 H 1.08994 * 109.52389 * 286.78248 * 21 20 19 43 43 H 0.96996 * 119.50560 * 184.46122 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1259 -1.9917 0.5616 7 6 4.2798 0.1650 1.7242 8 1 3.8669 0.8403 2.4590 9 6 5.6009 0.3019 1.3206 10 7 6.0234 -0.3082 0.2336 11 14 6.7789 1.3517 2.3202 12 1 7.3496 0.5401 3.4251 13 1 7.8758 1.8359 1.4441 14 1 6.0479 2.5139 2.8862 15 7 2.0185 -0.6907 -1.1961 16 6 2.1472 -0.0184 -2.3570 17 8 1.8590 1.1584 -2.4115 18 6 2.6491 -0.7290 -3.5876 19 7 2.6990 0.2124 -4.7089 20 6 3.9202 0.9831 -4.9505 21 6 4.1286 1.1520 -6.4572 22 6 2.8288 1.5779 -7.0926 23 8 2.8362 2.3320 -8.0417 24 7 1.6610 1.1206 -6.6051 25 6 1.6242 0.3561 -5.5010 26 8 0.5933 -0.2191 -5.2119 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.7516 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2954 32 1 4.3629 -1.7605 -0.4770 33 1 5.0417 -2.2450 1.0955 34 1 3.4386 -2.8370 0.5978 35 1 6.9465 -0.2123 -0.0487 36 1 2.2491 -1.6318 -1.1524 37 1 1.9762 -1.5508 -3.8324 38 1 3.6482 -1.1215 -3.3983 39 1 3.8288 1.9641 -4.4842 40 1 4.7730 0.4559 -4.5228 41 1 4.8881 1.9130 -6.6368 42 1 4.4518 0.2048 -6.8887 43 1 0.8333 1.3460 -7.0578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -92.247941 kcal Electronic energy + Delta-G solvation = -27211.777424 eV Core-core repulsion = 23292.349889 eV Total energy + Delta-G solvation = -3919.427535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74177 -40.75427 -39.89439 -38.07298 -37.21359 -35.82396 -35.58266 -33.18449 -32.57516 -31.73105 -28.57296 -27.89747 -27.35846 -26.03223 -24.33771 -23.50655 -22.12822 -21.35493 -20.08115 -19.37496 -18.83280 -18.71764 -18.34309 -17.45463 -17.17621 -16.68771 -16.48341 -15.91193 -15.77880 -15.67032 -15.54036 -15.35072 -15.08357 -14.76554 -14.41103 -14.15518 -13.77328 -13.67804 -13.37907 -13.08995 -12.95106 -12.80532 -12.65775 -12.54327 -12.50041 -12.24718 -11.98125 -11.87856 -11.78040 -11.68198 -11.39979 -11.39540 -11.08872 -10.56836 -9.91552 -9.85248 -8.69003 -7.77232 -5.18842 0.62960 1.20057 1.47803 1.50151 1.55538 1.81726 1.92366 2.15563 2.51484 2.57692 3.35607 3.36058 3.60153 3.74824 3.89305 4.00709 4.09865 4.23995 4.38225 4.43622 4.44429 4.54544 4.58726 4.77901 4.82191 4.90176 4.92410 4.95559 5.02914 5.06222 5.21794 5.39627 5.42735 5.46411 5.70846 5.77797 5.86289 6.26432 6.39383 6.39657 6.74630 7.01308 7.24502 7.45546 7.96093 8.35628 9.25226 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.004113 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.052637 B = 6805.678902 C = 8021.446199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 H 0.035 0.965 4 C 0.144 3.856 5 N -0.610 5.610 6 C 0.172 3.828 7 C -0.262 4.262 8 H 0.061 0.939 9 C -0.041 4.041 10 N -0.922 5.922 11 Si 0.952 3.048 12 H -0.287 1.287 13 H -0.296 1.296 14 H -0.281 1.281 15 N -0.692 5.692 16 C 0.492 3.508 17 O -0.591 6.591 18 C 0.116 3.884 19 N -0.593 5.593 20 C 0.105 3.895 21 C -0.142 4.142 22 C 0.526 3.474 23 O -0.538 6.538 24 N -0.672 5.672 25 C 0.714 3.286 26 O -0.591 6.591 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.010 0.990 34 H 0.036 0.964 35 H 0.246 0.754 36 H 0.406 0.594 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.130 0.870 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -5.098 -10.354 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 H 0.053 0.947 4 C 0.017 3.983 5 N -0.333 5.333 6 C 0.028 3.972 7 C -0.392 4.392 8 H 0.079 0.921 9 C -0.237 4.237 10 N -0.569 5.569 11 Si 0.782 3.218 12 H -0.214 1.214 13 H -0.222 1.222 14 H -0.207 1.207 15 N -0.342 5.342 16 C 0.278 3.722 17 O -0.472 6.472 18 C -0.010 4.010 19 N -0.327 5.327 20 C -0.016 4.016 21 C -0.182 4.182 22 C 0.316 3.684 23 O -0.413 6.413 24 N -0.340 5.340 25 C 0.416 3.584 26 O -0.468 6.468 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.242 0.758 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.595 -4.240 -10.680 12.375 hybrid contribution 0.439 0.820 0.420 1.020 sum -4.156 -3.421 -10.260 11.586 Atomic orbital electron populations 1.22012 0.94442 1.02668 1.01357 1.21588 0.93444 0.96433 0.86714 0.94651 1.21318 0.83430 0.99185 0.94353 1.44089 1.00662 1.20500 1.68025 1.20679 0.94236 0.85902 0.96410 1.19418 0.93616 1.09849 1.16360 0.92137 1.25430 0.99701 1.00953 0.97594 1.70145 1.15642 1.48053 1.23063 0.85519 0.79165 0.78832 0.78265 1.21395 1.22249 1.20682 1.45705 1.65651 1.14080 1.08800 1.21580 0.77112 0.87393 0.86090 1.90631 1.52577 1.18118 1.85876 1.21472 1.06348 0.91182 0.82031 1.46641 1.13553 1.44226 1.28300 1.21880 0.87048 0.97275 0.95424 1.22348 0.93647 1.08190 0.94019 1.21631 0.86700 0.77739 0.82322 1.90770 1.87869 1.33996 1.28627 1.44218 1.12646 1.50153 1.26952 1.15655 0.83767 0.79170 0.79856 1.90955 1.30801 1.50819 1.74247 0.90600 0.90797 0.94984 0.92314 0.90537 0.96082 0.97078 0.94544 0.94424 0.75760 0.85364 0.83650 0.92157 0.85167 0.83438 0.83624 0.73226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.48 71.98 0.68 -3.56 16 2 C 0.13 4.48 2.88 44.99 0.13 4.61 16 3 H 0.04 1.61 7.58 -2.39 -0.02 1.59 16 4 C 0.14 5.05 5.33 86.38 0.46 5.51 16 5 N -0.61 -26.97 2.78 -726.96 -2.02 -29.00 16 6 C 0.17 7.09 7.60 127.77 0.97 8.06 16 7 C -0.26 -13.54 9.68 84.03 0.81 -12.73 16 8 H 0.06 3.15 7.86 -2.91 -0.02 3.13 16 9 C -0.04 -2.14 5.06 84.86 0.43 -1.71 16 10 N -0.92 -49.20 10.67 21.65 0.23 -48.97 16 11 Si 0.95 43.57 29.58 68.60 2.03 45.60 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 N -0.69 -22.59 4.42 -442.54 -1.96 -24.55 16 16 C 0.49 17.11 7.86 87.66 0.69 17.80 16 17 O -0.59 -25.95 16.09 -3.04 -0.05 -26.00 16 18 C 0.12 2.84 5.82 85.63 0.50 3.34 16 19 N -0.59 -14.44 2.28 -845.60 -1.93 -16.37 16 20 C 0.11 1.98 6.64 86.41 0.57 2.55 16 21 C -0.14 -1.92 6.28 29.90 0.19 -1.73 16 22 C 0.53 11.23 7.76 87.73 0.68 11.91 16 23 O -0.54 -14.66 17.93 -2.86 -0.05 -14.71 16 24 N -0.67 -15.57 5.18 -441.65 -2.29 -17.85 16 25 C 0.71 19.71 8.21 179.34 1.47 21.18 16 26 O -0.59 -20.16 16.66 -3.83 -0.06 -20.22 16 27 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.08 2.19 7.86 -2.39 -0.02 2.18 16 32 H 0.02 0.90 6.97 -2.38 -0.02 0.88 16 33 H 0.01 0.50 7.22 -2.39 -0.02 0.48 16 34 H 0.04 1.19 7.83 -2.39 -0.02 1.17 16 35 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 36 H 0.41 11.26 7.18 -92.71 -0.67 10.60 16 37 H 0.13 2.76 7.44 -2.39 -0.02 2.75 16 38 H 0.15 2.77 7.82 -2.39 -0.02 2.75 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.13 1.91 7.79 -2.39 -0.02 1.89 16 41 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.43 9.14 8.86 -92.71 -0.82 8.32 16 Total: -1.00 -76.43 359.12 1.05 -75.39 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.44 Total: 21.45 kcal Atomic # 6 Polarization: 47.64 SS G_CDS: 7.59 Total: 55.23 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -7.96 Total: -136.73 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -0.16 Total: -60.93 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -76.43 1.05 -75.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.862 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds